Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011430

Physical Location & Seq

Genomic Coordinates Forward (+)

3956357 .. 3959681

Gene Structure 3325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1033000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAATGAGAGAGTCGTGGGGGAGGCGGGTTCACGAGCCCTGCCATGGAGGTCACCACGTTCAATTCGAACTTCGGCGAAGCTGAGTTTCCCGTGTGTGGGAAAAGATTGGGGCTGTTGTATATATGGAGCAATGGCTGTATTAGGAAGATTTATATGTTCCGTGACGGGGATTGATAGCATGGGAGGTTTCCAAGTGTCTTTTAGATGCAATTGTACAAGGGCTTGGATATGCAGCTCCTCCAATTATGGCCCTTCTTTTCATACTAGATTTGTGAAGGTATCTCCTCATGCTCGTGCTATTCGAGATGTAGAGGATGAAGAGCTTCGAAGCTTCTTTTATGGAATGTCACCTTTGCAGTTTATACTAATTGTTGCTGCAAGCTCTGTGGGTGAGGAGCTTTTCTACAGGGCTGCTGTTCAGGGATCATTGGCCGATATATTTCTAAGGGGCACAGATCTGATGACAGATGCTCGAGGAGTGGCGTCTCTGACTGGAGTTCTGCCCCCATTTGTCCCTTTTGCTCAGGCATTTGCAGCGGTGATTACGGCTGCGCTCACAGGTTCTCTGTACTATGTGGCAGCTTCTCCAAAAGATCCTGCTTATGTAGTTGCACCAGTTTTACAATCTCGCTCTGGTCGTGAAGACATGAAAAAGCTTTTTGCAGCTTGGTATCAGAGGAGACAAATGAAGAAGATTTACTCTCCCCTGCTTGAAGGACTTCTTGCCCTATATCTTGGTTTTGAGTGGATCCAGACGAACAATATGCTTACGCCTATGATCACGCACGGCATATACTCTGCTGTGATATTGGGTCATGGCCTTTGGAAGATACACGATCATCGGAAAAGACTACGCCAGAGGATCCAGCAGCTTAAAGTAGAAGGAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

299

Amino Acids

33.16

Weight (kDa)

