Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0011430

Physical Location & Seq

Genomic Coordinates Forward (+)

52007667 .. 52010696

Gene Structure 3030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1220600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAGCTTCCGTGCATATCGTTCACCGTTCCTAATCCTCCGACGGTGTCGTTTTGCGGCAAACTCGGCCTCTGCGATTTCCCGGTGGCGAGAAAGCGGAGGACGGCTTCGTTGGACGGAGCTTCTAGGGTTTCGGTTCGGGCGGTGAGGGGGTCGACGGAGCAACGAGGCAGTGAAGGCATTGACGGCAGAGATGGAGAGAGTCGTGGGGGAGGCGGGTTCACGAGCCCTGCCATGGAGGTCACCACGTTCAATTCGAACTTCGGCGAAGCTGAGTTTCCCGTGTGGGAAAAGATTGGGGCTGTTGTTAGACTTAGCTATGGAATAGGTATATATGGAGCAATGGCTGTATTAGGAAGATTTATATGTTCCGTGACGGGGATTGATAGCATGGGAGGTTTCCAAGTGTCTTTAGATGCAATTGTACAAGGGCTTGGATATGCAGCTCCTCCAATTATGGCCCTTCTTTTCATACTAGATGATGAAGTTGTGAAGGTATCTCCTCATGCTCGTGCTATTCGAGATGTAGAGGATGAAGAGCTTCGAAGCTTCTTTTATGGAATGTCACCTTTGCAGTTTATACTAATTGTTGCTGCAAGCTCTGTGGGTGAGGAGCTTTTCTACAGGGCTGCTGTTCAGGGATCATTGGCCGATATATTTCTAAGGGGCACAGATCTGATGACAGATGCTCGAGGAGTGGCGTCTCTGACTGGAGTTCTGCCCCCATTTGTCCCTTTTGCTCAGGCATTTGCAGCGGTGATTACGGCTGCGCTCACAGGTTCTCTGTACTATGTGGCAGCTTCTCCAAAAGATCCTGCTTATGTAGTTGCACCAGTTTTACAATCTCGCTCTGGTCGTGAAGACATGAAAAAGCTTTTTGCAGCTTGGTATCAGAGGAGACAAATGAAGAAGATTTACTCTCCCCTGCTTGAAGGACTTCTTGCCCTATATCTTGGTTTTGAGTGGATCCAGACGAACAATATGCTTACGCCTATGATCACGCACGGCATATACTCTGCTGTGATATTGGGTCATGGCCTTTGGAAGATACACGATCATCGGAAAAGACTACGCCAGAGGATCCAGCAGCTTAAAGTAGAAGGAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

371

Amino Acids

40.31

Weight (kDa)

