Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011430

Physical Location & Seq

Genomic Coordinates Forward (+)

3281288 .. 3284764

Gene Structure 3477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02730.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGCTGAAGCTGAAGGAATGCTCAACCAAGACGACGAAGACTCGTTTCAGCCCAATATCTCGGTCCGAACGGCGTCGTTTTTGGCATTTCATTACTAGCTTACATACCATGGAGCTTCCGTGCATATCGTTCACCGTTCCTAATCCTCCGACGGTGCTGTTTTGCGGCAAACTCGGCCTCTGTTATTTCCCGGTGGCGAGAAAGCGGCGGACGGCTTTGTTGGACGGAGCTTCTAGGGTTTCGGTTCGGGCGGTGAGGGGGTCGACGGAGCAACGAGGCAGTGAAAGCATTGACGGCAGAGATGGAGAGAGCCGTGGGGGAGGCGGGTTCACGAGCCCTGCCATGGAGGTCAGCACGTTCAATTCGAGCTTCGGCGAAGCTGAGTTTCCCGTTTGGGAAAAGATTGGGGCTGTTGTTAGACTTAGCTATGGAATAGGTATATATGGAGCAATGGCTGTATTAGGAAGATTTATATGTTCCGTGACGGGGATCGATAGCATGGGAGGTTTCCAAGTATCTTTAGATGCAATTGTACAAGGGCTTGGCTATGCAGCTCCACCAATTATGGCCCTTCTTTTCATACTAGATGATGAAGTTGTGAAGGTATCTCCTCATGCTCGTGCTATTCGAGATGTAGAGGATGAAGAGCTTCGAAGCTTCTTTTACGGAATGTCACCTTTGCAGTTTATACTAATTGTTGCTGCAAGCTCTGTGGGTGAGGAGCTTTTCTACAGGGCTGCTGTTCAGGGATCATTGGCCGATATATTTCTAAGGGGCACAGATCTGTTGACAGATGCTCGAGGAATGGCGTCTCTGACTGGAGTTCTGCCCCCATTTGTCCCTTTTGCTCAGGCGTTTGCAGCGGTGATTACAGCTGCGCTCACAGGTTCTCTGTACTATGTGGCAGCTTCTCCAAAAGATCCTGCTTATGTAGTTGCACCAGTTTTACAATCTCGCTCTGGTCGTGAAGACATGAAAAAGCTTTTTGCAGCTTGGTATCAGAGGAGACAAATGAAGAAGATTTACTCTCCCCTGCTTGAAGGACTTCTTGCCCTATATCTTGGTTTTGAGTGGATCCAGACGAACAATATGCTTACGCCTATGATCACGCACGGCATATACTCCGCTGTGATACTGGGTCATGGCCTTTGGAAGATACACGATCATCGGAAAAGACTACGCCAGAGGATCCAGCAGCTTAAAGTAGAAGGAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

407

Amino Acids

44.81

Weight (kDa)

