Rh7DG252900

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011430
Physical Location & Seq
Forward (+)
26280301 .. 26283605
3305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG252900.1

Sequence Viewer

Length: 1110 bp
ATGGAGCTTCCGCTCATATCGCTAGCCGCTACTACTAGTACTTCCACGGCGTCGTTTGGCAGTAAGCTCGGGCTGTGCGATTTTCCGGTGACGAGAAGGAGGCGGACGGGTTTGTTCGACGGAGGTAGGGTTTCTGTGCGGCAGGTTAGGGCTTCGGCGGAGCAGAGGAGTAGCGACGGTATTAATGGAAGTGAGGGGGAGAGTGGAGGACGGCGGTTCACCAGTCCTGCCATGGAGGTCACCACATTGAATCCGAGCTTCAATGAAGCTGAGTATCCTGTTTGGGAGAAGATTGGTGCTGTTGTTAGGCTTAGTTATGGAATTGGTATATATGGTGCAATGGCTTTAGCGGGTAGATTTATATGCTCAATGATGGGTATCGATATCGTGGGAGGTTTCGAGTTAAATTTAGATGCAATTGTACAAGGGCTTGGATATGCAGCTCCACCAATCATGGCGCTTCTTTTTATACTCGATGATGAAGTTGTAAAGTTATCACCTCATGCACGTGCAATTAGAGACGTAGAGGATGAGGAGCTGCGCAGTTTCTTTTACGGAATGTCACCGTTGCAGTTCATACTAATTGTTACTGCAAGCTCTTTGGGAGAGGAACTTTTCTACAGGGCTGCTGTTCAGGGATCATTAGCCGAGATATTTTTGAAGGGAACAGATCTGGTGACAGACATTCGAGGAATGGCATCTCTGTCTGGGGTTCTACCCCCATTTGTCCCATTTGCTCAGGCATTTGCAGCAGTGATCACAGCTGCTCTTACAGGTTCTTTGTACTATGTGGCTGCCTCTCCAAAAGATCCTGCTTATGTAGTTGCACCAGTTTTACAATCTCGCTCTGGTCGTGAAGATCTGAAAAAGCTGTTTGCAGCTTGGTATCAGAGAAGGCAAATGAAGAAGATCTACTCTCCCCTCCTTGAAGGACTTTTGGCCCTCTATCTCGGTTTTGAGTGGAACCAGACGAATAATCTTCTTGCACCTATGATCACCCACGGCATATATTCTGCTGTGATATTGGGTCATGGCCTTTGGAAGATACATGATCATCGTAAACGACTACATCAGAGAATCGAGCAGCTTAAAGAACAAAGTAGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

369

Amino Acids

40.47

Weight (kDa)

