Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011430

Physical Location & Seq

Genomic Coordinates Reverse (-)

4327089 .. 4330256

Gene Structure 3168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G038500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAGCTTCCTTTCACATCGTTTACAGCTCCTAATCCTCCAACGACGTCGTTGTGTGGCAAACTCGGCCTCTGCCATTTTCCGGCGACGAGAAAGAGGAGGACGGCGCTGTTCGACGGAGCTTCTAAGGTTTCGGTACCGGCGGTTAGGGGCTCGGGGGAGCAACGCAGCAGAGAAGGCATTGATGGAAGAGACGGAGAGAGTCGGGGAGGAGGGTTCACGAGCCCTGCCATGGAGGTCACCACATTTAATTCGAGCTTCGGCGAAGCTGAGTTCCCTGTTTGGGAAAAGATTGGTGCTGTTGTTAGACTTAGCTATGGAATAGGTATATATGGTGCAATGGCTGTGGTAGGAAGATTTATATGCTCTGTCACGGGGATCGATAGCATGGGAGGTTTCCAAGTATCTTTAGATGCAATTGTACAAGGGCTTGGATATGCAGCTCCACCAATCATGGCCCTTCTCTTTATACTAGATGATGAAGTTGTAAAGTTATCGCCACATGCTCGTGCTATTAGAGATGTAGAGGATGAGGAGCTCCGCAGCTTCTTTTATGGAATGTCACCTTTGCAGTTTATACTAATTGTTGCTGCAAGCTCCGTGGGTGAGGAACTTTTCTACAGGGCTGCTGTTCAGGGATCGTTGACCGATATATTTCTAAGGGGCACAGATCTGGTCACAGATGCTCGAGGAATGGCGTCTCTGACCGGATTTTTTCCCCCATTTGTCCCTTTTGCTCAGGCATTTGCAGCGGTGATTACAGCTGCTCTTACAGGTTCTCTGTACTATGTAGCAGCCTCTCCAAAAGATCCTGATTATGTAGTTGCACCAGTTTTACCATCTCGCTCTGGCCGTGAAGAGATGAAAAAGCTGTTTGCAGCTTGGTATCAGAGGAGGCAAATGAAGAAGATCTACTCTCCCCTGCTTGAAGGACATCTGGCCCTATATCTTGGTTTTGAGTGGATGCAGACAAATAATATTCTTGCGCCCATGATCACACATGGCATATACTCTGCTGTGGTATTGGGTCATGGCCTCTTGAAGATACATGATCATCGGAGAAGACTACGCCAGAGAATTGAACACCTTAAAGTAGATGGCAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

370

Amino Acids

40.32

Weight (kDa)

