Rh7BG241700

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011430
Physical Location & Seq
Forward (+)
21322910 .. 21326709
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG241700.1

Sequence Viewer

Length: 1113 bp
ATGGAGCTTCCGCTCATATCGCTAGCCGCTACTACTAGTACTACTTCGACGGCGTCGTTTGGCAGTAAGCTCGGGCTGTGCGATTTTCCGGTGACGAGAAAGAGGCGGACGGGTTTGTCCGACGGAGGTAGGGTTTCTGTGCGGCAGGTTAGGGCTTCGGCGGAGCAGAGGAGTAGCGAGGGTATTAATGGAAGTGAGGCGGAGAGTGGAAGACGGCGGTTCACGAGTCCTGCCATGGAGGTCACCACATTGAATCCGAGCTTCAATGAAGCTGAGTATCCTGTTTGGGAGAAGATTGGTGCTGTTGTTAGACTTAGTTATGGAATTGGTATATATGGTGCAATGGCTTTAGCGGGTAGATTTATATGCTCAACGATGGGTATCGATATCGTGGGAGGTTTCGAGTTAAATTTAGATGCAATTGTACAAGGGCTTGGATATGCAGCTCCACCAATCATGGCGCTTCTTTTTATACTCGATGATGAAGTTGTAAAGTTATCACCTCATGCACGTGCAATTAGAGACGTAGAGGATGAGGAGCTGCGCAGTTTCTTTTATGGAATGTCACCATTGCAGTTCATACTAATTGTTACTGCAAGCTCTTTGGGAGAGGAACTTTTCTACAGGGCTGCTGTTCAGGGATCATTAGCCGAGATATTTTTGAAGGGAACAGATCTGGTCACAGACATTCGAGGAATGGCATCTCTGTCTGGGGTTCTACCCCCATTTGTCCCATTTGCTCAGGCATTTGCAGCAGTGATCACAGCTGCTCTTACAGGTTCTTTGTACTATGTGGCTGCCTCTCCAAAAGATCCTGCTTATGTAGTTGCACCAGTTTTACAATCTCGCTCTGGTCGTGAAGATCTGAAAAAGCTGTTTGCAGCTTGGTATCAGAGAAGGCAAATGAAGAAGATCTACTCTCCCCTTCTTGAAGGACTTTTGGCCCTCTATCTCGGTTTTGAGTGGAACCAGACGAATAATCTTCTTGCACCTATGATCACCCACGGCATATATTCTGCTGTGATATTGGGTCATGGCCTTTGGAAGATACATGATCATCGTAAACGACTACATCAGAGAATCGAGCAGCTTAAAGAACAAAGTAGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

370

Amino Acids

40.58

Weight (kDa)

