Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011430

Physical Location & Seq

Genomic Coordinates Forward (+)

13233655 .. 13237700

Gene Structure 4046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g21880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAGCTTCCGCTCCTTTCGCTAACAAGTCCTACTAGTACTTCGACGGCGTCGTTTTGCAGTAAGCGGAGTCTGTGCGAATTTGCGGTGGGGAGGAAGAGGCGGACGGGGTTGTGCGACGGAGGTAGGGTTTGTGTGCGGCGGGTTAGGGCTTCGGCGGAGCAGAGGAGTAGCGAGGGTATTAATGGAAGGGAGGCGGAGAGTGGAGGACGACGGTTCACGAGTCCGGCGATGGAGGTCACGACTTTGAATACGAGCTTCGGCGAAGCTGAGTATCCTGTTTGGGAGAAGATCGGCGCTGTTGTTAGACTTAGCTATGGAATTGGTATATATGGTGGAATGGCTTTAGTGGGTAGATTTATATGCTCAATGATTGGTATTGATAGCTTGGGAGGTTTCGAGTTAAATTTGGATGCAATTGTACAAGGGCTTGGATATGCAGCTCCACCGATCATGGCGCTTCTGTTTATACTCGATGATGAAGTTGTAAAGGTATCACCTCATGCACGTGCAATTAGAGATGTTGAGGATGAGGAGCTCCGCAGTTTCTTTTATGGAATGTCACCATTGCAGTTCATACTAATTGTTACTGCAAGCTCTATGGGGGAGGAGCTTTTCTACAGGGCTGCTGTTCAGGGATCATTGGCTGAGATATTTTTGAAGGGCACAGATCTAGTAACAGATGTTCGAGGAATGGCATCTCTGTCTGGGGTTCTACCCCCATTTGTCCCATTTGCTCAGGCATTTGCAGCAGTGATCACAGCTGCTCTTACAGGTTCTTTGTACTATGTGGCTGCCTCTCCTAAAGATCCTGCTTATGTAGTTGCACCAGTTTTACAATCTCGCTCTGGTCGTGAAGATATGAAAAAGCTGTTTGCAGCTTGGTATCAGAGAAGGCAAATGAAGAAGATCTACTCTCCCCTTCTTGAAGGACTTCTGGCCCTCTATCTCGGTTTTGAATGGAATCAGACGAATAACATTCTAGCACCTATGATCACACACGGTATATATTCTGCTGTGATACTGGGTCATGGCCTTTGGAAGATACATGATCATCGTAGACGACTGCACCAGAGAATCGAACAGCTTAAAGACGAAGGTAGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

370

Amino Acids

40.49

Weight (kDa)