7.77

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rce1-like PF02517 189 - 339 7e-06 Type II CAAX prenyl endopeptidase Rce1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 542
Acc36I ACCTGC 1 cut(s) 133
AccBSI CCGCTC 1 cut(s) 13
AciI CCGC 7 cut(s) 11, 27, 103, 139, 158, 214, 350
AclWI GGATC 2 cut(s) 646, 803
AcsI RAATTY 1 cut(s) 406
AcvI CACGTG 1 cut(s) 509
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 3 cut(s) 40, 423, 785
AgsI TTSAA 4 cut(s) 250, 262, 661, 929
AhlI ACTAGT 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 513
AlwI GGATC 2 cut(s) 646, 803
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 2 cut(s) 939, 1033
ApeKI GCWGC 8 cut(s) 440, 538, 626, 749, 764, 794, 878, 1084
ApoI RAATTY 1 cut(s) 406
AseI ATTAAT 1 cut(s) 183
AspLEI GCGC 2 cut(s) 460, 543
AspS9I GGNCC 1 cut(s) 940
AsuHPI GGTGA 7 cut(s) 100, 211, 232, 489, 555, 688, 988
AsuNHI GCTAGC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 896, 928
BbrPI CACGTG 1 cut(s) 509
BbvI GCAGC 8 cut(s) 452, 525, 613, 751, 761, 781, 890, 1096
BccI CCATC 1 cut(s) 367
BceAI ACGGC 3 cut(s) 63, 227, 1018
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciVI GTATCC 1 cut(s) 285
BclI TGATCA 3 cut(s) 756, 993, 1051
BcoDI GTCTC 1 cut(s) 513
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 2 cut(s) 23, 36
BfmI CTRYAG 1 cut(s) 619
BfoI RGCGCY 1 cut(s) 461
BfuAI ACCTGC 1 cut(s) 133
BfuI GTATCC 1 cut(s) 285
BglII AGATCT 3 cut(s) 670, 859, 909
BmcAI AGTACT 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 940
BmiI GGNNCC 1 cut(s) 965
BmsI GCATC 2 cut(s) 403, 707
BmtI GCTAGC 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 738
Bsa29I ATCGAT 1 cut(s) 381
BsaAI YACGTR 1 cut(s) 509
BsaBI GATNNNNATC 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 45, 231, 1000
BsaWI WCCGGW 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bse1I ACTGG 2 cut(s) 222, 830
Bse3DI GCAATG 1 cut(s) 345
Bse8I GATNNNNATC 1 cut(s) 377
BseCI ATCGAT 1 cut(s) 381
BseDI CCNNGG 3 cut(s) 45, 231, 1000
BseGI GGATG 1 cut(s) 535
BseJI GATNNNNATC 1 cut(s) 377
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 261, 752
BseNI ACTGG 2 cut(s) 222, 830
BseRI GAGGAG 2 cut(s) 181, 548
BseXI GCAGC 8 cut(s) 452, 525, 613, 751, 761, 781, 890, 1096
BshFI GGCC 2 cut(s) 941, 1035
BshVI ATCGAT 1 cut(s) 381
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 713
BsmAI GTCTC 1 cut(s) 513
BsmBI CGTCTC 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 713
BsnI GGCC 2 cut(s) 941, 1035
BsoBI CYCGRG 1 cut(s) 68
Bsp1407I TGTACA 1 cut(s) 421
Bsp143I GATC 8 cut(s) 638, 670, 756, 808, 859, 909, 993, 1051
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 7 cut(s) 11, 27, 103, 139, 158, 214, 350
BspANI GGCC 2 cut(s) 941, 1035
BspCNI CTCAG 2 cut(s) 262, 751
BspDI ATCGAT 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 965
BspMI ACCTGC 1 cut(s) 133
BspOI GCTAGC 1 cut(s) 26
BspPI GGATC 2 cut(s) 646, 803
BsrBI CCGCTC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 345