8.41

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rce1-like PF02517 190 - 340 7e-06 Type II CAAX prenyl endopeptidase Rce1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 115
Acc16I TGCGCA 1 cut(s) 545
Acc36I ACCTGC 1 cut(s) 136
AccBSI CCGCTC 1 cut(s) 13
AciI CCGC 8 cut(s) 11, 27, 106, 142, 161, 200, 217, 353
AclWI GGATC 2 cut(s) 649, 806
AcsI RAATTY 1 cut(s) 409
AcvI CACGTG 1 cut(s) 512
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 3 cut(s) 40, 426, 788
AgsI TTSAA 4 cut(s) 253, 265, 664, 932
AhlI ACTAGT 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 516
AlwI GGATC 2 cut(s) 649, 806
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 2 cut(s) 942, 1036
ApeKI GCWGC 8 cut(s) 443, 541, 629, 752, 767, 797, 881, 1087
ApoI RAATTY 1 cut(s) 409
AseI ATTAAT 1 cut(s) 186
AspLEI GCGC 2 cut(s) 463, 546
AspS9I GGNCC 1 cut(s) 943
AsuHPI GGTGA 5 cut(s) 103, 235, 492, 558, 991
AsuNHI GCTAGC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 71
BarI GAAGNNNNNNTAC 2 cut(s) 899, 931
BauI CACGAG 1 cut(s) 223
BbrPI CACGTG 1 cut(s) 512
BbsI GAAGAC 1 cut(s) 217
BbvI GCAGC 8 cut(s) 455, 528, 616, 754, 764, 784, 893, 1099
BccI CCATC 1 cut(s) 370
BceAI ACGGC 3 cut(s) 66, 230, 1021
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciVI GTATCC 1 cut(s) 288
BclI TGATCA 3 cut(s) 759, 996, 1054
BcoDI GTCTC 1 cut(s) 516
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 2 cut(s) 23, 36
BfmI CTRYAG 1 cut(s) 622
BfoI RGCGCY 1 cut(s) 464
BfuAI ACCTGC 1 cut(s) 136
BfuI GTATCC 1 cut(s) 288
BglII AGATCT 3 cut(s) 673, 862, 912
BmcAI AGTACT 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 943
BmiI GGNNCC 1 cut(s) 968
BmsI GCATC 2 cut(s) 406, 710
BmtI GCTAGC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 217
Bpu10I CCTNAGC 1 cut(s) 741
Bsa29I ATCGAT 1 cut(s) 384
BsaAI YACGTR 1 cut(s) 512
BsaBI GATNNNNATC 1 cut(s) 380
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 234, 1003
BsaWI WCCGGW 1 cut(s) 88
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bse1I ACTGG 1 cut(s) 833
Bse3DI GCAATG 2 cut(s) 348, 569
Bse8I GATNNNNATC 1 cut(s) 380
BseCI ATCGAT 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 234, 1003
BseGI GGATG 1 cut(s) 538
BseJI GATNNNNATC 1 cut(s) 380
BseMI GCAATG 2 cut(s) 348, 569
BseMII CTCAG 2 cut(s) 264, 755
BseNI ACTGG 1 cut(s) 833
BseRI GAGGAG 2 cut(s) 184, 551
BseXI GCAGC 8 cut(s) 455, 528, 616, 754, 764, 784, 893, 1099
BshFI GGCC 2 cut(s) 944, 1038
BshVI ATCGAT 1 cut(s) 384
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 716
BsmAI GTCTC 1 cut(s) 516
BsmBI CGTCTC 1 cut(s) 516
BsmFI GGGAC 1 cut(s) 716
BsnI GGCC 2 cut(s) 944, 1038
BsoBI CYCGRG 1 cut(s) 71
Bsp1407I TGTACA 1 cut(s) 424
Bsp143I GATC 8 cut(s) 641, 673, 759, 811, 862, 912, 996, 1054
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 8 cut(s) 11, 27, 106, 142, 161, 200, 217, 353
BspANI GGCC 2 cut(s) 944, 1038
BspCNI CTCAG 2 cut(s) 265, 754
BspDI ATCGAT 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 968
BspMI ACCTGC 1 cut(s) 136
BspOI GCTAGC 1 cut(s) 26
BspPI GGATC 2 cut(s) 649, 806