8.21

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35260
fragaria_vesca	FvH4_5g21880
malus_domestica	MD00G1220600.v1.1 MD06G1033000.v1.1
prunus_persica	Prupe.5G038500_v2.0.a1
pyrus_communis	pycom06g02730
rosa_chinensis	RchiOBHm_Chr6g0284251 RchiOBHm_Chr7g0209431
rosa_laevigata	RLG00000003137
rosa_multiflora	Rmu_sc0001861.1_g000004 Rmu_sc0007059.1_g000001 Rmu_sc0015095.1_g000003
rosa_roxburghii	Rroxscaffold_3G00249470 Rroxscaffold_3G00250390
rosa_rugosa	Rorug07G0112500
rosa_samantha	Rh7AG246700 Rh7BG241700 Rh7CG262300 Rh7DG252900
rosa_wichuraiana	Rw7G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	13
AccI	GTMKAC	1 cut(s)	1060
AciI	CCGC	9 cut(s)	11, 67, 86, 103, 139, 142, 158, 197, 541
AclWI	GGATC	2 cut(s)	646, 803
AcsI	RAATTY	2 cut(s)	80, 406
AcvI	CACGTG	1 cut(s)	509
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	3 cut(s)	40, 423, 785
AgsI	TTSAA	4 cut(s)	250, 661, 929, 959
AhlI	ACTAGT	1 cut(s)	35
Alw21I	GWGCWC	1 cut(s)	540
AlwI	GGATC	2 cut(s)	646, 803
AoxI	GGCC	2 cut(s)	939, 1033
ApeKI	GCWGC	6 cut(s)	440, 626, 749, 764, 794, 878
ApoI	RAATTY	2 cut(s)	80, 406
AseI	ATTAAT	1 cut(s)	183
Asp700I	GAANNNNTTC	1 cut(s)	933
AspLEI	GCGC	2 cut(s)	299, 460
AspS9I	GGNCC	1 cut(s)	940
AsuHPI	GGTGA	2 cut(s)	489, 555
BaeGI	GKGCMC	1 cut(s)	668
BanII	GRGCYC	1 cut(s)	540
BarI	GAAGNNNNNNTAC	2 cut(s)	896, 928
BauI	CACGAG	1 cut(s)	220
BbrPI	CACGTG	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	6 cut(s)	452, 613, 751, 761, 781, 890
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	1 cut(s)	63
BciVI	GTATCC	1 cut(s)	285
BclI	TGATCA	3 cut(s)	756, 993, 1051
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	4 cut(s)	36, 674, 983, 1108
BfmI	CTRYAG	1 cut(s)	619
BfoI	RGCGCY	2 cut(s)	300, 461
BfuI	GTATCC	1 cut(s)	285
BglII	AGATCT	2 cut(s)	670, 909
BisI	GCNGC	7 cut(s)	140, 441, 627, 750, 765, 795, 879
BlsI	GCNGC	7 cut(s)	141, 442, 628, 751, 766, 796, 880
BmcAI	AGTACT	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	940
BmrI	ACTGGG	1 cut(s)	1034
BmsI	GCATC	2 cut(s)	403, 707
BmuI	ACTGGG	1 cut(s)	1034
Bpu10I	CCTNAGC	1 cut(s)	738
BsaAI	YACGTR	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bse1I	ACTGG	2 cut(s)	830, 1029
Bse3DI	GCAATG	1 cut(s)	566
BseGI	GGATG	2 cut(s)	418, 535
BseMI	GCAATG	1 cut(s)	566
BseMII	CTCAG	3 cut(s)	261, 639, 752
BseNI	ACTGG	2 cut(s)	830, 1029
BseRI	GAGGAG	3 cut(s)	181, 548, 623
BseSI	GKGCMC	1 cut(s)	668
BseXI	GCAGC	6 cut(s)	452, 613, 751, 761, 781, 890
BsgI	GTGCAG	1 cut(s)	1052
BshFI	GGCC	2 cut(s)	941, 1035
BsiHKAI	GWGCWC	1 cut(s)	540
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	713
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	2 cut(s)	941, 1035
Bsp1286I	GDGCHC	2 cut(s)	540, 668
Bsp1407I	TGTACA	1 cut(s)	421
Bsp143I	GATC	9 cut(s)	291, 450, 638, 670, 756, 808, 909, 993, 1051
BspACI	CCGC	9 cut(s)	11, 67, 86, 103, 139, 142, 158, 197, 541
BspANI	GGCC	2 cut(s)	941, 1035
BspCNI	CTCAG	3 cut(s)	262, 640, 751
BspPI	GGATC	2 cut(s)	646, 803
BsrBI	CCGCTC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	566
BsrGI	TGTACA	1 cut(s)	421
BsrI	ACTGG	2 cut(s)	830, 1029
BssMI	GATC	9 cut(s)	291, 450, 638, 670, 756, 808, 909, 993, 1051
BssNI	GRCGYC	1 cut(s)	50