9.54

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35260
fragaria_vesca	FvH4_5g21880
malus_domestica	MD00G1220600.v1.1 MD06G1033000.v1.1
prunus_persica	Prupe.5G038500_v2.0.a1
pyrus_communis	pycom06g02730
rosa_chinensis	RchiOBHm_Chr6g0284251 RchiOBHm_Chr7g0209431
rosa_laevigata	RLG00000003137
rosa_multiflora	Rmu_sc0001861.1_g000004 Rmu_sc0007059.1_g000001 Rmu_sc0015095.1_g000003
rosa_roxburghii	Rroxscaffold_3G00249470 Rroxscaffold_3G00250390
rosa_rugosa	Rorug07G0112500
rosa_samantha	Rh7AG246700 Rh7BG241700 Rh7CG262300 Rh7DG252900
rosa_wichuraiana	Rw7G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	263
AciI	CCGC	7 cut(s)	165, 205, 208, 251, 324, 863, 1125
AclWI	GGATC	7 cut(s)	497, 757, 914, 1069, 1082, 1183, 1196
AcoI	YGGCCR	1 cut(s)	756
AcuI	CTGAAG	2 cut(s)	26, 32
AcyI	GRCGYC	2 cut(s)	73, 809
AfaI	GTAC	2 cut(s)	534, 896
AfiI	CCNNNNNNNGG	2 cut(s)	343, 486
AgsI	TTSAA	2 cut(s)	361, 1040
Alw26I	GTCTC	2 cut(s)	816, 1000
AlwI	GGATC	7 cut(s)	497, 757, 914, 1069, 1082, 1183, 1196
Ama87I	CYCGRG	1 cut(s)	798
AoxI	GGCC	4 cut(s)	175, 567, 756, 1144
ApeKI	GCWGC	8 cut(s)	551, 701, 737, 860, 875, 905, 989, 1195
Asp700I	GAANNNNTTC	2 cut(s)	648, 1044
AspLEI	GCGC	1 cut(s)	880
AspS9I	GGNCC	2 cut(s)	63, 568
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	5 cut(s)	124, 265, 666, 728, 877
AsuII	TTCGAA	1 cut(s)	652
AvaI	CYCGRG	1 cut(s)	798
AvaII	GGWCC	1 cut(s)	63
BaeGI	GKGCMC	1 cut(s)	779
BamHI	GGATCC	2 cut(s)	1074, 1188
BanII	GRGCYC	1 cut(s)	338
BarI	GAAGNNNNNNTAC	2 cut(s)	1007, 1039
BauI	CACGAG	2 cut(s)	331, 618
BbsI	GAAGAC	2 cut(s)	44, 975
BbvI	GCAGC	8 cut(s)	563, 688, 724, 862, 872, 917, 1001, 1207
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	5 cut(s)	86, 228, 297, 310, 1129
BcgI	CGANNNNNNTGC	2 cut(s)	1072, 1106
BclI	TGATCA	1 cut(s)	1104
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	816, 1000
BfaI	CTAG	3 cut(s)	96, 234, 584
BfmI	CTRYAG	1 cut(s)	730
BglII	AGATCT	1 cut(s)	781
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	63
BmeT110I	CYCGRG	1 cut(s)	798
BmgT120I	GGNCC	2 cut(s)	63, 568
BmiI	GGNNCC	2 cut(s)	1076, 1190
BmrFI	CCNGG	1 cut(s)	191
BmrI	ACTGGG	1 cut(s)	1145
BmsI	GCATC	2 cut(s)	514, 784
BmuI	ACTGGG	1 cut(s)	1145
BpiI	GAAGAC	2 cut(s)	44, 975
BpmI	CTGGAG	1 cut(s)	840
Bpu10I	CCTNAGC	1 cut(s)	849
Bpu14I	TTCGAA	1 cut(s)	652
BpuMI	CCSGG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	492
BsaHI	GRCGYC	2 cut(s)	73, 809
BsaJI	CCNNGG	3 cut(s)	108, 313, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 486
Bse1I	ACTGG	3 cut(s)	823, 941, 1140
Bse3DI	GCAATG	1 cut(s)	456
BseCI	ATCGAT	1 cut(s)	492
BseDI	CCNNGG	3 cut(s)	108, 313, 342
BseGI	GGATG	1 cut(s)	646
BseLI	CCNNNNNNNGG	2 cut(s)	343, 486