BsrBI CCGCTC 1 cut(s) 13
BsrDI GCAATG 2 cut(s) 348, 569
BsrGI TGTACA 1 cut(s) 424
BsrI ACTGG 1 cut(s) 833
BssECI CCNNGG 2 cut(s) 234, 1003
BssMI GATC 8 cut(s) 641, 673, 759, 811, 862, 912, 996, 1054
BssNI GRCGYC 1 cut(s) 53
BssSI CACGAG 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 223
BstACI GRCGYC 1 cut(s) 53
BstAUI TGTACA 1 cut(s) 424
BstBAI YACGTR 1 cut(s) 512
BstC8I GCNNGC 2 cut(s) 24, 598
BstDEI CTNAG 3 cut(s) 273, 314, 741
BstDSI CCRYGG 2 cut(s) 234, 1003
BstEII GGTNACC 1 cut(s) 241
BstF5I GGATG 1 cut(s) 538
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 2 cut(s) 463, 546
BstKTI GATC 8 cut(s) 644, 676, 762, 814, 865, 915, 999, 1057
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 8 cut(s) 641, 673, 759, 811, 862, 912, 996, 1054
BstMWI GCNNNNNNNGC 2 cut(s) 19, 752
BstPI GGTNACC 1 cut(s) 241
BstSFI CTRYAG 1 cut(s) 622
BstV1I GCAGC 8 cut(s) 455, 528, 616, 754, 764, 784, 893, 1099
BstV2I GAAGAC 1 cut(s) 217
BstX2I RGATCY 4 cut(s) 673, 811, 862, 912
BstYI RGATCY 4 cut(s) 673, 811, 862, 912
Bsu15I ATCGAT 1 cut(s) 384
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 2 cut(s) 944, 1038
BsuTUI ATCGAT 1 cut(s) 384
BtgI CCRYGG 2 cut(s) 234, 1003
BtsCI GGATG 1 cut(s) 538
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 1 cut(s) 762
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 24, 598
CfoI GCGC 2 cut(s) 463, 546
Cfr13I GGNCC 1 cut(s) 943
ClaI ATCGAT 1 cut(s) 384
CseI GACGC 1 cut(s) 42
Csp6I GTAC 3 cut(s) 39, 425, 787
CviAII CATG 5 cut(s) 235, 457, 506, 1034, 1052
CviQI GTAC 3 cut(s) 39, 425, 787
DdeI CTNAG 3 cut(s) 273, 314, 741
DpnI GATC 8 cut(s) 643, 675, 761, 813, 864, 914, 998, 1056
DpnII GATC 8 cut(s) 641, 673, 759, 811, 862, 912, 996, 1054
DrdI GACNNNNNNGTC 1 cut(s) 115
DseDI GACNNNNNNGTC 1 cut(s) 115
EciI GGCGGA 3 cut(s) 121, 176, 215
Eco130I CCWWGG 1 cut(s) 234
Eco32I GATATC 1 cut(s) 388
Eco72I CACGTG 1 cut(s) 512
Eco88I CYCGRG 1 cut(s) 71
Eco91I GGTNACC 1 cut(s) 241
EcoO65I GGTNACC 1 cut(s) 241
EcoRV GATATC 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 516
FaeI CATG 5 cut(s) 238, 460, 509, 1037, 1055
FaqI GGGAC 1 cut(s) 716
FatI CATG 5 cut(s) 234, 456, 505, 1033, 1051
FauI CCCGC 1 cut(s) 346
FbaI TGATCA 3 cut(s) 759, 996, 1054
FokI GGATG 1 cut(s) 545
FspBI CTAG 2 cut(s) 23, 36
FspI TGCGCA 1 cut(s) 545
GlaI GCGC 2 cut(s) 462, 545
HaeII RGCGCY 1 cut(s) 464
HaeIII GGCC 2 cut(s) 944, 1038
HapII CCGG 1 cut(s) 89
HgaI GACGC 1 cut(s) 42
HhaI GCGC 2 cut(s) 463, 546
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 5 cut(s) 238, 460, 509, 1037, 1055
Hin6I GCGC 2 cut(s) 461, 544
HinP1I GCGC 2 cut(s) 461, 544
HinfI GANTC 3 cut(s) 226, 253, 1080
HpaII CCGG 1 cut(s) 89
HphI GGTGA 5 cut(s) 103, 235, 492, 558, 991
Hpy166II GTNNAC 2 cut(s) 222, 1064
Hpy188I TCNGA 5 cut(s) 121, 258, 867, 894, 1077
Hpy188III TCNNGA 3 cut(s) 223, 857, 929
Hpy8I GTNNAC 2 cut(s) 222, 1064
Hpy99I CGWCG 3 cut(s) 52, 58, 125
HpyAV CCTTC 4 cut(s) 658, 891, 926, 935
HpyCH4IV ACGT 2 cut(s) 511, 525
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 752
HpyF3I CTNAG 3 cut(s) 273, 314, 741