8.86

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35260
fragaria_vesca	FvH4_5g21880
malus_domestica	MD00G1220600.v1.1 MD06G1033000.v1.1
prunus_persica	Prupe.5G038500_v2.0.a1
pyrus_communis	pycom06g02730
rosa_chinensis	RchiOBHm_Chr6g0284251 RchiOBHm_Chr7g0209431
rosa_laevigata	RLG00000003137
rosa_multiflora	Rmu_sc0001861.1_g000004 Rmu_sc0007059.1_g000001 Rmu_sc0015095.1_g000003
rosa_roxburghii	Rroxscaffold_3G00249470 Rroxscaffold_3G00250390
rosa_rugosa	Rorug07G0112500
rosa_samantha	Rh7AG246700 Rh7BG241700 Rh7CG262300 Rh7DG252900
rosa_wichuraiana	Rw7G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	50
Acc65I	GGTACC	1 cut(s)	136
AccB1I	GGYRCC	1 cut(s)	136
AciI	CCGC	3 cut(s)	143, 541, 752
AclWI	GGATC	3 cut(s)	386, 646, 803
AcoI	YGGCCR	1 cut(s)	850
AcyI	GRCGYC	2 cut(s)	47, 698
AfaI	GTAC	3 cut(s)	138, 423, 785
AfiI	CCNNNNNNNGG	3 cut(s)	82, 232, 283
AgsI	TTSAA	3 cut(s)	929, 1042, 1082
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	2 cut(s)	186, 705
AlwI	GGATC	3 cut(s)	386, 646, 803
Ama87I	CYCGRG	2 cut(s)	154, 687
AoxI	GGCC	5 cut(s)	67, 456, 850, 939, 1033
ApeKI	GCWGC	9 cut(s)	168, 440, 543, 590, 626, 749, 764, 794, 878
Asp718I	GGTACC	1 cut(s)	136
AspLEI	GCGC	2 cut(s)	109, 988
AspS9I	GGNCC	2 cut(s)	457, 940
AsuHPI	GGTGA	4 cut(s)	232, 555, 617, 766
AvaI	CYCGRG	2 cut(s)	154, 687
BaeGI	GKGCMC	1 cut(s)	668
BanI	GGYRCC	1 cut(s)	136
BanII	GRGCYC	3 cut(s)	155, 227, 540
BarI	GAAGNNNNNNTAC	2 cut(s)	896, 928
BauI	CACGAG	2 cut(s)	220, 507
BbsI	GAAGAC	1 cut(s)	1069
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	9 cut(s)	180, 452, 555, 577, 613, 751, 761, 806, 890
BccI	CCATC	3 cut(s)	179, 847, 1091
BceAI	ACGGC	2 cut(s)	120, 837
BclI	TGATCA	2 cut(s)	993, 1051
BcoDI	GTCTC	2 cut(s)	186, 705
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	1 cut(s)	619
BfoI	RGCGCY	1 cut(s)	110
BglII	AGATCT	2 cut(s)	670, 909
BisI	GCNGC	9 cut(s)	169, 441, 544, 591, 627, 750, 765, 795, 879
BlsI	GCNGC	9 cut(s)	170, 442, 545, 592, 628, 751, 766, 796, 880
BmeT110I	CYCGRG	2 cut(s)	154, 687
BmgT120I	GGNCC	2 cut(s)	457, 940
BmiI	GGNNCC	1 cut(s)	138
BmsI	GCATC	3 cut(s)	403, 673, 954
BpiI	GAAGAC	1 cut(s)	1069
Bpu10I	CCTNAGC	1 cut(s)	738
Bsa29I	ATCGAT	1 cut(s)	381
BsaHI	GRCGYC	2 cut(s)	47, 698
BsaJI	CCNNGG	2 cut(s)	231, 600
BsaWI	WCCGGW	1 cut(s)	707
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 232, 283
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	830
Bse3DI	GCAATG	1 cut(s)	345
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	231, 600
BseGI	GGATG	2 cut(s)	535, 969
BseLI	CCNNNNNNNGG	3 cut(s)	82, 232, 283
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	261, 752
BseNI	ACTGG	1 cut(s)	830
BseRI	GAGGAG	4 cut(s)	112, 225, 548, 907
BseSI	GKGCMC	1 cut(s)	668
BseXI	GCAGC	9 cut(s)	180, 452, 555, 577, 613, 751, 761, 806, 890
BshFI	GGCC	5 cut(s)	69, 458, 852, 941, 1035
BshNI	GGYRCC	1 cut(s)	136
BshVI	ATCGAT	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	2 cut(s)	154, 687
BsiSI	CCGG	3 cut(s)	83, 140, 708
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	3 cut(s)	82, 232, 283
BsmAI	GTCTC	2 cut(s)	186, 705
BsmBI	CGTCTC	2 cut(s)	186, 705
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	5 cut(s)	69, 458, 852, 941, 1035
BsoBI	CYCGRG	2 cut(s)	154, 687
Bsp1286I	GDGCHC	4 cut(s)	155, 227, 540, 668
Bsp1407I	TGTACA	1 cut(s)	421
Bsp143I	GATC	7 cut(s)	378, 638, 670, 808, 909, 993, 1051
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	3 cut(s)	143, 541, 752
BspANI	GGCC	5 cut(s)	69, 458, 852, 941, 1035
BspCNI	CTCAG	2 cut(s)	262, 751
