Rorug07G0112500

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011430
Physical Location & Seq
Reverse (-)
8796015 .. 8799679
3665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0112500.1

Sequence Viewer

Length: 1545 bp
ATGGAGCTCTCTGAATCGTCCTCCTCCTCCTCCTGTGTCTCCCCAAATCTGGATTTGCATATCGGCAACAGCAACGAAATCGATCAGGTTCAGCTCAACCATTCCGACATAGGGTCTCAACAGTCCACCACCACCGCCGCCTACCAGCAGCTGGACAATCACTCCGACTCCGGTGGTGACGCGGCGGTGGTTAGTCATTCCGGTCCCGATCCCGATGTTGCTGCTGATGTCGTGGATCACGCTGTCGTCGTTGATGAGATTGAGAGATTGGATTTGAGAGGAGACGACGACGCTGATGTAGATGTAGCGGTGGAGGTAGAGGTAGAGGAGAAGAAAGAGGAAGGAGGAGAGGTTGAGGCGGAGGAGAAGAGTTCTAATGGTGGTGGTGGTGGAGAAATCGAAAACGGAAATGAAAGTGAGAGACAGAGCGAGGAAGAAGAGAGCAATGAAGGAGAAAACAGGAGTGAGAATGGAGACAAGAAGGGGGGAGAATATAACAGAAGGTATCAGTATCCAGTGAGGCCTGAAGCTGAAGACTGTTCCTTTTACCTCAAGACTGGGAATTGCAAGTTTGGATCCAACTGCAAGTTTAATCACCCTCATTTCCAGGGTTTTAAAGACAAGGTGAAGGAAAAGGACGAGTTTTCAGAGAAGCCAAGCCAGACAGAATGCAAGTATTACTTAAGGCCAGGGGGATGTAAGTATGGGAAAGCTTGCAGATACAACCATGGAAAAGGGAAACCTTTGGTTGCTCCAGTTGTGGAACTTAACTTTCTGGGACTGCCAATTCGACAGGGGGAGAGAGAGTGTCCCTACTATATGCGAAATGGCTCCTGCAAGTATGGATCAAACTGCAGGTTTAATCACCCTGATCCTACTGCTGCAGGAGGATCTGACCCTCCGTCTGGATTTGATAATGGTGGACCTGCATCATTACAAGGTGGATCGCAATTATCATCTTGGTCTGCACCAAGATCATTAAATGAGACTCCGCTTTATATGCCAATGATGATGCCACCATCTCAAGGGGTTCCTTCCCAAAATACAGAATGGAATGGCTATCAGGCACCAGTTTATCTAGAAAGAAGCATGCCTGCACCTCCACCATATGTTATCAACAACTCAGGGACCGAAACCAATGTTTATAAACAATATCCACCGTCAAATCAAGTTGATGAATTCCCAGAACGACCTGGACAACCTTTGTGCAGTTTCTTTTTAAGAACAGGGGACTGTAAGTTTAGATCTAACTGCAAATATCATCATCCAAAAAGTCAGACTGCAGTATCCCCCTCATTTGCACTGAGCGACAAGGGCCTGCCTTTGAGACCAGATCAGAATATTTGCACCCATTACAGTCGCTATGGCATTTGCAAATTTGGGCCAGCTTGTAAATTTGATCATCCGTTACATTTAACATCTTCAACTACATCTGGTCTTGATCATCAACTTCCTTTCAGTGACTTAGCGAATACAAAAGAGGCGGGAATAGCTAGGAGCAGAAGTGGAACTGATGATACAATTCAGCTGCAACAAGCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

514

Amino Acids

56.33

Weight (kDa)

4.98

Isoelectric Point (pI)