BssSI	CACGAG	1 cut(s)	220
Bst2BI	CACGAG	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	216, 1004
Bst6I	CTCTTC	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	421
BstBAI	YACGTR	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	595
BstDEI	CTNAG	4 cut(s)	270, 311, 648, 738
BstF5I	GGATG	2 cut(s)	418, 535
BstH2I	RGCGCY	2 cut(s)	300, 461
BstHHI	GCGC	2 cut(s)	299, 460
BstKTI	GATC	9 cut(s)	294, 453, 641, 673, 759, 811, 912, 996, 1054
BstMBI	GATC	9 cut(s)	291, 450, 638, 670, 756, 808, 909, 993, 1051
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 749
BstSFI	CTRYAG	1 cut(s)	619
BstSLI	GKGCMC	1 cut(s)	668
BstV1I	GCAGC	6 cut(s)	452, 613, 751, 761, 781, 890
BstX2I	RGATCY	3 cut(s)	670, 808, 909
BstYI	RGATCY	3 cut(s)	670, 808, 909
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	941, 1035
BtgZI	GCGATG	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	418, 535
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	1 cut(s)	759
Cac8I	GCNNGC	1 cut(s)	595
CfoI	GCGC	2 cut(s)	299, 460
Cfr13I	GGNCC	1 cut(s)	940
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	3 cut(s)	39, 422, 784
CviAII	CATG	4 cut(s)	454, 503, 1031, 1049
CviQI	GTAC	3 cut(s)	39, 422, 784
DdeI	CTNAG	4 cut(s)	270, 311, 648, 738
DpnI	GATC	9 cut(s)	293, 452, 640, 672, 758, 810, 911, 995, 1053
DpnII	GATC	9 cut(s)	291, 450, 638, 670, 756, 808, 909, 993, 1051
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	3 cut(s)	118, 173, 212
Ecl136II	GAGCTC	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	540
Eco53kI	GAGCTC	1 cut(s)	538
Eco72I	CACGTG	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	538
EcoT38I	GRGCYC	1 cut(s)	540
FaeI	CATG	4 cut(s)	457, 506, 1034, 1052
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	4 cut(s)	453, 502, 1030, 1048
FauI	CCCGC	1 cut(s)	135
FbaI	TGATCA	3 cut(s)	756, 993, 1051
FblI	GTMKAC	1 cut(s)	1060
Fnu4HI	GCNGC	7 cut(s)	140, 441, 627, 750, 765, 795, 879
FokI	GGATG	2 cut(s)	425, 542
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	7 cut(s)	140, 441, 627, 750, 765, 795, 879
FspBI	CTAG	4 cut(s)	36, 674, 983, 1108
GlaI	GCGC	2 cut(s)	298, 459
GluI	GCNGC	7 cut(s)	140, 441, 627, 750, 765, 795, 879
HaeII	RGCGCY	2 cut(s)	300, 461
HaeIII	GGCC	2 cut(s)	941, 1035
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	2 cut(s)	299, 460
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	4 cut(s)	457, 506, 1034, 1052
Hin6I	GCGC	2 cut(s)	297, 458
HinP1I	GCGC	2 cut(s)	297, 458
HinfI	GANTC	4 cut(s)	70, 223, 964, 1077
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	2 cut(s)	489, 555
Hpy166II	GTNNAC	2 cut(s)	219, 1061
Hpy188I	TCNGA	2 cut(s)	891, 969
Hpy188III	TCNNGA	4 cut(s)	220, 241, 854, 926
Hpy8I	GTNNAC	2 cut(s)	219, 1061
Hpy99I	CGWCG	4 cut(s)	49, 55, 122, 216
HpyAV	CCTTC	6 cut(s)	183, 655, 888, 923, 932, 1091
HpyCH4III	ACNGT	2 cut(s)	216, 1004
HpyCH4IV	ACGT	1 cut(s)	508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 749
HpyF3I	CTNAG	4 cut(s)	270, 311, 648, 738
HpySE526I	ACGT	1 cut(s)	508
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	4 cut(s)	457, 506, 1034, 1052
HspAI	GCGC	2 cut(s)	297, 458
Ksp22I	TGATCA	3 cut(s)	756, 993, 1051