BsrGI TGTACA 1 cut(s) 421
BsrI ACTGG 2 cut(s) 222, 830
BssECI CCNNGG 3 cut(s) 45, 231, 1000
BssMI GATC 8 cut(s) 638, 670, 756, 808, 859, 909, 993, 1051
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 179, 567
BstACI GRCGYC 1 cut(s) 50
BstAUI TGTACA 1 cut(s) 421
BstBAI YACGTR 1 cut(s) 509
BstC8I GCNNGC 2 cut(s) 24, 595
BstDEI CTNAG 3 cut(s) 270, 311, 738
BstDSI CCRYGG 3 cut(s) 45, 231, 1000
BstEII GGTNACC 1 cut(s) 238
BstF5I GGATG 1 cut(s) 535
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 2 cut(s) 460, 543
BstKTI GATC 8 cut(s) 641, 673, 759, 811, 862, 912, 996, 1054
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 8 cut(s) 638, 670, 756, 808, 859, 909, 993, 1051
BstMWI GCNNNNNNNGC 2 cut(s) 19, 749
BstPI GGTNACC 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 619
BstV1I GCAGC 8 cut(s) 452, 525, 613, 751, 761, 781, 890, 1096
BstX2I RGATCY 4 cut(s) 670, 808, 859, 909
BstYI RGATCY 4 cut(s) 670, 808, 859, 909
Bsu15I ATCGAT 1 cut(s) 381
BsuI GTATCC 1 cut(s) 285
BsuRI GGCC 2 cut(s) 941, 1035
BsuTUI ATCGAT 1 cut(s) 381
BtgI CCRYGG 3 cut(s) 45, 231, 1000
BtsCI GGATG 1 cut(s) 535
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 1 cut(s) 759
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 24, 595
CfoI GCGC 2 cut(s) 460, 543
Cfr13I GGNCC 1 cut(s) 940
ClaI ATCGAT 1 cut(s) 381
CseI GACGC 1 cut(s) 39
Csp6I GTAC 3 cut(s) 39, 422, 784
CviAII CATG 5 cut(s) 232, 454, 503, 1031, 1049
CviQI GTAC 3 cut(s) 39, 422, 784
DdeI CTNAG 3 cut(s) 270, 311, 738
DpnI GATC 8 cut(s) 640, 672, 758, 810, 861, 911, 995, 1053
DpnII GATC 8 cut(s) 638, 670, 756, 808, 859, 909, 993, 1051
EciI GGCGGA 2 cut(s) 118, 173
Eco130I CCWWGG 1 cut(s) 231
Eco32I GATATC 1 cut(s) 385
Eco72I CACGTG 1 cut(s) 509
Eco88I CYCGRG 1 cut(s) 68
Eco91I GGTNACC 1 cut(s) 238
EcoO65I GGTNACC 1 cut(s) 238
EcoRV GATATC 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 513
FaeI CATG 5 cut(s) 235, 457, 506, 1034, 1052
FaqI GGGAC 1 cut(s) 713
FatI CATG 5 cut(s) 231, 453, 502, 1030, 1048
FauI CCCGC 1 cut(s) 343
FbaI TGATCA 3 cut(s) 756, 993, 1051
FokI GGATG 1 cut(s) 542
FspBI CTAG 2 cut(s) 23, 36
FspI TGCGCA 1 cut(s) 542
GlaI GCGC 2 cut(s) 459, 542
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 2 cut(s) 941, 1035
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 39
HhaI GCGC 2 cut(s) 460, 543
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 5 cut(s) 235, 457, 506, 1034, 1052
Hin6I GCGC 2 cut(s) 458, 541
HinP1I GCGC 2 cut(s) 458, 541
HinfI GANTC 2 cut(s) 250, 1077
HpaII CCGG 1 cut(s) 86
HphI GGTGA 7 cut(s) 100, 211, 232, 489, 555, 688, 988
Hpy166II GTNNAC 2 cut(s) 219, 1061
Hpy188I TCNGA 4 cut(s) 255, 864, 891, 1074
Hpy188III TCNNGA 1 cut(s) 854
Hpy8I GTNNAC 2 cut(s) 219, 1061
Hpy99I CGWCG 3 cut(s) 55, 122, 179
HpyAV CCTTC 4 cut(s) 90, 655, 888, 923
HpyCH4III ACNGT 2 cut(s) 179, 567
HpyCH4IV ACGT 2 cut(s) 508, 522
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 749