9.7

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35260
fragaria_vesca	FvH4_5g21880
malus_domestica	MD00G1220600.v1.1 MD06G1033000.v1.1
prunus_persica	Prupe.5G038500_v2.0.a1
pyrus_communis	pycom06g02730
rosa_chinensis	RchiOBHm_Chr6g0284251 RchiOBHm_Chr7g0209431
rosa_laevigata	RLG00000003137
rosa_multiflora	Rmu_sc0001861.1_g000004 Rmu_sc0007059.1_g000001 Rmu_sc0015095.1_g000003
rosa_roxburghii	Rroxscaffold_3G00249470 Rroxscaffold_3G00250390
rosa_rugosa	Rorug07G0112500
rosa_samantha	Rh7AG246700 Rh7BG241700 Rh7CG262300 Rh7DG252900
rosa_wichuraiana	Rw7G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	26, 539
AclWI	GGATC	6 cut(s)	433, 590, 745, 758, 859, 872
AcoI	YGGCCR	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	485
AfaI	GTAC	2 cut(s)	217, 572
AfiI	CCNNNNNNNGG	4 cut(s)	45, 97, 98, 168
AgsI	TTSAA	2 cut(s)	63, 716
Alw26I	GTCTC	2 cut(s)	492, 676
AlwI	GGATC	6 cut(s)	433, 590, 745, 758, 859, 872
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	3 cut(s)	250, 432, 820
ApeKI	GCWGC	8 cut(s)	234, 377, 413, 536, 551, 581, 665, 871
Asp700I	GAANNNNTTC	2 cut(s)	324, 720
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	4 cut(s)	45, 342, 404, 553
AsuII	TTCGAA	2 cut(s)	67, 328
AvaI	CYCGRG	1 cut(s)	474
BaeGI	GKGCMC	1 cut(s)	455
BamHI	GGATCC	2 cut(s)	750, 864
BanII	GRGCYC	1 cut(s)	40
BarI	GAAGNNNNNNTAC	2 cut(s)	683, 715
BauI	CACGAG	2 cut(s)	33, 294
BbsI	GAAGAC	1 cut(s)	651
BbvI	GCAGC	8 cut(s)	246, 364, 400, 538, 548, 593, 677, 883
BceAI	ACGGC	2 cut(s)	564, 805
BcgI	CGANNNNNNTGC	2 cut(s)	748, 782
BclI	TGATCA	1 cut(s)	780
BcoDI	GTCTC	2 cut(s)	492, 676
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	406
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	8 cut(s)	235, 378, 414, 537, 552, 582, 666, 872
BlsI	GCNGC	8 cut(s)	236, 379, 415, 538, 553, 583, 667, 873
BmeT110I	CYCGRG	1 cut(s)	474
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	752, 866
BmsI	GCATC	2 cut(s)	197, 460
BpiI	GAAGAC	1 cut(s)	651
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu14I	TTCGAA	2 cut(s)	67, 328
BsaHI	GRCGYC	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 97, 98, 168
Bse1I	ACTGG	2 cut(s)	499, 617
Bse3DI	GCAATG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	4 cut(s)	45, 97, 98, 168
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	2 cut(s)	74, 539
BseNI	ACTGG	2 cut(s)	499, 617
BseRI	GAGGAG	5 cut(s)	229, 276, 410, 492, 694
BseSI	GKGCMC	1 cut(s)	455
BseXI	GCAGC	8 cut(s)	246, 364, 400, 538, 548, 593, 677, 883
BshFI	GGCC	3 cut(s)	252, 434, 822
BsiHKCI	CYCGRG	1 cut(s)	474
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	4 cut(s)	45, 97, 98, 168
BsmAI	GTCTC	2 cut(s)	492, 676
BsmBI	CGTCTC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	3 cut(s)	252, 434, 822
BsoBI	CYCGRG	1 cut(s)	474
Bsp119I	TTCGAA	2 cut(s)	67, 328
Bsp1286I	GDGCHC	2 cut(s)	40, 455
Bsp1407I	TGTACA	1 cut(s)	215
Bsp143I	GATC	7 cut(s)	425, 457, 595, 750, 780, 838, 864
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	2 cut(s)	26, 539
BspANI	GGCC	3 cut(s)	252, 434, 822
BspCNI	CTCAG	2 cut(s)	75, 538
BspLI	GGNNCC	2 cut(s)	752, 866
BspPI	GGATC	6 cut(s)	433, 590, 745, 758, 859, 872
BspQI	GCTCTTC	1 cut(s)	315
BspT104I	TTCGAA	2 cut(s)	67, 328
BsrDI	GCAATG	1 cut(s)	138
BsrGI	TGTACA	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	499, 617
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	7 cut(s)	425, 457, 595, 750, 780, 838, 864
BssNI	GRCGYC	1 cut(s)	485
BssSI	CACGAG	2 cut(s)	33, 294
BssT1I	CCWWGG	1 cut(s)	44
Bst2BI	CACGAG	2 cut(s)	33, 294
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	485
BstAUI	TGTACA	1 cut(s)	215
BstBI	TTCGAA	2 cut(s)	67, 328
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	3 cut(s)	83, 446, 525
BstDSI	CCRYGG	1 cut(s)	44
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	7 cut(s)	428, 460, 598, 753, 783, 841, 867
BstMAI	GTCTC	2 cut(s)	492, 676
BstMBI	GATC	7 cut(s)	425, 457, 595, 750, 780, 838, 864
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstPI	GGTNACC	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	406
BstSLI	GKGCMC	1 cut(s)	455
BstV1I	GCAGC	8 cut(s)	246, 364, 400, 538, 548, 593, 677, 883
BstV2I	GAAGAC	1 cut(s)	651
BstX2I	RGATCY	4 cut(s)	457, 595, 750, 864
BstYI	RGATCY	4 cut(s)	457, 595, 750, 864
BsuRI	GGCC	3 cut(s)	252, 434, 822
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	382
CfoI	GCGC	1 cut(s)	556
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	1 cut(s)	474
Csp6I	GTAC	2 cut(s)	216, 571
