Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011430

Physical Location & Seq

Genomic Coordinates Forward (+)

26831610 .. 26835000

Gene Structure 3391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18745

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAGCTTCCGCTTATATCGCTAGCCGCTACTACTAGTACTTCCACGGCGTCGTTTGGCAGTAAGCTCGGGCTGTGCGATTTTCCGGTGACGAGAAAGAGGCGGACGGGTTTGTTCGACGGAGGTAGGGTTTCTGTGCGGCAGGTTAGGGCTTCGGCGGAGCAGAGGAGTAGCGACGGTATTAATGGAAGTGAGGCGGAGAGTGGAGGACGGCGGTTCACCAGTCCTGCCATGGAGGTCACCACATTGAATCCGAGCTTCAATGAAGCTGAGTATCCTGTTTGGGAGAAGATTGGTGCTGTTGTTAGACTTAGTTATGGAATTGGTATATATGGTGCAATGGCTTTAGCGGGTAGATTTATATGCTCAATGATGGGTATCGATATCGTGGGAGGTTTCGAGTTAAATTTAGATGCAACTGTACAAGGGCTTGGATATGCAGCTCCACCAATCATGGCGCTTCTTTTTATACTCGATGATGAAGTTGTAAAGTTTTCACCTCATGCACGTGCAATTAGAGACGTAGAGGATGAGGAGCTGCGCAGTTTCTTTTATGGAATGTCACCGTTGCAGTTCATACTAATTGTTACTGCAAGCTCTTTGGGAGAGGAACTTTTCTACAGGGCTGCTGTTCAGGGATCATTAGCCGAGATATTTTTGAAGGGAACAGATCTGGTGACAGACATTCGAGGAATGGCATCTCTGTCTGGGGTTCTACCCCCATTTGTCCCATTTGCTCAGGCATTTGCAGCAGTGATCACAGCTACTCTTACAGGTTCTTTGTACTATGTGGCTGCCTCTCCAAAAGATCCTGCTTATGTAGTTGCACCAGTTTTACAATCTCGCTCTGGTCGTGAAGATCTGAAAAAGCTGTTTGCAGCTTGGTATCAGAGAAGGCAAATGAAGAAGATCTACTCTCCCCTTCTTGAAGGACTTTTGGCCCTCTATCTCGGTTTTGAGTGGAACCAGACGAATAATCTTCTTGCACCTATGATCACCCACGGCATATATTCAGCTGTGATATTGGGTCATGGCCTTCGGAAGATACATGATCATCGTAGACGACTACATCAGAGAATCGAGCAGCTTAAAGAAGAAAGTAGAGTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

370

Amino Acids

40.61

Weight (kDa)

