Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001861.1

Orthogroup ID

OG0011430

Physical Location & Seq

Genomic Coordinates Forward (+)

18395 .. 19450

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001861.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgctcaatgaagacgacgaagacttcgtgagccaaccacccttctcgatttttgtgctcgtctctcgcaatggagcttccgctcatatcgctagccctactactagtacttccacggcgtcgtttggcagtaagctcgggctgtgcgattttccggtgacgagaaagaggcggatgggtttgtttgacggaggtagggtttctgggcggcaggttagggcttcggcggagcagaggagtagcgagggtattaatggaagtgagacggagagtggaggacggcggttcacgagtcctgccatggaggtcaccacattgaatccgagcttcaatgaagctgagtatcctgtttgggagaagattggtgctgttgttagatttagttatggaattggtatatatggtgcaatggctttagcgggtagatttatatgctcaatgatgggtatcgatatcgtgggaggtttcgagttaaatttagatgcaattgtactagggcttggatatgcagctccaaattctatgatattgggattgggtttggttacaaaagagcttggaggaaagataacaagaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

193

Amino Acids

20.54

Weight (kDa)

6.6

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35260
fragaria_vesca	FvH4_5g21880
malus_domestica	MD00G1220600.v1.1 MD06G1033000.v1.1
prunus_persica	Prupe.5G038500_v2.0.a1
pyrus_communis	pycom06g02730
rosa_chinensis	RchiOBHm_Chr6g0284251 RchiOBHm_Chr7g0209431
rosa_laevigata	RLG00000003137
rosa_multiflora	Rmu_sc0001861.1_g000004 Rmu_sc0007059.1_g000001 Rmu_sc0015095.1_g000003
rosa_roxburghii	Rroxscaffold_3G00249470 Rroxscaffold_3G00250390
rosa_rugosa	Rorug07G0112500
rosa_samantha	Rh7AG246700 Rh7BG241700 Rh7CG262300 Rh7DG252900
rosa_wichuraiana	Rw7G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AccBSI	CCGCTC	1 cut(s)	83
AciI	CCGC	6 cut(s)	81, 172, 208, 227, 283, 419
AcsI	RAATTY	2 cut(s)	475, 517
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	2 cut(s)	109, 492
AgsI	TTSAA	2 cut(s)	319, 331
AhlI	ACTAGT	1 cut(s)	104
AluBI	AGCT	6 cut(s)	77, 136, 327, 338, 512, 556
AluI	AGCT	6 cut(s)	77, 136, 327, 338, 512, 556
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	2 cut(s)	67, 257
Ama87I	CYCGRG	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	2 cut(s)	475, 517
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AseI	ATTAAT	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	169, 301
AsuNHI	GCTAGC	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	137
BauI	CACGAG	1 cut(s)	289
BbsI	GAAGAC	2 cut(s)	18, 27
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	521
BccI	CCATC	2 cut(s)	169, 436
BceAI	ACGGC	2 cut(s)	132, 296
BcgI	CGANNNNNNTGC	4 cut(s)	37, 71, 118, 152
BciVI	GTATCC	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	67, 257
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	3 cut(s)	93, 105, 494
BfuAI	ACCTGC	1 cut(s)	202
BfuI	GTATCC	1 cut(s)	354
BisI	GCNGC	2 cut(s)	209, 510
BlsI	GCNGC	2 cut(s)	210, 511
BmcAI	AGTACT	1 cut(s)	109
BmeT110I	CYCGRG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	472
BmtI	GCTAGC	1 cut(s)	96
BpiI	GAAGAC	2 cut(s)	18, 27
Bsa29I	ATCGAT	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	114, 300
BsaWI	WCCGGW	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bse3DI	GCAATG	2 cut(s)	76, 414
Bse8I	GATNNNNATC	1 cut(s)	446
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	2 cut(s)	114, 300
BseGI	GGATG	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	446
BseMI	GCAATG	2 cut(s)	76, 414
BseMII	CTCAG	1 cut(s)	330
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	521
BshVI	ATCGAT	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	155
BsmAI	GTCTC	2 cut(s)	67, 257
BsmBI	CGTCTC	2 cut(s)	67, 257
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	6 cut(s)	81, 172, 208, 227, 283, 419
BspCNI	CTCAG	1 cut(s)	331
BspDI	ATCGAT	1 cut(s)	450
BspMI	ACCTGC	1 cut(s)	202
BspOI	GCTAGC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	76, 414
BssECI	CCNNGG	2 cut(s)	114, 300
BssNI	GRCGYC	1 cut(s)	119