8.95

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35260
fragaria_vesca	FvH4_5g21880
malus_domestica	MD00G1220600.v1.1 MD06G1033000.v1.1
prunus_persica	Prupe.5G038500_v2.0.a1
pyrus_communis	pycom06g02730
rosa_chinensis	RchiOBHm_Chr6g0284251 RchiOBHm_Chr7g0209431
rosa_laevigata	RLG00000003137
rosa_multiflora	Rmu_sc0001861.1_g000004 Rmu_sc0007059.1_g000001 Rmu_sc0015095.1_g000003
rosa_roxburghii	Rroxscaffold_3G00249470 Rroxscaffold_3G00250390
rosa_rugosa	Rorug07G0112500
rosa_samantha	Rh7AG246700 Rh7BG241700 Rh7CG262300 Rh7DG252900
rosa_wichuraiana	Rw7G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	155
AciI	CCGC	5 cut(s)	57, 97, 143, 216, 755
AclWI	GGATC	6 cut(s)	649, 806, 961, 974, 1075, 1088
AcoI	YGGCCR	1 cut(s)	648
AcyI	GRCGYC	1 cut(s)	701
AfaI	GTAC	2 cut(s)	426, 788
AfiI	CCNNNNNNNGG	2 cut(s)	235, 378
AgsI	TTSAA	2 cut(s)	253, 932
Alw26I	GTCTC	2 cut(s)	708, 892
AlwI	GGATC	6 cut(s)	649, 806, 961, 974, 1075, 1088
Ama87I	CYCGRG	1 cut(s)	690
AoxI	GGCC	4 cut(s)	67, 459, 648, 1036
ApeKI	GCWGC	8 cut(s)	443, 593, 629, 752, 767, 797, 881, 1087
Asp700I	GAANNNNTTC	2 cut(s)	540, 936
AspLEI	GCGC	1 cut(s)	772
AspS9I	GGNCC	1 cut(s)	460
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	6 cut(s)	16, 157, 235, 558, 620, 769
AsuII	TTCGAA	2 cut(s)	257, 544
AvaI	CYCGRG	1 cut(s)	690
BaeGI	GKGCMC	1 cut(s)	671
BamHI	GGATCC	2 cut(s)	966, 1080
BanII	GRGCYC	1 cut(s)	230
BarI	GAAGNNNNNNTAC	2 cut(s)	899, 931
BauI	CACGAG	2 cut(s)	223, 510
BbsI	GAAGAC	1 cut(s)	867
BbvI	GCAGC	8 cut(s)	455, 580, 616, 754, 764, 809, 893, 1099
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	4 cut(s)	120, 202, 780, 1021
BcgI	CGANNNNNNTGC	2 cut(s)	964, 998
BclI	TGATCA	1 cut(s)	996
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	708, 892
BfaI	CTAG	2 cut(s)	126, 476
BfmI	CTRYAG	1 cut(s)	622
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	9 cut(s)	58, 444, 594, 630, 753, 768, 798, 882, 1088
BlsI	GCNGC	9 cut(s)	59, 445, 595, 631, 754, 769, 799, 883, 1089
Bme1390I	CCNGG	1 cut(s)	83
BmeT110I	CYCGRG	1 cut(s)	690
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	2 cut(s)	968, 1082
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	406, 676
BpiI	GAAGAC	1 cut(s)	867
BpmI	CTGGAG	1 cut(s)	732
Bpu10I	CCTNAGC	1 cut(s)	741
Bpu14I	TTCGAA	2 cut(s)	257, 544
BpuMI	CCSGG	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	701
BsaJI	CCNNGG	1 cut(s)	234
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 378
Bse1I	ACTGG	2 cut(s)	715, 833
Bse3DI	GCAATG	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	2 cut(s)	235, 378
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	2 cut(s)	264, 755
BseNI	ACTGG	2 cut(s)	715, 833
BseRI	GAGGAG	5 cut(s)	438, 492, 626, 708, 910
BseSI	GKGCMC	1 cut(s)	671
BseXI	GCAGC	8 cut(s)	455, 580, 616, 754, 764, 809, 893, 1099
BshFI	GGCC	4 cut(s)	69, 461, 650, 1038
BsiHKCI	CYCGRG	1 cut(s)	690
BsiSI	CCGG	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	716
BslI	CCNNNNNNNGG	2 cut(s)	235, 378
BsmAI	GTCTC	2 cut(s)	708, 892
BsmBI	CGTCTC	1 cut(s)	708
BsmFI	GGGAC	1 cut(s)	716
BsnI	GGCC	4 cut(s)	69, 461, 650, 1038
BsoBI	CYCGRG	1 cut(s)	690
Bsp119I	TTCGAA	2 cut(s)	257, 544
Bsp1286I	GDGCHC	2 cut(s)	230, 671
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	7 cut(s)	641, 673, 811, 966, 996, 1054, 1080
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	5 cut(s)	57, 97, 143, 216, 755
BspANI	GGCC	4 cut(s)	69, 461, 650, 1038