7.77

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35260
fragaria_vesca	FvH4_5g21880
malus_domestica	MD00G1220600.v1.1 MD06G1033000.v1.1
prunus_persica	Prupe.5G038500_v2.0.a1
pyrus_communis	pycom06g02730
rosa_chinensis	RchiOBHm_Chr6g0284251 RchiOBHm_Chr7g0209431
rosa_laevigata	RLG00000003137
rosa_multiflora	Rmu_sc0001861.1_g000004 Rmu_sc0007059.1_g000001 Rmu_sc0015095.1_g000003
rosa_roxburghii	Rroxscaffold_3G00249470 Rroxscaffold_3G00250390
rosa_rugosa	Rorug07G0112500
rosa_samantha	Rh7AG246700 Rh7BG241700 Rh7CG262300 Rh7DG252900
rosa_wichuraiana	Rw7G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	542
Acc36I	ACCTGC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	1060
AciI	CCGC	8 cut(s)	11, 27, 103, 139, 158, 197, 214, 350
AclWI	GGATC	2 cut(s)	646, 803
AcsI	RAATTY	1 cut(s)	406
AcvI	CACGTG	1 cut(s)	509
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	3 cut(s)	40, 423, 785
AgsI	TTSAA	4 cut(s)	250, 262, 661, 929
AhlI	ACTAGT	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	513
AlwI	GGATC	2 cut(s)	646, 803
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	2 cut(s)	939, 1033
ApeKI	GCWGC	7 cut(s)	440, 538, 626, 749, 794, 878, 1084
ApoI	RAATTY	1 cut(s)	406
AseI	ATTAAT	1 cut(s)	183
AspLEI	GCGC	2 cut(s)	460, 543
AspS9I	GGNCC	1 cut(s)	940
AsuHPI	GGTGA	7 cut(s)	100, 211, 232, 489, 555, 688, 988
AsuNHI	GCTAGC	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	896, 928
BbrPI	CACGTG	1 cut(s)	509
BbvI	GCAGC	7 cut(s)	452, 525, 613, 761, 781, 890, 1096
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	3 cut(s)	63, 227, 1018
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciVI	GTATCC	1 cut(s)	285
BclI	TGATCA	3 cut(s)	756, 993, 1051
BcoDI	GTCTC	1 cut(s)	513
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	2 cut(s)	23, 36
BfmI	CTRYAG	1 cut(s)	619
BfoI	RGCGCY	1 cut(s)	461
BfuAI	ACCTGC	1 cut(s)	133
BfuI	GTATCC	1 cut(s)	285
BglII	AGATCT	3 cut(s)	670, 859, 909
BisI	GCNGC	9 cut(s)	27, 140, 441, 539, 627, 750, 795, 879, 1085
BlsI	GCNGC	9 cut(s)	28, 141, 442, 540, 628, 751, 796, 880, 1086
BmcAI	AGTACT	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	940
BmiI	GGNNCC	1 cut(s)	965
BmsI	GCATC	2 cut(s)	403, 707
BmtI	GCTAGC	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	738
Bsa29I	ATCGAT	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	45, 231, 1000
BsaWI	WCCGGW	1 cut(s)	85
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bse1I	ACTGG	2 cut(s)	222, 830
Bse3DI	GCAATG	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	377
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	3 cut(s)	45, 231, 1000
BseGI	GGATG	1 cut(s)	535
BseJI	GATNNNNATC	1 cut(s)	377
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	261, 752
BseNI	ACTGG	2 cut(s)	222, 830
BseRI	GAGGAG	2 cut(s)	181, 548
BseXI	GCAGC	7 cut(s)	452, 525, 613, 761, 781, 890, 1096
BshFI	GGCC	2 cut(s)	941, 1035
BshVI	ATCGAT	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	713
BsmAI	GTCTC	1 cut(s)	513
BsmBI	CGTCTC	1 cut(s)	513
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	2 cut(s)	941, 1035
BsoBI	CYCGRG	1 cut(s)	68
Bsp1407I	TGTACA	1 cut(s)	421
Bsp143I	GATC	8 cut(s)	638, 670, 756, 808, 859, 909, 993, 1051
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	8 cut(s)	11, 27, 103, 139, 158, 197, 214, 350
BspANI	GGCC	2 cut(s)	941, 1035
BspCNI	CTCAG	2 cut(s)	262, 751
