Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011430

Physical Location & Seq

Genomic Coordinates Reverse (-)

44769105 .. 44772927

Gene Structure 3823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003137

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAGCTTCCGCTCATATCGCTAGCCACTACTACTAGTACTTTCACGGCGTCGTTTGGCAGTAAGCTCGGGCTGTGCGATTTTCCGGTGACGAGAAAGAGGCGGACGGGTTTGTTCGACGGAGGTAGGGTTTGTGTAAGGCAGGTTAGGGCTTCGGCGGAGCGGAGGAGTAGCGAGGGTATTAATGGAAGTGAGGCGGAGAGTAGAGGAAGGCGGTTCACGAGTCCTGCCATGGAGGTCACCACATTGAATCCGAGCTTCAATGAAGCTGAGTATCCTGTTTGGGAGAAGATTGGTGCTGTTGTTAGACTTAGTTATGGAATTGGTATATACGGTGCAATGGCTTTGGCGGGTAGATTTATATGCTCAATGATGGGTATCGATATCATGGGGGGTTTCGAGTTAAATTTAGATGCAATTGTACAAGGGCTTGGATATGCAGCTCCACCAATCATGGCGCTTCTTTTTATACTCGATGATGAAGTTGTAAAGTTATCACCTCATGCACGTGCAATTAGAGACGTAGAGGATGAGGAGCTCCGCAGTTTCTTTTATGGAATGTCACCATTTCAGTTCATACTAATTGTTACTGCAAGCTCTTTGGGGGAGGAACTTTTCTACAGGGCTGCTGTTCAGGGATCATTGGCCGAGATCTTTTTGAAGGGCACAGATCTGGTGACAGACGTTCGAGGAATGGCAACTCTGTCTGGGGTTCTACCCCCATTTGTCCCATTTGCTCAGGCATTTGCAGCAGTGATCACAGCTGCTCTTACAGGTTCTTTGTACTATGTGGCTGCCTCTCCAAAAGATCCTGCTTATGTAGTTGCACCAGTTTTACAATCTCGCTCTGGTCGTGAAGATCTGAAAAAGCTGTTTGCAGGTTCAATCCCTTGCCCCAGCATAAATTTCATTGCATCCATTTTGTTTCACATAATCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

314

Amino Acids

33.83

Weight (kDa)