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	2 cut(s)	372, 863
BseNI	ACTGG	3 cut(s)	823, 941, 1140
BseRI	GAGGAG	3 cut(s)	600, 734, 1018
BseSI	GKGCMC	1 cut(s)	779
BseXI	GCAGC	8 cut(s)	563, 688, 724, 862, 872, 917, 1001, 1207
BshFI	GGCC	4 cut(s)	177, 569, 758, 1146
BshVI	ATCGAT	1 cut(s)	492
BsiHKCI	CYCGRG	1 cut(s)	798
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	2 cut(s)	343, 486
BsmAI	GTCTC	2 cut(s)	816, 1000
BsmBI	CGTCTC	1 cut(s)	816
BsmFI	GGGAC	1 cut(s)	824
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	4 cut(s)	177, 569, 758, 1146
BsoBI	CYCGRG	1 cut(s)	798
Bsp119I	TTCGAA	1 cut(s)	652
Bsp1286I	GDGCHC	2 cut(s)	338, 779
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	8 cut(s)	489, 749, 781, 919, 1074, 1104, 1162, 1188
Bsp19I	CCATGG	2 cut(s)	108, 342
BspACI	CCGC	7 cut(s)	165, 205, 208, 251, 324, 863, 1125
BspANI	GGCC	4 cut(s)	177, 569, 758, 1146
BspCNI	CTCAG	2 cut(s)	373, 862
BspDI	ATCGAT	1 cut(s)	492
BspLI	GGNNCC	2 cut(s)	1076, 1190
BspPI	GGATC	7 cut(s)	497, 757, 914, 1069, 1082, 1183, 1196
BspQI	GCTCTTC	1 cut(s)	639
BspT104I	TTCGAA	1 cut(s)	652
BsrDI	GCAATG	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	3 cut(s)	823, 941, 1140
BssECI	CCNNGG	3 cut(s)	108, 313, 342
BssMI	GATC	8 cut(s)	489, 749, 781, 919, 1074, 1104, 1162, 1188
BssNI	GRCGYC	2 cut(s)	73, 809
BssSI	CACGAG	2 cut(s)	331, 618
BssT1I	CCWWGG	2 cut(s)	108, 342
Bst2BI	CACGAG	2 cut(s)	331, 618
Bst4CI	ACNGT	2 cut(s)	136, 154
Bst6I	CTCTTC	1 cut(s)	639
BstACI	GRCGYC	2 cut(s)	73, 809
BstAUI	TGTACA	1 cut(s)	532
BstBI	TTCGAA	1 cut(s)	652
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	4 cut(s)	381, 422, 770, 849
BstDSI	CCRYGG	3 cut(s)	108, 313, 342
BstF5I	GGATG	1 cut(s)	646
BstHHI	GCGC	1 cut(s)	880
BstKTI	GATC	8 cut(s)	492, 752, 784, 922, 1077, 1107, 1165, 1191
BstMAI	GTCTC	2 cut(s)	816, 1000
BstMBI	GATC	8 cut(s)	489, 749, 781, 919, 1074, 1104, 1162, 1188
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 285, 294, 860
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	730
BstSLI	GKGCMC	1 cut(s)	779
BstV1I	GCAGC	8 cut(s)	563, 688, 724, 862, 872, 917, 1001, 1207
BstV2I	GAAGAC	2 cut(s)	44, 975
BstX2I	RGATCY	4 cut(s)	781, 919, 1074, 1188
BstYI	RGATCY	4 cut(s)	781, 919, 1074, 1188
Bsu15I	ATCGAT	1 cut(s)	492
BsuRI	GGCC	4 cut(s)	177, 569, 758, 1146
BsuTUI	ATCGAT	1 cut(s)	492
BtgI	CCRYGG	3 cut(s)	108, 313, 342
BtsCI	GGATG	1 cut(s)	646
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	706
CfoI	GCGC	1 cut(s)	880
Cfr13I	GGNCC	2 cut(s)	63, 568
ClaI	ATCGAT	1 cut(s)	492
CpoI	CGGWCCG	1 cut(s)	63
CseI	GACGC	2 cut(s)	62, 798
Csp6I	GTAC	2 cut(s)	533, 895
CspCI	CAANNNNNGTGG	2 cut(s)	693, 728
CspI	CGGWCCG	1 cut(s)	63
CviAII	CATG	6 cut(s)	109, 343, 499, 614, 973, 1142