BspDI	ATCGAT	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	965
BspMI	ACCTGC	1 cut(s)	133
BspOI	GCTAGC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	646, 803
BsrDI	GCAATG	1 cut(s)	345
BsrGI	TGTACA	1 cut(s)	421
BsrI	ACTGG	2 cut(s)	222, 830
BssECI	CCNNGG	3 cut(s)	45, 231, 1000
BssMI	GATC	8 cut(s)	638, 670, 756, 808, 859, 909, 993, 1051
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	231
Bst4CI	ACNGT	3 cut(s)	179, 421, 567
BstACI	GRCGYC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	421
BstBAI	YACGTR	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	24, 595
BstDEI	CTNAG	3 cut(s)	270, 311, 738
BstDSI	CCRYGG	3 cut(s)	45, 231, 1000
BstEII	GGTNACC	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	535
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	2 cut(s)	460, 543
BstKTI	GATC	8 cut(s)	641, 673, 759, 811, 862, 912, 996, 1054
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	8 cut(s)	638, 670, 756, 808, 859, 909, 993, 1051
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 749
BstPI	GGTNACC	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	619
BstV1I	GCAGC	7 cut(s)	452, 525, 613, 761, 781, 890, 1096
BstX2I	RGATCY	4 cut(s)	670, 808, 859, 909
BstYI	RGATCY	4 cut(s)	670, 808, 859, 909
Bsu15I	ATCGAT	1 cut(s)	381
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	941, 1035
BsuTUI	ATCGAT	1 cut(s)	381
BtgI	CCRYGG	3 cut(s)	45, 231, 1000
BtsCI	GGATG	1 cut(s)	535
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	1 cut(s)	759
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	2 cut(s)	24, 595
CfoI	GCGC	2 cut(s)	460, 543
Cfr13I	GGNCC	1 cut(s)	940
ClaI	ATCGAT	1 cut(s)	381
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	3 cut(s)	39, 422, 784
CviAII	CATG	5 cut(s)	232, 454, 503, 1031, 1049
CviQI	GTAC	3 cut(s)	39, 422, 784
DdeI	CTNAG	3 cut(s)	270, 311, 738
DpnI	GATC	8 cut(s)	640, 672, 758, 810, 861, 911, 995, 1053
DpnII	GATC	8 cut(s)	638, 670, 756, 808, 859, 909, 993, 1051
EciI	GGCGGA	3 cut(s)	118, 173, 212
Eco130I	CCWWGG	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	385
Eco72I	CACGTG	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	68
Eco91I	GGTNACC	1 cut(s)	238
EcoO65I	GGTNACC	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	513
FaeI	CATG	5 cut(s)	235, 457, 506, 1034, 1052
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	5 cut(s)	231, 453, 502, 1030, 1048
FauI	CCCGC	1 cut(s)	343
FbaI	TGATCA	3 cut(s)	756, 993, 1051
FblI	GTMKAC	1 cut(s)	1060
Fnu4HI	GCNGC	9 cut(s)	27, 140, 441, 539, 627, 750, 795, 879, 1085
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	9 cut(s)	27, 140, 441, 539, 627, 750, 795, 879, 1085
FspBI	CTAG	2 cut(s)	23, 36
FspI	TGCGCA	1 cut(s)	542
GlaI	GCGC	2 cut(s)	459, 542
GluI	GCNGC	9 cut(s)	27, 140, 441, 539, 627, 750, 795, 879, 1085
HaeII	RGCGCY	1 cut(s)	461
HaeIII	GGCC	2 cut(s)	941, 1035
HapII	CCGG	1 cut(s)	86
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	2 cut(s)	460, 543
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	5 cut(s)	235, 457, 506, 1034, 1052
Hin6I	GCGC	2 cut(s)	458, 541
HinP1I	GCGC	2 cut(s)	458, 541
HinfI	GANTC	2 cut(s)	250, 1077
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	7 cut(s)	100, 211, 232, 489, 555, 688, 988
Hpy166II	GTNNAC	2 cut(s)	219, 1061
Hpy188I	TCNGA	5 cut(s)	255, 864, 891, 1041, 1074
Hpy188III	TCNNGA	2 cut(s)	854, 926