5.84

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35260
fragaria_vesca	FvH4_5g21880
malus_domestica	MD00G1220600.v1.1 MD06G1033000.v1.1
prunus_persica	Prupe.5G038500_v2.0.a1
pyrus_communis	pycom06g02730
rosa_chinensis	RchiOBHm_Chr6g0284251 RchiOBHm_Chr7g0209431
rosa_laevigata	RLG00000003137
rosa_multiflora	Rmu_sc0001861.1_g000004 Rmu_sc0007059.1_g000001 Rmu_sc0015095.1_g000003
rosa_roxburghii	Rroxscaffold_3G00249470 Rroxscaffold_3G00250390
rosa_rugosa	Rorug07G0112500
rosa_samantha	Rh7AG246700 Rh7BG241700 Rh7CG262300 Rh7DG252900
rosa_wichuraiana	Rw7G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	133, 869
AccBSI	CCGCTC	2 cut(s)	13, 163
AciI	CCGC	8 cut(s)	11, 103, 158, 163, 197, 214, 350, 541
AclWI	GGATC	2 cut(s)	646, 803
AcoI	YGGCCR	1 cut(s)	645
AcsI	RAATTY	2 cut(s)	406, 904
AcvI	CACGTG	1 cut(s)	509
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	3 cut(s)	40, 423, 785
AgsI	TTSAA	4 cut(s)	250, 262, 661, 885
AhlI	ACTAGT	1 cut(s)	35
AluBI	AGCT	9 cut(s)	7, 67, 258, 269, 443, 538, 597, 764, 871
AluI	AGCT	9 cut(s)	7, 67, 258, 269, 443, 538, 597, 764, 871
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	1 cut(s)	513
AlwI	GGATC	2 cut(s)	646, 803
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	645
ApeKI	GCWGC	5 cut(s)	440, 626, 749, 764, 794
ApoI	RAATTY	2 cut(s)	406, 904
AseI	ATTAAT	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	460
AsuHPI	GGTGA	5 cut(s)	100, 232, 489, 555, 688
AsuNHI	GCTAGC	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	668
BanII	GRGCYC	1 cut(s)	540
BauI	CACGAG	1 cut(s)	220
BbrPI	CACGTG	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	5 cut(s)	452, 613, 751, 761, 781
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	1 cut(s)	63
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciVI	GTATCC	1 cut(s)	285
BclI	TGATCA	1 cut(s)	756
BcoDI	GTCTC	1 cut(s)	513
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	2 cut(s)	23, 36
BfmI	CTRYAG	1 cut(s)	619
BfoI	RGCGCY	1 cut(s)	461
BfuAI	ACCTGC	2 cut(s)	133, 869
BfuI	GTATCC	1 cut(s)	285
BglII	AGATCT	3 cut(s)	651, 670, 859
BisI	GCNGC	5 cut(s)	441, 627, 750, 765, 795
BlsI	GCNGC	5 cut(s)	442, 628, 751, 766, 796
BmcAI	AGTACT	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	68
BmsI	GCATC	2 cut(s)	403, 923
BmtI	GCTAGC	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	738
Bsa29I	ATCGAT	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	85
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bse1I	ACTGG	1 cut(s)	830
Bse3DI	GCAATG	2 cut(s)	345, 909
Bse8I	GATNNNNATC	1 cut(s)	377
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	535, 914
BseJI	GATNNNNATC	1 cut(s)	377
BseMI	GCAATG	2 cut(s)	345, 909
BseMII	CTCAG	2 cut(s)	261, 752
BseNI	ACTGG	1 cut(s)	830
BseRI	GAGGAG	2 cut(s)	181, 548
BseSI	GKGCMC	1 cut(s)	668
BseXI	GCAGC	5 cut(s)	452, 613, 751, 761, 781
BseYI	CCCAGC	1 cut(s)	896
BshFI	GGCC	1 cut(s)	647
BshVI	ATCGAT	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	713
BsmAI	GTCTC	1 cut(s)	513
BsmBI	CGTCTC	1 cut(s)	513
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	1 cut(s)	647
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	540, 668
Bsp1407I	TGTACA	1 cut(s)	421
Bsp143I	GATC	6 cut(s)	638, 651, 670, 756, 808, 859
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	8 cut(s)	11, 103, 158, 163, 197, 214, 350, 541
BspANI	GGCC	1 cut(s)	647
BspCNI	CTCAG	2 cut(s)	262, 751
BspDI	ATCGAT	1 cut(s)	381
BspMI	ACCTGC	2 cut(s)	133, 869
BspOI	GCTAGC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	646, 803
BsrBI	CCGCTC	2 cut(s)	13, 163
BsrDI	GCAATG	2 cut(s)	345, 909
BsrGI	TGTACA	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	830
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	6 cut(s)	638, 651, 670, 756, 808, 859
BssNI	GRCGYC	1 cut(s)	50
BssSI	CACGAG	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	231
Bst2BI	CACGAG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	335
BstACI	GRCGYC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	421
BstBAI	YACGTR	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	24, 595
BstDEI	CTNAG	3 cut(s)	270, 311, 738
BstDSI	CCRYGG	1 cut(s)	231
BstEII	GGTNACC	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	535, 914
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	6 cut(s)	641, 654, 673, 759, 811, 862
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	6 cut(s)	638, 651, 670, 756, 808, 859
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 749
BstPI	GGTNACC	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	619
BstSLI	GKGCMC	1 cut(s)	668
BstV1I	GCAGC	5 cut(s)	452, 613, 751, 761, 781
BstX2I	RGATCY	4 cut(s)	651, 670, 808, 859
BstYI	RGATCY	4 cut(s)	651, 670, 808, 859
Bsu15I	ATCGAT	1 cut(s)	381
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	647
BsuTUI	ATCGAT	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	535, 914
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	1 cut(s)	759
BveI	ACCTGC	2 cut(s)	133, 869
Cac8I	GCNNGC	2 cut(s)	24, 595
CfoI	GCGC	1 cut(s)	460
ClaI	ATCGAT	1 cut(s)	381
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	3 cut(s)	39, 422, 784