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviAII	CATG	5 cut(s)	45, 181, 290, 649, 818
CviQI	GTAC	2 cut(s)	216, 571
DdeI	CTNAG	3 cut(s)	83, 446, 525
DpnI	GATC	7 cut(s)	427, 459, 597, 752, 782, 840, 866
DpnII	GATC	7 cut(s)	425, 457, 595, 750, 780, 838, 864
EaeI	YGGCCR	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	474
Eco91I	GGTNACC	1 cut(s)	51
EcoO65I	GGTNACC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	44
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	5 cut(s)	48, 184, 293, 652, 821
FalI	AAGNNNNNCTT	2 cut(s)	708, 740
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	5 cut(s)	44, 180, 289, 648, 817
FauI	CCCGC	1 cut(s)	19
FbaI	TGATCA	1 cut(s)	780
Fnu4HI	GCNGC	8 cut(s)	235, 378, 414, 537, 552, 582, 666, 872
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	8 cut(s)	235, 378, 414, 537, 552, 582, 666, 872
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	8 cut(s)	235, 378, 414, 537, 552, 582, 666, 872
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	252, 434, 822
HgaI	GACGC	1 cut(s)	474
HhaI	GCGC	1 cut(s)	556
Hin1I	GRCGYC	1 cut(s)	485
Hin1II	CATG	5 cut(s)	48, 184, 293, 652, 821
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HindIII	AAGCTT	2 cut(s)	331, 656
HinfI	GANTC	1 cut(s)	12
HphI	GGTGA	4 cut(s)	45, 342, 404, 553
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	4 cut(s)	462, 492, 678, 846
Hpy188III	TCNNGA	4 cut(s)	33, 305, 641, 754
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	4 cut(s)	264, 271, 710, 878
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	7 cut(s)	210, 234, 358, 380, 536, 614, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	3 cut(s)	83, 446, 525
HpySE526I	ACGT	1 cut(s)	58
Hsp92I	GRCGYC	1 cut(s)	485
Hsp92II	CATG	5 cut(s)	48, 184, 293, 652, 821
HspAI	GCGC	1 cut(s)	554
Ksp22I	TGATCA	1 cut(s)	780
Kzo9I	GATC	7 cut(s)	425, 457, 595, 750, 780, 838, 864
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	3 cut(s)	128, 242, 397
Lsp1109I	GCAGC	8 cut(s)	246, 364, 400, 538, 548, 593, 677, 883
LweI	GCATC	2 cut(s)	197, 460
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	3 cut(s)	51, 163, 348
MalI	GATC	7 cut(s)	427, 459, 597, 752, 782, 840, 866
MboI	GATC	7 cut(s)	425, 457, 595, 750, 780, 838, 864
MboII	GAAGA	6 cut(s)	159, 332, 656, 703, 706, 841
MfeI	CAATTG	1 cut(s)	211
MflI	RGATCY	4 cut(s)	457, 595, 750, 864
MhlI	GDGCHC	2 cut(s)	40, 455
MluCI	AATT	4 cut(s)	63, 211, 244, 369
MlyI	GAGTC	1 cut(s)	21
MroXI	GAANNNNTTC	2 cut(s)	324, 720
MseI	TTAA	1 cut(s)	876
MslI	CAYNNNNRTG	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	539
MunI	CAATTG	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	536
NcoI	CCATGG	1 cut(s)	44
NdeII	GATC	7 cut(s)	425, 457, 595, 750, 780, 838, 864
NlaIII	CATG	5 cut(s)	48, 184, 293, 652, 821
NlaIV	GGNNCC	2 cut(s)	752, 866
NmuCI	GTSAC	3 cut(s)	51, 163, 348
NspV	TTCGAA	2 cut(s)	67, 328
PaeR7I	CTCGAG	1 cut(s)	474
PciSI	GCTCTTC	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	3 cut(s)	64, 301, 637
PdmI	GAANNNNTTC	2 cut(s)	324, 720
PkrI	GCNGC	8 cut(s)	236, 379, 415, 538, 553, 583, 667, 873
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
PspEI	GGTNACC	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	752, 866
PspPI	GGNCC	1 cut(s)	251
PspXI	VCTCGAGB	1 cut(s)	474
PsuI	RGATCY	4 cut(s)	457, 595, 750, 864
RsaI	GTAC	2 cut(s)	217, 572
RsaNI	GTAC	2 cut(s)	216, 571
RseI	CAYNNNNRTG	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	876
SatI	GCNGC	8 cut(s)	235, 378, 414, 537, 552, 582, 666, 872
Sau3AI	GATC	7 cut(s)	425, 457, 595, 750, 780, 838, 864
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	21
SduI	GDGCHC	2 cut(s)	40, 455
SfaNI	GCATC	2 cut(s)	197, 460
SfcI	CTRYAG	1 cut(s)	406
Sfr274I	CTCGAG	1 cut(s)	474
SfuI	TTCGAA	2 cut(s)	67, 328
SlaI	CTCGAG	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
Sse9I	AATT	4 cut(s)	63, 211, 244, 369
SsiI	CCGC	2 cut(s)	26, 539
SspMI	CTAG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	44
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	4 cut(s)	67, 304, 328, 475
TasI	AATT	4 cut(s)	63, 211, 244, 369
TatI	WGTACW	2 cut(s)	215, 570
Tru1I	TTAA	1 cut(s)	876
Tru9I	TTAA	1 cut(s)	876
TseFI	GTSAC	3 cut(s)	51, 163, 348
TseI	GCWGC	8 cut(s)	234, 377, 413, 536, 551, 581, 665, 871
Tsp45I	GTSAC	3 cut(s)	51, 163, 348
TspDTI	ATGAA	5 cut(s)	17, 251, 333, 665, 704
TspGWI	ACGGA	1 cut(s)	151
XhoI	CTCGAG	1 cut(s)	474
XmnI	GAANNNNTTC	2 cut(s)	324, 720
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.