BspCNI	CTCAG	2 cut(s)	265, 754
BspLI	GGNNCC	2 cut(s)	968, 1082
BspPI	GGATC	6 cut(s)	649, 806, 961, 974, 1075, 1088
BspQI	GCTCTTC	1 cut(s)	531
BspT104I	TTCGAA	2 cut(s)	257, 544
BsrDI	GCAATG	1 cut(s)	348
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	715, 833
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	7 cut(s)	641, 673, 811, 966, 996, 1054, 1080
BssNI	GRCGYC	1 cut(s)	701
BssSI	CACGAG	2 cut(s)	223, 510
BssT1I	CCWWGG	1 cut(s)	234
Bst2BI	CACGAG	2 cut(s)	223, 510
Bst4CI	ACNGT	2 cut(s)	28, 46
Bst6I	CTCTTC	1 cut(s)	531
BstACI	GRCGYC	1 cut(s)	701
BstAUI	TGTACA	1 cut(s)	424
BstBI	TTCGAA	2 cut(s)	257, 544
BstC8I	GCNNGC	1 cut(s)	598
BstDEI	CTNAG	4 cut(s)	273, 314, 662, 741
BstDSI	CCRYGG	1 cut(s)	234
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	538
BstHHI	GCGC	1 cut(s)	772
BstKTI	GATC	7 cut(s)	644, 676, 814, 969, 999, 1057, 1083
BstMAI	GTCTC	2 cut(s)	708, 892
BstMBI	GATC	7 cut(s)	641, 673, 811, 966, 996, 1054, 1080
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 177, 186, 752
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	622
BstSLI	GKGCMC	1 cut(s)	671
BstV1I	GCAGC	8 cut(s)	455, 580, 616, 754, 764, 809, 893, 1099
BstV2I	GAAGAC	1 cut(s)	867
BstX2I	RGATCY	4 cut(s)	673, 811, 966, 1080
BstYI	RGATCY	4 cut(s)	673, 811, 966, 1080
BsuRI	GGCC	4 cut(s)	69, 461, 650, 1038
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	598
CfoI	GCGC	1 cut(s)	772
Cfr13I	GGNCC	1 cut(s)	460
CseI	GACGC	1 cut(s)	690
Csp6I	GTAC	2 cut(s)	425, 787
CspCI	CAANNNNNGTGG	2 cut(s)	585, 620
CviAII	CATG	5 cut(s)	235, 391, 506, 865, 1034
CviQI	GTAC	2 cut(s)	425, 787
DdeI	CTNAG	4 cut(s)	273, 314, 662, 741
DpnI	GATC	7 cut(s)	643, 675, 813, 968, 998, 1056, 1082
DpnII	GATC	7 cut(s)	641, 673, 811, 966, 996, 1054, 1080
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	690
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	708
FaeI	CATG	5 cut(s)	238, 394, 509, 868, 1037
FalI	AAGNNNNNCTT	2 cut(s)	924, 956
FaqI	GGGAC	1 cut(s)	716
FatI	CATG	5 cut(s)	234, 390, 505, 864, 1033
FauI	CCCGC	1 cut(s)	209
FbaI	TGATCA	1 cut(s)	996
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	9 cut(s)	58, 444, 594, 630, 753, 768, 798, 882, 1088
FokI	GGATG	1 cut(s)	545
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	9 cut(s)	58, 444, 594, 630, 753, 768, 798, 882, 1088
FspBI	CTAG	2 cut(s)	126, 476
GlaI	GCGC	1 cut(s)	771
GluI	GCNGC	9 cut(s)	58, 444, 594, 630, 753, 768, 798, 882, 1088
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	4 cut(s)	69, 461, 650, 1038
HapII	CCGG	1 cut(s)	83
HgaI	GACGC	1 cut(s)	690
HhaI	GCGC	1 cut(s)	772
Hin1I	GRCGYC	1 cut(s)	701
Hin1II	CATG	5 cut(s)	238, 394, 509, 868, 1037
Hin6I	GCGC	1 cut(s)	770
HinP1I	GCGC	1 cut(s)	770
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HindIII	AAGCTT	2 cut(s)	547, 872
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	6 cut(s)	16, 157, 235, 558, 620, 769
Hpy166II	GTNNAC	3 cut(s)	24, 156, 222
Hpy188I	TCNGA	5 cut(s)	42, 678, 708, 894, 1062
Hpy188III	TCNNGA	4 cut(s)	223, 521, 857, 970
Hpy8I	GTNNAC	3 cut(s)	24, 156, 222
Hpy99I	CGWCG	2 cut(s)	46, 160
HpyAV	CCTTC	5 cut(s)	170, 473, 487, 926, 1094
HpyCH4III	ACNGT	2 cut(s)	28, 46
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	8 cut(s)	15, 419, 443, 574, 596, 752, 830, 881
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 177, 186, 752
HpyF3I	CTNAG	4 cut(s)	273, 314, 662, 741