CviAII	CATG	4 cut(s)	232, 388, 454, 503
CviQI	GTAC	3 cut(s)	39, 422, 784
DdeI	CTNAG	3 cut(s)	270, 311, 738
DpnI	GATC	6 cut(s)	640, 653, 672, 758, 810, 861
DpnII	GATC	6 cut(s)	638, 651, 670, 756, 808, 859
EaeI	YGGCCR	1 cut(s)	645
EciI	GGCGGA	3 cut(s)	118, 173, 212
Ecl136II	GAGCTC	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	540
Eco32I	GATATC	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	538
Eco72I	CACGTG	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	68
Eco91I	GGTNACC	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	538
EcoO65I	GGTNACC	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	513
FaeI	CATG	4 cut(s)	235, 391, 457, 506
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	4 cut(s)	231, 387, 453, 502
FauI	CCCGC	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	756
Fnu4HI	GCNGC	5 cut(s)	441, 627, 750, 765, 795
FokI	GGATG	2 cut(s)	542, 901
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	5 cut(s)	441, 627, 750, 765, 795
FspBI	CTAG	2 cut(s)	23, 36
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	5 cut(s)	441, 627, 750, 765, 795
GsaI	CCCAGC	1 cut(s)	900
HaeII	RGCGCY	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	647
HapII	CCGG	1 cut(s)	86
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	1 cut(s)	460
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	4 cut(s)	235, 391, 457, 506
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HinfI	GANTC	2 cut(s)	223, 250
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	5 cut(s)	100, 232, 489, 555, 688
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	2 cut(s)	255, 864
Hpy188III	TCNNGA	2 cut(s)	220, 854
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	2 cut(s)	55, 122
HpyAV	CCTTC	2 cut(s)	204, 655
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	3 cut(s)	508, 522, 684
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 749
HpyF3I	CTNAG	3 cut(s)	270, 311, 738
HpySE526I	ACGT	3 cut(s)	508, 522, 684
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	4 cut(s)	235, 391, 457, 506
HspAI	GCGC	1 cut(s)	458
Ksp22I	TGATCA	1 cut(s)	756
Kzo9I	GATC	6 cut(s)	638, 651, 670, 756, 808, 859
LmnI	GCTCC	5 cut(s)	4, 160, 448, 535, 543
Lsp1109I	GCAGC	5 cut(s)	452, 613, 751, 761, 781
LweI	GCATC	2 cut(s)	403, 923
MaeI	CTAG	2 cut(s)	23, 36
MaeII	ACGT	3 cut(s)	508, 522, 684
MaeIII	GTNAC	5 cut(s)	88, 238, 561, 586, 676
MalI	GATC	6 cut(s)	640, 653, 672, 758, 810, 861
MbiI	CCGCTC	2 cut(s)	13, 163
MboI	GATC	6 cut(s)	638, 651, 670, 756, 808, 859
MboII	GAAGA	2 cut(s)	301, 869
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	4 cut(s)	651, 670, 808, 859
MhlI	GDGCHC	2 cut(s)	540, 668
MluCI	AATT	6 cut(s)	321, 406, 417, 513, 582, 904
MlyI	GAGTC	1 cut(s)	232
MseI	TTAA	3 cut(s)	183, 404, 940
MslI	CAYNNNNRTG	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	764
MspI	CCGG	1 cut(s)	86
MunI	CAATTG	1 cut(s)	417
MwoI	GCNNNNNNNGC	2 cut(s)	19, 749
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	6 cut(s)	638, 651, 670, 756, 808, 859
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	4 cut(s)	235, 391, 457, 506
NmeAIII	GCCGAG	1 cut(s)	673
NmuCI	GTSAC	4 cut(s)	88, 238, 561, 676
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 850
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	5 cut(s)	442, 628, 751, 766, 796
PleI	GAGTC	1 cut(s)	231
PmaCI	CACGTG	1 cut(s)	509
PmlI	CACGTG	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	231
Ppu21I	YACGTR	1 cut(s)	509
PshBI	ATTAAT	1 cut(s)	183
Psp124BI	GAGCTC	1 cut(s)	540
PspCI	CACGTG	1 cut(s)	509
PspEI	GGTNACC	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	896
PsuI	RGATCY	4 cut(s)	651, 670, 808, 859
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	3 cut(s)	40, 423, 785
RsaNI	GTAC	3 cut(s)	39, 422, 784
RseI	CAYNNNNRTG	1 cut(s)	507
SacI	GAGCTC	1 cut(s)	540
SaqAI	TTAA	3 cut(s)	183, 404, 940
SatI	GCNGC	5 cut(s)	441, 627, 750, 765, 795
Sau3AI	GATC	6 cut(s)	638, 651, 670, 756, 808, 859
ScaI	AGTACT	1 cut(s)	40
SchI	GAGTC	1 cut(s)	232
SduI	GDGCHC	2 cut(s)	540, 668
SfaNI	GCATC	2 cut(s)	403, 923
SfcI	CTRYAG	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	507
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	6 cut(s)	321, 406, 417, 513, 582, 904
SsiI	CCGC	8 cut(s)	11, 103, 158, 163, 197, 214, 350, 541
SspMI	CTAG	2 cut(s)	23, 36
SstI	GAGCTC	1 cut(s)	540
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	3 cut(s)	511, 525, 687
TaqI	TCGA	5 cut(s)	117, 381, 399, 474, 688
TasI	AATT	6 cut(s)	321, 406, 417, 513, 582, 904
TatI	WGTACW	3 cut(s)	38, 421, 783
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	3 cut(s)	183, 404, 940
Tru9I	TTAA	3 cut(s)	183, 404, 940
TscAI	CASTG	1 cut(s)	759
TseFI	GTSAC	4 cut(s)	88, 238, 561, 676
TseI	GCWGC	5 cut(s)	440, 626, 749, 764, 794
Tsp45I	GTSAC	4 cut(s)	88, 238, 561, 676
TspDTI	ATGAA	4 cut(s)	279, 495, 565, 898
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	759
VspI	ATTAAT	1 cut(s)	183
XapI	RAATTY	2 cut(s)	406, 904
XspI	CTAG	2 cut(s)	23, 36
ZrmI	AGTACT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.