HpyF3I CTNAG 3 cut(s) 270, 311, 738
HpySE526I ACGT 2 cut(s) 508, 522
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 5 cut(s) 235, 457, 506, 1034, 1052
HspAI GCGC 2 cut(s) 458, 541
Ksp22I TGATCA 3 cut(s) 756, 993, 1051
Kzo9I GATC 8 cut(s) 638, 670, 756, 808, 859, 909, 993, 1051
LmnI GCTCC 4 cut(s) 4, 160, 448, 535
Lsp1109I GCAGC 8 cut(s) 452, 525, 613, 751, 761, 781, 890, 1096
LweI GCATC 2 cut(s) 403, 707
MaeI CTAG 2 cut(s) 23, 36
MaeII ACGT 2 cut(s) 508, 522
MaeIII GTNAC 5 cut(s) 88, 238, 561, 586, 676
MalI GATC 8 cut(s) 640, 672, 758, 810, 861, 911, 995, 1053
MbiI CCGCTC 1 cut(s) 13
MboI GATC 8 cut(s) 638, 670, 756, 808, 859, 909, 993, 1051
MboII GAAGA 6 cut(s) 301, 869, 916, 919, 971, 1054
MfeI CAATTG 1 cut(s) 417
MflI RGATCY 4 cut(s) 670, 808, 859, 909
MluCI AATT 5 cut(s) 321, 406, 417, 513, 582
MseI TTAA 3 cut(s) 183, 404, 1089
MslI CAYNNNNRTG 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 1 cut(s) 86
MunI CAATTG 1 cut(s) 417
MwoI GCNNNNNNNGC 2 cut(s) 19, 749
NcoI CCATGG 1 cut(s) 231
NdeII GATC 8 cut(s) 638, 670, 756, 808, 859, 909, 993, 1051
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 5 cut(s) 235, 457, 506, 1034, 1052
NlaIV GGNNCC 1 cut(s) 965
NmeAIII GCCGAG 1 cut(s) 673
NmuCI GTSAC 4 cut(s) 88, 238, 561, 676
NsbI TGCGCA 1 cut(s) 542
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 850
PfeI GAWTC 2 cut(s) 250, 1077
PmaCI CACGTG 1 cut(s) 509
PmlI CACGTG 1 cut(s) 509
Ppu21I YACGTR 1 cut(s) 509
PshBI ATTAAT 1 cut(s) 183
PspCI CACGTG 1 cut(s) 509
PspEI GGTNACC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 965
PspPI GGNCC 1 cut(s) 940
PsuI RGATCY 4 cut(s) 670, 808, 859, 909
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 3 cut(s) 40, 423, 785
RsaNI GTAC 3 cut(s) 39, 422, 784
RseI CAYNNNNRTG 1 cut(s) 507
SaqAI TTAA 3 cut(s) 183, 404, 1089
Sau3AI GATC 8 cut(s) 638, 670, 756, 808, 859, 909, 993, 1051
Sau96I GGNCC 1 cut(s) 940
ScaI AGTACT 1 cut(s) 40
SfaNI GCATC 2 cut(s) 403, 707
SfcI CTRYAG 1 cut(s) 619
SmiMI CAYNNNNRTG 1 cut(s) 507
SpeI ACTAGT 1 cut(s) 35
Sse9I AATT 5 cut(s) 321, 406, 417, 513, 582
SsiI CCGC 7 cut(s) 11, 27, 103, 139, 158, 214, 350
SspMI CTAG 2 cut(s) 23, 36
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 179, 567
TaiI ACGT 2 cut(s) 511, 525
TaqI TCGA 6 cut(s) 117, 381, 399, 474, 688, 1080
TasI AATT 5 cut(s) 321, 406, 417, 513, 582
TatI WGTACW 3 cut(s) 38, 421, 783
TauI GCSGC 2 cut(s) 29, 142
TfiI GAWTC 2 cut(s) 250, 1077
Tru1I TTAA 3 cut(s) 183, 404, 1089
Tru9I TTAA 3 cut(s) 183, 404, 1089
TscAI CASTG 1 cut(s) 759
TseFI GTSAC 4 cut(s) 88, 238, 561, 676
TseI GCWGC 8 cut(s) 440, 538, 626, 749, 764, 794, 878, 1084
Tsp45I GTSAC 4 cut(s) 88, 238, 561, 676
TspDTI ATGAA 4 cut(s) 279, 495, 565, 917
TspGWI ACGGA 2 cut(s) 135, 570
TspRI CASTG 1 cut(s) 759
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 1 cut(s) 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XspI CTAG 2 cut(s) 23, 36
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.