59.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 178 - 200 1.9e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 221 - 245 7.6e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 266 - 290 2.4e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4 PF18345 270 - 289 8.4e-06 Zinc finger domain
zf-CCCH_4 PF18044 270 - 290 3.4e-07 CCCH-type zinc finger
zf-CCCH PF00642 398 - 424 7.2e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH PF00642 445 - 469 1.2e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1146
Acc36I ACCTGC 2 cut(s) 846, 934
AccB1I GGYRCC 1 cut(s) 1066
AccB7I CCANNNNNTGG 1 cut(s) 151
AccII CGCG 1 cut(s) 182
AciI CCGC 8 cut(s) 135, 138, 182, 185, 308, 359, 992, 1484
AclWI GGATC 8 cut(s) 203, 243, 570, 583, 853, 866, 898, 952
AcsI RAATTY 3 cut(s) 1178, 1376, 1394
AcuI CTGAAG 2 cut(s) 546, 552
AfiI CCNNNNNNNGG 5 cut(s) 49, 111, 151, 905, 1025
AflII CTTAAG 1 cut(s) 682
AgsI TTSAA 1 cut(s) 1425
AhdI GACNNNNNGTC 2 cut(s) 112, 901
AjnI CCWGG 3 cut(s) 606, 688, 1192
AluBI AGCT 9 cut(s) 7, 94, 151, 530, 713, 1388, 1493, 1528, 1538
AluI AGCT 9 cut(s) 7, 94, 151, 530, 713, 1388, 1493, 1528, 1538
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 7 cut(s) 43, 120, 276, 415, 468, 980, 1321
AlwI GGATC 8 cut(s) 203, 243, 570, 583, 853, 866, 898, 952
AlwNI CAGNNNCTG 1 cut(s) 151
AoxI GGCC 4 cut(s) 521, 686, 1315, 1382
ApeKI GCWGC 4 cut(s) 148, 221, 881, 1528
ApoI RAATTY 3 cut(s) 1178, 1376, 1394
ArsI GACNNNNNNTTYG 2 cut(s) 771, 803
AspS9I GGNCC 5 cut(s) 203, 923, 1128, 1315, 1382
AsuHPI GGTGA 4 cut(s) 188, 587, 637, 857
AvaII GGWCC 3 cut(s) 203, 923, 1128
BaeI ACNNNNGTAYC 2 cut(s) 1269, 1302
BamHI GGATCC 1 cut(s) 575
BanI GGYRCC 1 cut(s) 1066
BanII GRGCYC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 4 cut(s) 160, 208, 868, 1515
BccI CCATC 1 cut(s) 1027
BcgI CGANNNNNNTGC 4 cut(s) 61, 95, 203, 237
BciT130I CCWGG 3 cut(s) 608, 690, 1194
BciVI GTATCC 2 cut(s) 522, 1297
BclI TGATCA 2 cut(s) 1399, 1441
BcoDI GTCTC 7 cut(s) 43, 120, 276, 415, 468, 980, 1321
BfaI CTAG 2 cut(s) 1079, 1494
BfmI CTRYAG 3 cut(s) 853, 882, 1281
BfrI CTTAAG 1 cut(s) 682
BfuAI ACCTGC 2 cut(s) 846, 934
BfuI GTATCC 2 cut(s) 522, 1297
BglII AGATCT 1 cut(s) 1244
BisI GCNGC 6 cut(s) 138, 149, 183, 222, 882, 1529
BlsI GCNGC 6 cut(s) 139, 150, 184, 223, 883, 1530
Bme1390I CCNGG 3 cut(s) 608, 690, 1194
Bme18I GGWCC 3 cut(s) 203, 923, 1128
BmeRI GACNNNNNGTC 2 cut(s) 112, 901
BmgT120I GGNCC 5 cut(s) 203, 923, 1128, 1315, 1382
BmiI GGNNCC 6 cut(s) 205, 577, 832, 1032, 1068, 1129
BmrFI CCNGG 3 cut(s) 608, 690, 1194
BmrI ACTGGG 1 cut(s) 567
BmsI GCATC 2 cut(s) 938, 1002
BmuI ACTGGG 1 cut(s) 567
BpiI GAAGAC 1 cut(s) 540
BpmI CTGGAG 1 cut(s) 738
BpuEI CTTGAG 2 cut(s) 536, 1008
Bsa29I ATCGAT 1 cut(s) 81
BsaI GGTCTC 2 cut(s) 120, 1321
BsaJI CCNNGG 3 cut(s) 607, 689, 727