BssSI	CACGAG	1 cut(s)	289
BssT1I	CCWWGG	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	289
BstACI	GRCGYC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	339
BstDSI	CCRYGG	2 cut(s)	114, 300
BstEII	GGTNACC	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	180
BstMAI	GTCTC	2 cut(s)	67, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstPI	GGTNACC	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	521
BstV2I	GAAGAC	2 cut(s)	18, 27
Bsu15I	ATCGAT	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	354
BsuTUI	ATCGAT	1 cut(s)	450
BtgI	CCRYGG	2 cut(s)	114, 300
BtsCI	GGATG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	94
ClaI	ATCGAT	1 cut(s)	450
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	108, 491
CviAII	CATG	1 cut(s)	301
CviQI	GTAC	2 cut(s)	108, 491
DdeI	CTNAG	1 cut(s)	339
EciI	GGCGGA	2 cut(s)	187, 242
Eco130I	CCWWGG	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	454
Eco88I	CYCGRG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	307
EcoO65I	GGTNACC	1 cut(s)	307
EcoRV	GATATC	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
Esp3I	CGTCTC	2 cut(s)	67, 257
FaeI	CATG	1 cut(s)	304
FatI	CATG	1 cut(s)	300
FauI	CCCGC	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	209, 510
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	2 cut(s)	209, 510
FspBI	CTAG	3 cut(s)	93, 105, 494
GluI	GCNGC	2 cut(s)	209, 510
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	108
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	304
HinfI	GANTC	2 cut(s)	292, 319
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	2 cut(s)	169, 301
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	3 cut(s)	28, 46, 289
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	2 cut(s)	20, 124
HpyAV	CCTTC	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	407, 485, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	304
LmnI	GCTCC	3 cut(s)	74, 229, 517
LpnPI	CCDG	5 cut(s)	168, 189, 197, 309, 360
Lsp1109I	GCAGC	1 cut(s)	521
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	3 cut(s)	93, 105, 494
MaeIII	GTNAC	3 cut(s)	157, 307, 544
MbiI	CCGCTC	1 cut(s)	83
MboII	GAAGA	3 cut(s)	23, 32, 370
MfeI	CAATTG	1 cut(s)	486
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	4 cut(s)	390, 475, 486, 517
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	8 cut(s)	162, 185, 228, 238, 269, 298, 455, 554
MseI	TTAA	2 cut(s)	252, 473
MspI	CCGG	1 cut(s)	155
MunI	CAATTG	1 cut(s)	486
MwoI	GCNNNNNNNGC	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	300
NheI	GCTAGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	304
NmuCI	GTSAC	2 cut(s)	157, 307
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 144
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	2 cut(s)	210, 511
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
PshBI	ATTAAT	1 cut(s)	252
PspEI	GGTNACC	1 cut(s)	307
RsaI	GTAC	2 cut(s)	109, 492
RsaNI	GTAC	2 cut(s)	108, 491
SaqAI	TTAA	2 cut(s)	252, 473
SatI	GCNGC	2 cut(s)	209, 510
ScaI	AGTACT	1 cut(s)	109
SchI	GAGTC	1 cut(s)	301
SduI	GDGCHC	1 cut(s)	60
SfaNI	GCATC	1 cut(s)	472
SpeI	ACTAGT	1 cut(s)	104
Sse9I	AATT	4 cut(s)	390, 475, 486, 517
SsiI	CCGC	6 cut(s)	81, 172, 208, 227, 283, 419
SspMI	CTAG	3 cut(s)	93, 105, 494
StyI	CCWWGG	1 cut(s)	300
TaqI	TCGA	3 cut(s)	47, 450, 468
TasI	AATT	4 cut(s)	390, 475, 486, 517
TatI	WGTACW	2 cut(s)	107, 490
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	2 cut(s)	252, 473
Tru9I	TTAA	2 cut(s)	252, 473
TseFI	GTSAC	2 cut(s)	157, 307
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	2 cut(s)	157, 307
TspDTI	ATGAA	2 cut(s)	24, 348
TspGWI	ACGGA	2 cut(s)	204, 281
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	2 cut(s)	475, 517
XspI	CTAG	3 cut(s)	93, 105, 494
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.