CviQI	GTAC	2 cut(s)	533, 895
DdeI	CTNAG	4 cut(s)	381, 422, 770, 849
DpnI	GATC	8 cut(s)	491, 751, 783, 921, 1076, 1106, 1164, 1190
DpnII	GATC	8 cut(s)	489, 749, 781, 919, 1074, 1104, 1162, 1188
EaeI	YGGCCR	1 cut(s)	756
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
EciI	GGCGGA	1 cut(s)	223
Eco130I	CCWWGG	2 cut(s)	108, 342
Eco24I	GRGCYC	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	63
Eco57I	CTGAAG	2 cut(s)	26, 32
Eco88I	CYCGRG	1 cut(s)	798
EcoT14I	CCWWGG	2 cut(s)	108, 342
EcoT38I	GRGCYC	1 cut(s)	338
ErhI	CCWWGG	2 cut(s)	108, 342
Esp3I	CGTCTC	1 cut(s)	816
FaeI	CATG	6 cut(s)	112, 346, 502, 617, 976, 1145
FalI	AAGNNNNNCTT	2 cut(s)	1032, 1064
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	6 cut(s)	108, 342, 498, 613, 972, 1141
FauI	CCCGC	1 cut(s)	317
FbaI	TGATCA	1 cut(s)	1104
FblI	GTMKAC	1 cut(s)	263
FokI	GGATG	1 cut(s)	653
FriOI	GRGCYC	1 cut(s)	338
FspBI	CTAG	3 cut(s)	96, 234, 584
GlaI	GCGC	1 cut(s)	879
GsuI	CTGGAG	1 cut(s)	840
HaeIII	GGCC	4 cut(s)	177, 569, 758, 1146
HapII	CCGG	1 cut(s)	191
HgaI	GACGC	2 cut(s)	62, 798
HhaI	GCGC	1 cut(s)	880
Hin1I	GRCGYC	2 cut(s)	73, 809
Hin1II	CATG	6 cut(s)	112, 346, 502, 617, 976, 1145
Hin6I	GCGC	1 cut(s)	878
HinP1I	GCGC	1 cut(s)	878
HincII	GTYRAC	2 cut(s)	264, 789
HindII	GTYRAC	2 cut(s)	264, 789
HindIII	AAGCTT	2 cut(s)	655, 980
HinfI	GANTC	1 cut(s)	40
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	5 cut(s)	124, 265, 666, 728, 877
Hpy166II	GTNNAC	4 cut(s)	132, 264, 330, 789
Hpy188I	TCNGA	5 cut(s)	67, 150, 816, 1002, 1170
Hpy188III	TCNNGA	4 cut(s)	331, 629, 965, 1078
Hpy8I	GTNNAC	4 cut(s)	132, 264, 330, 789
Hpy99I	CGWCG	4 cut(s)	37, 78, 154, 268
HpyAV	CCTTC	5 cut(s)	7, 581, 595, 1034, 1202
HpyCH4III	ACNGT	2 cut(s)	136, 154
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	8 cut(s)	123, 527, 551, 682, 704, 860, 938, 989
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 285, 294, 860
HpyF3I	CTNAG	4 cut(s)	381, 422, 770, 849
HpySE526I	ACGT	1 cut(s)	356
Hsp92I	GRCGYC	2 cut(s)	73, 809
Hsp92II	CATG	6 cut(s)	112, 346, 502, 617, 976, 1145
HspAI	GCGC	1 cut(s)	878
Ksp22I	TGATCA	1 cut(s)	1104
Kzo9I	GATC	8 cut(s)	489, 749, 781, 919, 1074, 1104, 1162, 1188
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	6 cut(s)	112, 227, 268, 446, 559, 721
Lsp1109I	GCAGC	8 cut(s)	563, 688, 724, 862, 872, 917, 1001, 1207
LweI	GCATC	2 cut(s)	514, 784
MaeI	CTAG	3 cut(s)	96, 234, 584
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	481, 672
MalI	GATC	8 cut(s)	491, 751, 783, 921, 1076, 1106, 1164, 1190
MboI	GATC	8 cut(s)	489, 749, 781, 919, 1074, 1104, 1162, 1188
MboII	GAAGA	7 cut(s)	49, 477, 656, 980, 1027, 1030, 1165
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	4 cut(s)	781, 919, 1074, 1188