HpySE526I	ACGT	1 cut(s)	248
Hsp92I	GRCGYC	1 cut(s)	701
Hsp92II	CATG	5 cut(s)	238, 394, 509, 868, 1037
HspAI	GCGC	1 cut(s)	770
Ksp22I	TGATCA	1 cut(s)	996
Kzo9I	GATC	7 cut(s)	641, 673, 811, 966, 996, 1054, 1080
LguI	GCTCTTC	1 cut(s)	531
LmnI	GCTCC	6 cut(s)	4, 119, 160, 338, 451, 613
Lsp1109I	GCAGC	8 cut(s)	455, 580, 616, 754, 764, 809, 893, 1099
LweI	GCATC	2 cut(s)	406, 676
MaeI	CTAG	2 cut(s)	126, 476
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	3 cut(s)	241, 373, 564
MalI	GATC	7 cut(s)	643, 675, 813, 968, 998, 1056, 1082
MboI	GATC	7 cut(s)	641, 673, 811, 966, 996, 1054, 1080
MboII	GAAGA	6 cut(s)	369, 548, 872, 919, 922, 1057
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	4 cut(s)	673, 811, 966, 1080
MhlI	GDGCHC	2 cut(s)	230, 671
MluCI	AATT	4 cut(s)	253, 420, 453, 585
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	2 cut(s)	65, 93
MroXI	GAANNNNTTC	2 cut(s)	540, 936
MseI	TTAA	1 cut(s)	1092
MslI	CAYNNNNRTG	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	755
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	420
MwoI	GCNNNNNNNGC	4 cut(s)	66, 177, 186, 752
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	7 cut(s)	641, 673, 811, 966, 996, 1054, 1080
NlaIII	CATG	5 cut(s)	238, 394, 509, 868, 1037
NlaIV	GGNNCC	2 cut(s)	968, 1082
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	3 cut(s)	241, 373, 564
NspV	TTCGAA	2 cut(s)	257, 544
PaeR7I	CTCGAG	1 cut(s)	690
PciSI	GCTCTTC	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	4 cut(s)	72, 254, 517, 853
PdmI	GAANNNNTTC	2 cut(s)	540, 936
PflFI	GACNNNGTC	1 cut(s)	46
PkrI	GCNGC	9 cut(s)	59, 445, 595, 631, 754, 769, 799, 883, 1089
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PspEI	GGTNACC	1 cut(s)	241
PspN4I	GGNNCC	2 cut(s)	968, 1082
PspPI	GGNCC	1 cut(s)	460
PspXI	VCTCGAGB	1 cut(s)	690
PsuI	RGATCY	4 cut(s)	673, 811, 966, 1080
PsyI	GACNNNGTC	1 cut(s)	46
RsaI	GTAC	2 cut(s)	426, 788
RsaNI	GTAC	2 cut(s)	425, 787
RseI	CAYNNNNRTG	1 cut(s)	510
SalI	GTCGAC	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	531
SaqAI	TTAA	1 cut(s)	1092
SatI	GCNGC	9 cut(s)	58, 444, 594, 630, 753, 768, 798, 882, 1088
Sau3AI	GATC	7 cut(s)	641, 673, 811, 966, 996, 1054, 1080
Sau96I	GGNCC	1 cut(s)	460
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	2 cut(s)	230, 671
SfaNI	GCATC	2 cut(s)	406, 676
SfcI	CTRYAG	1 cut(s)	622
Sfr274I	CTCGAG	1 cut(s)	690
SfuI	TTCGAA	2 cut(s)	257, 544
SlaI	CTCGAG	1 cut(s)	690
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	690
SmoI	CTYRAG	1 cut(s)	690
Sse9I	AATT	4 cut(s)	253, 420, 453, 585
SsiI	CCGC	5 cut(s)	57, 97, 143, 216, 755
SspMI	CTAG	2 cut(s)	126, 476
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	28, 46
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	5 cut(s)	155, 257, 520, 544, 691
TasI	AATT	4 cut(s)	253, 420, 453, 585
TatI	WGTACW	2 cut(s)	424, 786
TauI	GCSGC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	1092
Tru9I	TTAA	1 cut(s)	1092
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	3 cut(s)	241, 373, 564
TseI	GCWGC	8 cut(s)	443, 593, 629, 752, 767, 797, 881, 1087
Tsp45I	GTSAC	3 cut(s)	241, 373, 564
TspDTI	ATGAA	5 cut(s)	460, 498, 549, 881, 920
TspGWI	ACGGA	3 cut(s)	132, 173, 361
TspRI	CASTG	1 cut(s)	178
Tth111I	GACNNNGTC	1 cut(s)	46
XhoI	CTCGAG	1 cut(s)	690
XmiI	GTMKAC	1 cut(s)	155
XmnI	GAANNNNTTC	2 cut(s)	540, 936
XspI	CTAG	2 cut(s)	126, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.