BsaWI WCCGGW 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 111, 151, 905, 1025
Bse1I ACTGG 4 cut(s) 515, 562, 755, 1070
Bse3DI GCAATG 1 cut(s) 451
BseBI CCWGG 3 cut(s) 608, 690, 1194
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 607, 689, 727
BseGI GGATG 3 cut(s) 701, 1264, 1402
BseLI CCNNNNNNNGG 5 cut(s) 49, 111, 151, 905, 1025
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 2 cut(s) 1137, 1295
BseNI ACTGG 4 cut(s) 515, 562, 755, 1070
BseRI GAGGAG 7 cut(s) 13, 16, 19, 294, 341, 360, 377
BseXI GCAGC 4 cut(s) 160, 208, 868, 1515
BsgI GTGCAG 3 cut(s) 951, 1080, 1228
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 4 cut(s) 523, 688, 1317, 1384
BshNI GGYRCC 1 cut(s) 1066
BshVI ATCGAT 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 2 cut(s) 171, 201
BslFI GGGAC 5 cut(s) 189, 792, 795, 1141, 1244
BslI CCNNNNNNNGG 5 cut(s) 49, 111, 151, 905, 1025
BsmAI GTCTC 7 cut(s) 43, 120, 276, 415, 468, 980, 1321
BsmBI CGTCTC 1 cut(s) 276
BsmFI GGGAC 5 cut(s) 189, 792, 795, 1141, 1244
BsmI GAATGC 1 cut(s) 674
BsnI GGCC 4 cut(s) 523, 688, 1317, 1384
Bso31I GGTCTC 2 cut(s) 120, 1321
Bsp1286I GDGCHC 1 cut(s) 9
Bsp19I CCATGG 1 cut(s) 727
BspACI CCGC 8 cut(s) 135, 138, 182, 185, 308, 359, 992, 1484
BspANI GGCC 4 cut(s) 523, 688, 1317, 1384
BspCNI CTCAG 2 cut(s) 1136, 1296
BspDI ATCGAT 1 cut(s) 81
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 6 cut(s) 205, 577, 832, 1032, 1068, 1129
BspMAI CTGCAG 3 cut(s) 857, 886, 1285
BspMI ACCTGC 2 cut(s) 846, 934
BspPI GGATC 8 cut(s) 203, 243, 570, 583, 853, 866, 898, 952
BspT107I GGYRCC 1 cut(s) 1066
BspTI CTTAAG 1 cut(s) 682
BspTNI GGTCTC 2 cut(s) 120, 1321
BsrDI GCAATG 1 cut(s) 451
BsrI ACTGG 4 cut(s) 515, 562, 755, 1070
BssECI CCNNGG 3 cut(s) 607, 689, 727
BssT1I CCWWGG 1 cut(s) 727
Bst2UI CCWGG 3 cut(s) 608, 690, 1194
Bst4CI ACNGT 5 cut(s) 123, 539, 1161, 1235, 1358
Bst6I CTCTTC 2 cut(s) 362, 432
BstAFI CTTAAG 1 cut(s) 682
BstC8I GCNNGC 5 cut(s) 715, 1091, 1095, 1319, 1386
BstDEI CTNAG 3 cut(s) 1123, 1304, 1465
BstDSI CCRYGG 1 cut(s) 727
BstF5I GGATG 3 cut(s) 701, 1264, 1402
BstFNI CGCG 1 cut(s) 182
BstMAI GTCTC 7 cut(s) 43, 120, 276, 415, 468, 980, 1321
BstMWI GCNNNNNNNGC 3 cut(s) 1000, 1314, 1490
BstNI CCWGG 3 cut(s) 608, 690, 1194
BstNSI RCATGY 1 cut(s) 1093
BstSCI CCNGG 3 cut(s) 606, 688, 1192
BstSFI CTRYAG 3 cut(s) 853, 882, 1281
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 4 cut(s) 160, 208, 868, 1515
BstV2I GAAGAC 1 cut(s) 540
BstX2I RGATCY 3 cut(s) 575, 890, 1244
BstYI RGATCY 3 cut(s) 575, 890, 1244
Bsu15I ATCGAT 1 cut(s) 81
BsuI GTATCC 2 cut(s) 522, 1297
BsuRI GGCC 4 cut(s) 523, 688, 1317, 1384
BsuTUI ATCGAT 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 727
BtsCI GGATG 3 cut(s) 701, 1264, 1402
BtsIMutI CAGTG 3 cut(s) 522, 1301, 1465
BveI ACCTGC 2 cut(s) 846, 934