MhlI	GDGCHC	2 cut(s)	338, 779
MluCI	AATT	4 cut(s)	361, 528, 561, 693
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	2 cut(s)	173, 201
MroXI	GAANNNNTTC	2 cut(s)	648, 1044
MseI	TTAA	1 cut(s)	1200
MslI	CAYNNNNRTG	1 cut(s)	618
MspA1I	CMGCKG	3 cut(s)	863, 875, 1127
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	191
MunI	CAATTG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	23
MwoI	GCNNNNNNNGC	4 cut(s)	174, 285, 294, 860
NciI	CCSGG	1 cut(s)	191
NcoI	CCATGG	2 cut(s)	108, 342
NdeII	GATC	8 cut(s)	489, 749, 781, 919, 1074, 1104, 1162, 1188
NlaIII	CATG	6 cut(s)	112, 346, 502, 617, 976, 1145
NlaIV	GGNNCC	2 cut(s)	1076, 1190
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	481, 672
NspV	TTCGAA	1 cut(s)	652
PaeR7I	CTCGAG	1 cut(s)	798
PciSI	GCTCTTC	1 cut(s)	639
PcsI	WCGNNNNNNNCGW	3 cut(s)	362, 625, 961
PctI	GAATGC	1 cut(s)	23
PdmI	GAANNNNTTC	2 cut(s)	648, 1044
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	1076, 1190
PspPI	GGNCC	2 cut(s)	63, 568
PspXI	VCTCGAGB	1 cut(s)	798
PsuI	RGATCY	4 cut(s)	781, 919, 1074, 1188
PvuII	CAGCTG	1 cut(s)	875
RsaI	GTAC	2 cut(s)	534, 896
RsaNI	GTAC	2 cut(s)	533, 895
RseI	CAYNNNNRTG	1 cut(s)	618
Rsr2I	CGGWCCG	1 cut(s)	63
RsrII	CGGWCCG	1 cut(s)	63
SalI	GTCGAC	1 cut(s)	262
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	1 cut(s)	1200
Sau3AI	GATC	8 cut(s)	489, 749, 781, 919, 1074, 1104, 1162, 1188
Sau96I	GGNCC	2 cut(s)	63, 568
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	338, 779
SfaNI	GCATC	2 cut(s)	514, 784
SfcI	CTRYAG	1 cut(s)	730
Sfr274I	CTCGAG	1 cut(s)	798
SfuI	TTCGAA	1 cut(s)	652
SinI	GGWCC	1 cut(s)	63
SlaI	CTCGAG	1 cut(s)	798
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	1 cut(s)	798
SmoI	CTYRAG	1 cut(s)	798
Sse9I	AATT	4 cut(s)	361, 528, 561, 693
SsiI	CCGC	7 cut(s)	165, 205, 208, 251, 324, 863, 1125
SspMI	CTAG	3 cut(s)	96, 234, 584
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	2 cut(s)	108, 342
TaaI	ACNGT	2 cut(s)	136, 154
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	6 cut(s)	263, 365, 492, 628, 652, 799
TaqII	GACCGA	1 cut(s)	51
TasI	AATT	4 cut(s)	361, 528, 561, 693
TatI	WGTACW	2 cut(s)	532, 894
TauI	GCSGC	2 cut(s)	168, 208
Tru1I	TTAA	1 cut(s)	1200
Tru9I	TTAA	1 cut(s)	1200
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	2 cut(s)	481, 672
TseI	GCWGC	8 cut(s)	551, 701, 737, 860, 875, 905, 989, 1195
Tsp45I	GTSAC	2 cut(s)	481, 672
TspDTI	ATGAA	6 cut(s)	79, 568, 606, 657, 989, 1028
TspGWI	ACGGA	5 cut(s)	108, 240, 281, 469, 681
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	63
XhoI	CTCGAG	1 cut(s)	798
XmiI	GTMKAC	1 cut(s)	263
XmnI	GAANNNNTTC	2 cut(s)	648, 1044
XspI	CTAG	3 cut(s)	96, 234, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.