Hpy8I	GTNNAC	2 cut(s)	219, 1061
Hpy99I	CGWCG	3 cut(s)	55, 122, 179
HpyAV	CCTTC	5 cut(s)	655, 888, 923, 932, 1046
HpyCH4III	ACNGT	3 cut(s)	179, 421, 567
HpyCH4IV	ACGT	2 cut(s)	508, 522
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 749
HpyF3I	CTNAG	3 cut(s)	270, 311, 738
HpySE526I	ACGT	2 cut(s)	508, 522
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	5 cut(s)	235, 457, 506, 1034, 1052
HspAI	GCGC	2 cut(s)	458, 541
Ksp22I	TGATCA	3 cut(s)	756, 993, 1051
Kzo9I	GATC	8 cut(s)	638, 670, 756, 808, 859, 909, 993, 1051
LmnI	GCTCC	4 cut(s)	4, 160, 448, 535
Lsp1109I	GCAGC	7 cut(s)	452, 525, 613, 761, 781, 890, 1096
LweI	GCATC	2 cut(s)	403, 707
MaeI	CTAG	2 cut(s)	23, 36
MaeII	ACGT	2 cut(s)	508, 522
MaeIII	GTNAC	5 cut(s)	88, 238, 561, 586, 676
MalI	GATC	8 cut(s)	640, 672, 758, 810, 861, 911, 995, 1053
MboI	GATC	8 cut(s)	638, 670, 756, 808, 859, 909, 993, 1051
MboII	GAAGA	7 cut(s)	301, 869, 916, 919, 971, 1054, 1106
MflI	RGATCY	4 cut(s)	670, 808, 859, 909
MluCI	AATT	4 cut(s)	321, 406, 513, 582
MseI	TTAA	3 cut(s)	183, 404, 1089
MslI	CAYNNNNRTG	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	1016
MspI	CCGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	19, 749
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	8 cut(s)	638, 670, 756, 808, 859, 909, 993, 1051
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	5 cut(s)	235, 457, 506, 1034, 1052
NlaIV	GGNNCC	1 cut(s)	965
NmeAIII	GCCGAG	1 cut(s)	673
NmuCI	GTSAC	4 cut(s)	88, 238, 561, 676
NsbI	TGCGCA	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 850
PfeI	GAWTC	2 cut(s)	250, 1077
PkrI	GCNGC	9 cut(s)	28, 141, 442, 540, 628, 751, 796, 880, 1086
PmaCI	CACGTG	1 cut(s)	509
PmlI	CACGTG	1 cut(s)	509
Ppu21I	YACGTR	1 cut(s)	509
PshBI	ATTAAT	1 cut(s)	183
PspCI	CACGTG	1 cut(s)	509
PspEI	GGTNACC	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	965
PspPI	GGNCC	1 cut(s)	940
PsuI	RGATCY	4 cut(s)	670, 808, 859, 909
PvuII	CAGCTG	1 cut(s)	1016
RsaI	GTAC	3 cut(s)	40, 423, 785
RsaNI	GTAC	3 cut(s)	39, 422, 784
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	183, 404, 1089
SatI	GCNGC	9 cut(s)	27, 140, 441, 539, 627, 750, 795, 879, 1085
Sau3AI	GATC	8 cut(s)	638, 670, 756, 808, 859, 909, 993, 1051
Sau96I	GGNCC	1 cut(s)	940
ScaI	AGTACT	1 cut(s)	40
SfaNI	GCATC	2 cut(s)	403, 707
SfcI	CTRYAG	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	507
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	4 cut(s)	321, 406, 513, 582
SsiI	CCGC	8 cut(s)	11, 27, 103, 139, 158, 197, 214, 350
SspMI	CTAG	2 cut(s)	23, 36
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	3 cut(s)	179, 421, 567
TaiI	ACGT	2 cut(s)	511, 525
TaqI	TCGA	6 cut(s)	117, 381, 399, 474, 688, 1080
TasI	AATT	4 cut(s)	321, 406, 513, 582
TatI	WGTACW	3 cut(s)	38, 421, 783
TauI	GCSGC	2 cut(s)	29, 142
TfiI	GAWTC	2 cut(s)	250, 1077
Tru1I	TTAA	3 cut(s)	183, 404, 1089
Tru9I	TTAA	3 cut(s)	183, 404, 1089
TscAI	CASTG	1 cut(s)	759
TseFI	GTSAC	4 cut(s)	88, 238, 561, 676
TseI	GCWGC	7 cut(s)	440, 538, 626, 749, 794, 878, 1084
Tsp45I	GTSAC	4 cut(s)	88, 238, 561, 676
TspDTI	ATGAA	4 cut(s)	279, 495, 565, 917
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	759
VspI	ATTAAT	1 cut(s)	183
XapI	RAATTY	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	1060
XspI	CTAG	2 cut(s)	23, 36
ZrmI	AGTACT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.