Cac8I GCNNGC 5 cut(s) 715, 1091, 1095, 1319, 1386
CaiI CAGNNNCTG 1 cut(s) 151
Cfr13I GGNCC 5 cut(s) 203, 923, 1128, 1315, 1382
ClaI ATCGAT 1 cut(s) 81
CseI GACGC 2 cut(s) 188, 299
CviAII CATG 2 cut(s) 728, 1090
DdeI CTNAG 3 cut(s) 1123, 1304, 1465
DraI TTTAAA 1 cut(s) 616
DriI GACNNNNNGTC 2 cut(s) 112, 901
Eam1104I CTCTTC 2 cut(s) 362, 432
Eam1105I GACNNNNNGTC 2 cut(s) 112, 901
EarI CTCTTC 2 cut(s) 362, 432
EciI GGCGGA 1 cut(s) 374
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 727
Eco147I AGGCCT 1 cut(s) 523
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 2 cut(s) 120, 1321
Eco47I GGWCC 3 cut(s) 203, 923, 1128
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 2 cut(s) 546, 552
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 1315
EcoRI GAATTC 1 cut(s) 1178
EcoRII CCWGG 3 cut(s) 606, 688, 1192
EcoT14I CCWWGG 1 cut(s) 727
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 727
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 2 cut(s) 731, 1093
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FaqI GGGAC 5 cut(s) 189, 792, 795, 1141, 1244
FatI CATG 2 cut(s) 727, 1089
FauI CCCGC 1 cut(s) 1477
FauNDI CATATG 1 cut(s) 1108
FbaI TGATCA 2 cut(s) 1399, 1441
Fnu4HI GCNGC 6 cut(s) 138, 149, 183, 222, 882, 1529
FokI GGATG 3 cut(s) 708, 1251, 1389
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 6 cut(s) 138, 149, 183, 222, 882, 1529
FspBI CTAG 2 cut(s) 1079, 1494
GluI GCNGC 6 cut(s) 138, 149, 183, 222, 882, 1529
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 4 cut(s) 523, 688, 1317, 1384
HapII CCGG 2 cut(s) 171, 201
HgaI GACGC 2 cut(s) 188, 299
Hin1II CATG 2 cut(s) 731, 1093
HindIII AAGCTT 1 cut(s) 711
HinfI GANTC 3 cut(s) 14, 167, 988
HpaII CCGG 2 cut(s) 171, 201
HphI GGTGA 4 cut(s) 188, 587, 637, 857
Hpy166II GTNNAC 2 cut(s) 126, 923
Hpy188I TCNGA 7 cut(s) 13, 106, 166, 649, 895, 1278, 1338
Hpy188III TCNNGA 7 cut(s) 50, 206, 212, 553, 906, 1079, 1439
Hpy8I GTNNAC 2 cut(s) 126, 923
Hpy99I CGWCG 3 cut(s) 251, 290, 293
HpyAV CCTTC 6 cut(s) 335, 443, 475, 495, 622, 1044
HpyCH4III ACNGT 5 cut(s) 123, 539, 1161, 1235, 1358
HpyF10VI GCNNNNNNNGC 3 cut(s) 1000, 1314, 1490
HpyF3I CTNAG 3 cut(s) 1123, 1304, 1465
Hsp92II CATG 2 cut(s) 731, 1093
Ksp22I TGATCA 2 cut(s) 1399, 1441
LmnI GCTCC 4 cut(s) 4, 757, 836, 1497
Lsp1109I GCAGC 4 cut(s) 160, 208, 868, 1515
LweI GCATC 2 cut(s) 938, 1002
MaeI CTAG 2 cut(s) 1079, 1494
MaeIII GTNAC 3 cut(s) 176, 1407, 1460
MboII GAAGA 6 cut(s) 343, 379, 446, 449, 545, 1413
MflI RGATCY 3 cut(s) 575, 890, 1244
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 7 cut(s) 562, 786, 950, 1178, 1376, 1394, 1521
MlyI GAGTC 2 cut(s) 161, 982
MmeI TCCRAC 3 cut(s) 129, 189, 603
MseI TTAA 8 cut(s) 591, 615, 683, 768, 861, 980, 1220, 1415
MspA1I CMGCKG 2 cut(s) 151, 1528
MspCI CTTAAG 1 cut(s) 682
MspI CCGG 2 cut(s) 171, 201