Kzo9I	GATC	9 cut(s)	291, 450, 638, 670, 756, 808, 909, 993, 1051
LmnI	GCTCC	7 cut(s)	4, 18, 160, 448, 535, 543, 610
Lsp1109I	GCAGC	6 cut(s)	452, 613, 751, 761, 781, 890
LweI	GCATC	2 cut(s)	403, 707
MaeI	CTAG	4 cut(s)	36, 674, 983, 1108
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	5 cut(s)	238, 561, 586, 676, 1103
MalI	GATC	9 cut(s)	293, 452, 640, 672, 758, 810, 911, 995, 1053
MbiI	CCGCTC	1 cut(s)	13
MboI	GATC	9 cut(s)	291, 450, 638, 670, 756, 808, 909, 993, 1051
MboII	GAAGA	6 cut(s)	109, 301, 869, 916, 919, 1054
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	3 cut(s)	670, 808, 909
MhlI	GDGCHC	2 cut(s)	540, 668
MluCI	AATT	6 cut(s)	80, 321, 406, 417, 513, 582
MlyI	GAGTC	2 cut(s)	79, 232
MroXI	GAANNNNTTC	1 cut(s)	933
MseI	TTAA	3 cut(s)	183, 404, 1089
MslI	CAYNNNNRTG	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	764
MspI	CCGG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	417
MwoI	GCNNNNNNNGC	2 cut(s)	19, 749
NdeII	GATC	9 cut(s)	291, 450, 638, 670, 756, 808, 909, 993, 1051
NlaIII	CATG	4 cut(s)	457, 506, 1034, 1052
NmuCI	GTSAC	3 cut(s)	238, 561, 1103
PcsI	WCGNNNNNNNCGW	3 cut(s)	50, 227, 850
PdmI	GAANNNNTTC	1 cut(s)	933
PfeI	GAWTC	2 cut(s)	964, 1077
PflFI	GACNNNGTC	1 cut(s)	49
PkrI	GCNGC	7 cut(s)	141, 442, 628, 751, 766, 796, 880
PleI	GAGTC	2 cut(s)	78, 231
PmaCI	CACGTG	1 cut(s)	509
PmlI	CACGTG	1 cut(s)	509
PpsI	GAGTC	2 cut(s)	78, 231
Ppu21I	YACGTR	1 cut(s)	509
PshBI	ATTAAT	1 cut(s)	183
Psp124BI	GAGCTC	1 cut(s)	540
PspCI	CACGTG	1 cut(s)	509
PspPI	GGNCC	1 cut(s)	940
PsrI	GAACNNNNNNTAC	2 cut(s)	669, 701
PsuI	RGATCY	3 cut(s)	670, 808, 909
PsyI	GACNNNGTC	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	3 cut(s)	40, 423, 785
RsaNI	GTAC	3 cut(s)	39, 422, 784
RseI	CAYNNNNRTG	1 cut(s)	507
SacI	GAGCTC	1 cut(s)	540
SaqAI	TTAA	3 cut(s)	183, 404, 1089
SatI	GCNGC	7 cut(s)	140, 441, 627, 750, 765, 795, 879
Sau3AI	GATC	9 cut(s)	291, 450, 638, 670, 756, 808, 909, 993, 1051
Sau96I	GGNCC	1 cut(s)	940
ScaI	AGTACT	1 cut(s)	40
SchI	GAGTC	2 cut(s)	79, 232
SduI	GDGCHC	2 cut(s)	540, 668
SfaNI	GCATC	2 cut(s)	403, 707
SfcI	CTRYAG	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	507
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	6 cut(s)	80, 321, 406, 417, 513, 582
SsiI	CCGC	9 cut(s)	11, 67, 86, 103, 139, 142, 158, 197, 541
SspMI	CTAG	4 cut(s)	36, 674, 983, 1108
SstI	GAGCTC	1 cut(s)	540
TaaI	ACNGT	2 cut(s)	216, 1004
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	5 cut(s)	44, 399, 474, 688, 1080
TasI	AATT	6 cut(s)	80, 321, 406, 417, 513, 582
TatI	WGTACW	3 cut(s)	38, 421, 783
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	2 cut(s)	964, 1077
Tru1I	TTAA	3 cut(s)	183, 404, 1089
Tru9I	TTAA	3 cut(s)	183, 404, 1089
TscAI	CASTG	1 cut(s)	759
TseFI	GTSAC	3 cut(s)	238, 561, 1103
TseI	GCWGC	6 cut(s)	440, 626, 749, 764, 794, 878
Tsp45I	GTSAC	3 cut(s)	238, 561, 1103
TspDTI	ATGAA	4 cut(s)	495, 565, 878, 917
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	759
Tth111I	GACNNNGTC	1 cut(s)	49
VspI	ATTAAT	1 cut(s)	183
XapI	RAATTY	2 cut(s)	80, 406
XmiI	GTMKAC	1 cut(s)	1060
XmnI	GAANNNNTTC	1 cut(s)	933
XspI	CTAG	4 cut(s)	36, 674, 983, 1108
ZrmI	AGTACT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.