BspDI	ATCGAT	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	3 cut(s)	386, 646, 803
BspT107I	GGYRCC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	139
BsrGI	TGTACA	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	830
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	231, 600
BssMI	GATC	7 cut(s)	378, 638, 670, 808, 909, 993, 1051
BssNI	GRCGYC	2 cut(s)	47, 698
BssSI	CACGAG	2 cut(s)	220, 507
BssT1I	CCWWGG	1 cut(s)	231
Bst2BI	CACGAG	2 cut(s)	220, 507
Bst6I	CTCTTC	2 cut(s)	184, 852
BstACI	GRCGYC	2 cut(s)	47, 698
BstAUI	TGTACA	1 cut(s)	421
BstC8I	GCNNGC	1 cut(s)	595
BstDEI	CTNAG	5 cut(s)	126, 270, 311, 659, 738
BstDSI	CCRYGG	2 cut(s)	231, 600
BstEII	GGTNACC	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	535, 969
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	2 cut(s)	109, 988
BstKTI	GATC	7 cut(s)	381, 641, 673, 811, 912, 996, 1054
BstMAI	GTCTC	2 cut(s)	186, 705
BstMBI	GATC	7 cut(s)	378, 638, 670, 808, 909, 993, 1051
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 177, 749
BstNSI	RCATGY	1 cut(s)	506
BstPI	GGTNACC	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	619
BstSLI	GKGCMC	1 cut(s)	668
BstV1I	GCAGC	9 cut(s)	180, 452, 555, 577, 613, 751, 761, 806, 890
BstV2I	GAAGAC	1 cut(s)	1069
BstX2I	RGATCY	3 cut(s)	670, 808, 909
BstYI	RGATCY	3 cut(s)	670, 808, 909
Bsu15I	ATCGAT	1 cut(s)	381
BsuRI	GGCC	5 cut(s)	69, 458, 852, 941, 1035
BsuTUI	ATCGAT	1 cut(s)	381
BtgI	CCRYGG	2 cut(s)	231, 600
BtsCI	GGATG	2 cut(s)	535, 969
Cac8I	GCNNGC	1 cut(s)	595
CfoI	GCGC	2 cut(s)	109, 988
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	457, 940
ClaI	ATCGAT	1 cut(s)	381
CseI	GACGC	1 cut(s)	687
Csp6I	GTAC	3 cut(s)	137, 422, 784
CspCI	CAANNNNNGTGG	4 cut(s)	327, 362, 582, 617
CviAII	CATG	8 cut(s)	232, 388, 454, 503, 991, 1001, 1031, 1049
CviQI	GTAC	3 cut(s)	137, 422, 784
DdeI	CTNAG	5 cut(s)	126, 270, 311, 659, 738
DpnI	GATC	7 cut(s)	380, 640, 672, 810, 911, 995, 1053
DpnII	GATC	7 cut(s)	378, 638, 670, 808, 909, 993, 1051
EaeI	YGGCCR	1 cut(s)	850
Eam1104I	CTCTTC	2 cut(s)	184, 852
EarI	CTCTTC	2 cut(s)	184, 852
Ecl136II	GAGCTC	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	3 cut(s)	155, 227, 540
Eco53kI	GAGCTC	1 cut(s)	538
Eco88I	CYCGRG	2 cut(s)	154, 687
Eco91I	GGTNACC	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	538
EcoO65I	GGTNACC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	3 cut(s)	155, 227, 540
ErhI	CCWWGG	1 cut(s)	231
Esp3I	CGTCTC	2 cut(s)	186, 705
FaeI	CATG	8 cut(s)	235, 391, 457, 506, 994, 1004, 1034, 1052
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	8 cut(s)	231, 387, 453, 502, 990, 1000, 1030, 1048
FbaI	TGATCA	2 cut(s)	993, 1051
Fnu4HI	GCNGC	9 cut(s)	169, 441, 544, 591, 627, 750, 765, 795, 879
FokI	GGATG	2 cut(s)	542, 976
FriOI	GRGCYC	3 cut(s)	155, 227, 540
Fsp4HI	GCNGC	9 cut(s)	169, 441, 544, 591, 627, 750, 765, 795, 879
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	2 cut(s)	108, 987
GluI	GCNGC	9 cut(s)	169, 441, 544, 591, 627, 750, 765, 795, 879
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	5 cut(s)	69, 458, 852, 941, 1035
HapII	CCGG	3 cut(s)	83, 140, 708
HgaI	GACGC	1 cut(s)	687
HhaI	GCGC	2 cut(s)	109, 988
Hin1I	GRCGYC	2 cut(s)	47, 698
Hin1II	CATG	8 cut(s)	235, 391, 457, 506, 994, 1004, 1034, 1052
Hin6I	GCGC	2 cut(s)	107, 986
HinP1I	GCGC	2 cut(s)	107, 986
HincII	GTYRAC	1 cut(s)	645
HindII	GTYRAC	1 cut(s)	645
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	3 cut(s)	83, 140, 708
HphI	GGTGA	4 cut(s)	232, 555, 617, 766
Hpy166II	GTNNAC	3 cut(s)	24, 219, 645