MspR9I CCNGG 3 cut(s) 608, 690, 1194
Mva1269I GAATGC 1 cut(s) 674
MvaI CCWGG 3 cut(s) 608, 690, 1194
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 3 cut(s) 1000, 1314, 1490
NcoI CCATGG 1 cut(s) 727
NdeI CATATG 1 cut(s) 1108
NlaIII CATG 2 cut(s) 731, 1093
NlaIV GGNNCC 6 cut(s) 205, 577, 832, 1032, 1068, 1129
NmuCI GTSAC 2 cut(s) 176, 1460
NspI RCATGY 1 cut(s) 1093
PaeI GCATGC 1 cut(s) 1093
PceI AGGCCT 1 cut(s) 523
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PctI GAATGC 1 cut(s) 674
PfeI GAWTC 1 cut(s) 14
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 6 cut(s) 139, 150, 184, 223, 883, 1530
PleI GAGTC 2 cut(s) 161, 982
PpsI GAGTC 2 cut(s) 161, 982
PsiI TTATAA 1 cut(s) 1146
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 3 cut(s) 606, 688, 1192
PspGI CCWGG 3 cut(s) 606, 688, 1192
PspN4I GGNNCC 6 cut(s) 205, 577, 832, 1032, 1068, 1129
PspPI GGNCC 5 cut(s) 203, 923, 1128, 1315, 1382
PsrI GAACNNNNNNTAC 2 cut(s) 1501, 1533
PstI CTGCAG 3 cut(s) 857, 886, 1285
PstNI CAGNNNCTG 1 cut(s) 151
PsuI RGATCY 3 cut(s) 575, 890, 1244
PvuII CAGCTG 2 cut(s) 151, 1528
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 8 cut(s) 591, 615, 683, 768, 861, 980, 1220, 1415
SatI GCNGC 6 cut(s) 138, 149, 183, 222, 882, 1529
Sau96I GGNCC 5 cut(s) 203, 923, 1128, 1315, 1382
SchI GAGTC 2 cut(s) 161, 982
ScrFI CCNGG 3 cut(s) 608, 690, 1194
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 2 cut(s) 938, 1002
SfcI CTRYAG 3 cut(s) 853, 882, 1281
SinI GGWCC 3 cut(s) 203, 923, 1128
SmlI CTYRAG 3 cut(s) 551, 682, 1023
SmoI CTYRAG 3 cut(s) 551, 682, 1023
SphI GCATGC 1 cut(s) 1093
Sse9I AATT 7 cut(s) 562, 786, 950, 1178, 1376, 1394, 1521
SseBI AGGCCT 1 cut(s) 523
SsiI CCGC 8 cut(s) 135, 138, 182, 185, 308, 359, 992, 1484
SspI AATATT 1 cut(s) 1342
SspMI CTAG 2 cut(s) 1079, 1494
SstI GAGCTC 1 cut(s) 9
StuI AGGCCT 1 cut(s) 523
StyD4I CCNGG 3 cut(s) 606, 688, 1192
StyI CCWWGG 1 cut(s) 727
TaaI ACNGT 5 cut(s) 123, 539, 1161, 1235, 1358
TaqI TCGA 3 cut(s) 81, 399, 790
TaqII GACCGA 1 cut(s) 1145
TasI AATT 7 cut(s) 562, 786, 950, 1178, 1376, 1394, 1521
TauI GCSGC 2 cut(s) 140, 185
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 8 cut(s) 591, 615, 683, 768, 861, 980, 1220, 1415
Tru9I TTAA 8 cut(s) 591, 615, 683, 768, 861, 980, 1220, 1415
TscAI CASTG 3 cut(s) 522, 1308, 1465
TseFI GTSAC 2 cut(s) 176, 1460
TseI GCWGC 4 cut(s) 148, 221, 881, 1528
Tsp45I GTSAC 2 cut(s) 176, 1460
TspDTI ATGAA 3 cut(s) 426, 462, 1191
TspGWI ACGGA 3 cut(s) 420, 891, 1395
TspRI CASTG 3 cut(s) 522, 1308, 1465
Van91I CCANNNNNTGG 1 cut(s) 151
Vha464I CTTAAG 1 cut(s) 682
VpaK11BI GGWCC 3 cut(s) 203, 923, 1128
XapI RAATTY 3 cut(s) 1178, 1376, 1394
XbaI TCTAGA 1 cut(s) 1078
XceI RCATGY 1 cut(s) 1093
XspI CTAG 2 cut(s) 1079, 1494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.