HpySE526I ACGT 2 cut(s) 511, 525
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 5 cut(s) 238, 460, 509, 1037, 1055
HspAI GCGC 2 cut(s) 461, 544
Ksp22I TGATCA 3 cut(s) 759, 996, 1054
Kzo9I GATC 8 cut(s) 641, 673, 759, 811, 862, 912, 996, 1054
LmnI GCTCC 4 cut(s) 4, 163, 451, 538
Lsp1109I GCAGC 8 cut(s) 455, 528, 616, 754, 764, 784, 893, 1099
LweI GCATC 2 cut(s) 406, 710
MaeI CTAG 2 cut(s) 23, 36
MaeII ACGT 2 cut(s) 511, 525
MaeIII GTNAC 5 cut(s) 91, 241, 564, 589, 679
MalI GATC 8 cut(s) 643, 675, 761, 813, 864, 914, 998, 1056
MbiI CCGCTC 1 cut(s) 13
MboI GATC 8 cut(s) 641, 673, 759, 811, 862, 912, 996, 1054
MboII GAAGA 7 cut(s) 222, 304, 872, 919, 922, 974, 1057
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 4 cut(s) 673, 811, 862, 912
MluCI AATT 5 cut(s) 324, 409, 420, 516, 585
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 144
MseI TTAA 3 cut(s) 186, 407, 1092
MslI CAYNNNNRTG 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 767
MspI CCGG 1 cut(s) 89
MunI CAATTG 1 cut(s) 420
MwoI GCNNNNNNNGC 2 cut(s) 19, 752
NcoI CCATGG 1 cut(s) 234
NdeII GATC 8 cut(s) 641, 673, 759, 811, 862, 912, 996, 1054
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 5 cut(s) 238, 460, 509, 1037, 1055
NlaIV GGNNCC 1 cut(s) 968
NmeAIII GCCGAG 1 cut(s) 676
NmuCI GTSAC 4 cut(s) 91, 241, 564, 679
NsbI TGCGCA 1 cut(s) 545
PcsI WCGNNNNNNNCGW 3 cut(s) 53, 78, 853
PfeI GAWTC 2 cut(s) 253, 1080
PflFI GACNNNGTC 1 cut(s) 52
PleI GAGTC 1 cut(s) 234
PmaCI CACGTG 1 cut(s) 512
PmlI CACGTG 1 cut(s) 512
PpsI GAGTC 1 cut(s) 234
Ppu21I YACGTR 1 cut(s) 512
PshBI ATTAAT 1 cut(s) 186
PspCI CACGTG 1 cut(s) 512
PspEI GGTNACC 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 968
PspPI GGNCC 1 cut(s) 943
PsuI RGATCY 4 cut(s) 673, 811, 862, 912
PsyI GACNNNGTC 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 767
RsaI GTAC 3 cut(s) 40, 426, 788
RsaNI GTAC 3 cut(s) 39, 425, 787
RseI CAYNNNNRTG 1 cut(s) 510
SaqAI TTAA 3 cut(s) 186, 407, 1092
Sau3AI GATC 8 cut(s) 641, 673, 759, 811, 862, 912, 996, 1054
Sau96I GGNCC 1 cut(s) 943
ScaI AGTACT 1 cut(s) 40
SchI GAGTC 1 cut(s) 235
SfaNI GCATC 2 cut(s) 406, 710
SfcI CTRYAG 1 cut(s) 622
SmiMI CAYNNNNRTG 1 cut(s) 510
SpeI ACTAGT 1 cut(s) 35
Sse9I AATT 5 cut(s) 324, 409, 420, 516, 585
SsiI CCGC 8 cut(s) 11, 27, 106, 142, 161, 200, 217, 353
SspMI CTAG 2 cut(s) 23, 36
StyI CCWWGG 1 cut(s) 234
TaiI ACGT 2 cut(s) 514, 528
TaqI TCGA 6 cut(s) 47, 384, 402, 477, 691, 1083
TasI AATT 5 cut(s) 324, 409, 420, 516, 585
TatI WGTACW 3 cut(s) 38, 424, 786
TauI GCSGC 2 cut(s) 29, 145
TfiI GAWTC 2 cut(s) 253, 1080
Tru1I TTAA 3 cut(s) 186, 407, 1092
Tru9I TTAA 3 cut(s) 186, 407, 1092
TscAI CASTG 1 cut(s) 762
TseFI GTSAC 4 cut(s) 91, 241, 564, 679
TseI GCWGC 8 cut(s) 443, 541, 629, 752, 767, 797, 881, 1087
Tsp45I GTSAC 4 cut(s) 91, 241, 564, 679
TspDTI ATGAA 4 cut(s) 282, 498, 568, 920
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 762
Tth111I GACNNNGTC 1 cut(s) 52
VspI ATTAAT 1 cut(s) 186
XapI RAATTY 1 cut(s) 409
XspI CTAG 2 cut(s) 23, 36
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.