Hpy188I	TCNGA	3 cut(s)	705, 891, 1059
Hpy188III	TCNNGA	3 cut(s)	220, 812, 1039
Hpy8I	GTNNAC	3 cut(s)	24, 219, 645
Hpy99I	CGWCG	4 cut(s)	49, 52, 91, 119
HpyAV	CCTTC	3 cut(s)	170, 470, 923
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	9 cut(s)	338, 416, 440, 571, 593, 749, 827, 878, 967
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 177, 749
HpyF3I	CTNAG	5 cut(s)	126, 270, 311, 659, 738
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	2 cut(s)	47, 698
Hsp92II	CATG	8 cut(s)	235, 391, 457, 506, 994, 1004, 1034, 1052
HspAI	GCGC	2 cut(s)	107, 986
KpnI	GGTACC	1 cut(s)	140
Ksp22I	TGATCA	2 cut(s)	993, 1051
Kzo9I	GATC	7 cut(s)	378, 638, 670, 808, 909, 993, 1051
LmnI	GCTCC	8 cut(s)	4, 34, 119, 160, 448, 535, 543, 602
Lsp1109I	GCAGC	9 cut(s)	180, 452, 555, 577, 613, 751, 761, 806, 890
LweI	GCATC	3 cut(s)	403, 673, 954
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	4 cut(s)	238, 370, 561, 676
MalI	GATC	7 cut(s)	380, 640, 672, 810, 911, 995, 1053
MboI	GATC	7 cut(s)	378, 638, 670, 808, 909, 993, 1051
MboII	GAAGA	7 cut(s)	201, 366, 869, 916, 919, 1054, 1074
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	3 cut(s)	670, 808, 909
MhlI	GDGCHC	4 cut(s)	155, 227, 540, 668
MluCI	AATT	4 cut(s)	250, 417, 582, 1077
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	65
MseI	TTAA	2 cut(s)	249, 1089
MslI	CAYNNNNRTG	1 cut(s)	507
MspA1I	CMGCKG	2 cut(s)	752, 764
MspI	CCGG	3 cut(s)	83, 140, 708
MunI	CAATTG	1 cut(s)	417
MwoI	GCNNNNNNNGC	3 cut(s)	66, 177, 749
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	7 cut(s)	378, 638, 670, 808, 909, 993, 1051
NlaIII	CATG	8 cut(s)	235, 391, 457, 506, 994, 1004, 1034, 1052
NlaIV	GGNNCC	1 cut(s)	138
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	4 cut(s)	238, 370, 561, 676
NspI	RCATGY	1 cut(s)	506
PaeR7I	CTCGAG	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	1 cut(s)	850
PkrI	GCNGC	9 cut(s)	170, 442, 545, 592, 628, 751, 766, 796, 880
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	540
PspEI	GGTNACC	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	2 cut(s)	457, 940
PspXI	VCTCGAGB	1 cut(s)	687
PsuI	RGATCY	3 cut(s)	670, 808, 909
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	3 cut(s)	138, 423, 785
RsaNI	GTAC	3 cut(s)	137, 422, 784
RseI	CAYNNNNRTG	1 cut(s)	507
SacI	GAGCTC	1 cut(s)	540
SaqAI	TTAA	2 cut(s)	249, 1089
SatI	GCNGC	9 cut(s)	169, 441, 544, 591, 627, 750, 765, 795, 879
Sau3AI	GATC	7 cut(s)	378, 638, 670, 808, 909, 993, 1051
Sau96I	GGNCC	2 cut(s)	457, 940
SchI	GAGTC	1 cut(s)	211
SduI	GDGCHC	4 cut(s)	155, 227, 540, 668
SfaNI	GCATC	3 cut(s)	403, 673, 954
SfcI	CTRYAG	1 cut(s)	619
Sfr274I	CTCGAG	1 cut(s)	687
SlaI	CTCGAG	1 cut(s)	687
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	1 cut(s)	687
SmoI	CTYRAG	1 cut(s)	687
Sse9I	AATT	4 cut(s)	250, 417, 582, 1077
SsiI	CCGC	3 cut(s)	143, 541, 752
SspI	AATATT	1 cut(s)	979
SspMI	CTAG	1 cut(s)	473
SstI	GAGCTC	1 cut(s)	540
StyI	CCWWGG	1 cut(s)	231
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	4 cut(s)	114, 254, 381, 688
TaqII	GACCGA	1 cut(s)	662
TasI	AATT	4 cut(s)	250, 417, 582, 1077
TatI	WGTACW	2 cut(s)	421, 783
Tru1I	TTAA	2 cut(s)	249, 1089
Tru9I	TTAA	2 cut(s)	249, 1089
TseFI	GTSAC	4 cut(s)	238, 370, 561, 676
TseI	GCWGC	9 cut(s)	168, 440, 543, 590, 626, 749, 764, 794, 878
Tsp45I	GTSAC	4 cut(s)	238, 370, 561, 676
TspDTI	ATGAA	3 cut(s)	495, 878, 917
TspGWI	ACGGA	3 cut(s)	132, 210, 589
XceI	RCATGY	1 cut(s)	506
XhoI	CTCGAG	1 cut(s)	687
XspI	CTAG	1 cut(s)	473
ZraI	GACGTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.