Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011430

Physical Location & Seq

Genomic Coordinates Reverse (-)

44189680 .. 44190521

Gene Structure 842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00250390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGCTTCCGCTCATATCGCTAGTTACTACTACTAGTACTTCCACGGCGTCGTTTGGCGTAAAGCTCGGGCCGTGCGATTTTCCGAAGACGAGAAAGAGGCGGACGGGTTTGTTTGACGGAGGTATATATGGTGCAATGGCTTTAGCGGGCAGATTTATATGCTCAATGATAGGTATCGATATCGTGGGAGGTTTCGAGTTAAATTTAGATGCAATTGTACAAGGGCTTGGATATGCAGCTCCAAAATTCTATGATATTGGGATTGGGTTTGGTTACAAAAAAGCTTGGAGGAAAGATAACAAGAGAGTAGGTCTCGGGAAAATTTCTGGTCGTAGCCATGGAGGAAGAGAGGGAGAGTGTCAAAGTCGAAAGAGGTACAAGTACAAAATTACCCTCTCGACAAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

137

Amino Acids

14.92

Weight (kDa)

9.97

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35260
fragaria_vesca	FvH4_5g21880
malus_domestica	MD00G1220600.v1.1 MD06G1033000.v1.1
prunus_persica	Prupe.5G038500_v2.0.a1
pyrus_communis	pycom06g02730
rosa_chinensis	RchiOBHm_Chr6g0284251 RchiOBHm_Chr7g0209431
rosa_laevigata	RLG00000003137
rosa_multiflora	Rmu_sc0001861.1_g000004 Rmu_sc0007059.1_g000001 Rmu_sc0015095.1_g000003
rosa_roxburghii	Rroxscaffold_3G00249470 Rroxscaffold_3G00250390
rosa_rugosa	Rorug07G0112500
rosa_samantha	Rh7AG246700 Rh7BG241700 Rh7CG262300 Rh7DG252900
rosa_wichuraiana	Rw7G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	13
AciI	CCGC	3 cut(s)	11, 103, 149
AcsI	RAATTY	3 cut(s)	205, 248, 324
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	4 cut(s)	40, 222, 380, 386
AhlI	ACTAGT	1 cut(s)	35
AluBI	AGCT	4 cut(s)	7, 67, 242, 287
AluI	AGCT	4 cut(s)	7, 67, 242, 287
Alw26I	GTCTC	1 cut(s)	320
Ama87I	CYCGRG	2 cut(s)	68, 317
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	3 cut(s)	205, 248, 324
AspS9I	GGNCC	1 cut(s)	71
AvaI	CYCGRG	2 cut(s)	68, 317
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	251
BceAI	ACGGC	2 cut(s)	58, 63
BcoDI	GTCTC	1 cut(s)	320
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	2 cut(s)	23, 36
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
BmcAI	AGTACT	1 cut(s)	40
BmeT110I	CYCGRG	2 cut(s)	68, 317
BmgT120I	GGNCC	1 cut(s)	71
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	95
BplI	GAGNNNNNCTC	2 cut(s)	300, 332
Bsa29I	ATCGAT	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	45, 340
Bse3DI	GCAATG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	176
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	45, 340
BseJI	GATNNNNATC	1 cut(s)	176
BseMI	GCAATG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	251
BshFI	GGCC	1 cut(s)	73
BshVI	ATCGAT	1 cut(s)	180
BsiHKCI	CYCGRG	2 cut(s)	68, 317
BsmAI	GTCTC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	320
BsoBI	CYCGRG	2 cut(s)	68, 317
Bsp1407I	TGTACA	1 cut(s)	220
Bsp19I	CCATGG	1 cut(s)	340
BspACI	CCGC	3 cut(s)	11, 103, 149
BspANI	GGCC	1 cut(s)	73
BspDI	ATCGAT	1 cut(s)	180
BspTNI	GGTCTC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	144
BsrGI	TGTACA	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	45, 340
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	343
BstACI	GRCGYC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	151
BstDSI	CCRYGG	2 cut(s)	45, 340
BstMAI	GTCTC	1 cut(s)	320
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	95
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	73
BsuTUI	ATCGAT	1 cut(s)	180
BtgI	CCRYGG	2 cut(s)	45, 340
Cac8I	GCNNGC	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	71
ClaI	ATCGAT	1 cut(s)	180
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	4 cut(s)	39, 221, 379, 385
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	8 cut(s)	7, 67, 73, 143, 229, 242, 287, 339
CviKI_1	RGCY	8 cut(s)	7, 67, 73, 143, 229, 242, 287, 339
CviQI	GTAC	4 cut(s)	39, 221, 379, 385
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	320
Eco32I	GATATC	1 cut(s)	184
Eco88I	CYCGRG	2 cut(s)	68, 317
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	1 cut(s)	344
FaiI	YATR	9 cut(s)	17, 128, 130, 132, 161, 163, 237, 255, 342
FatI	CATG	1 cut(s)	340
FauI	CCCGC	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	2 cut(s)	23, 36
GluI	GCNGC	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	73
HgaI	GACGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	344
HindIII	AAGCTT	2 cut(s)	5, 285
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	2 cut(s)	319, 400
Hpy99I	CGWCG	1 cut(s)	55
HpyCH4V	TGCA	3 cut(s)	137, 215, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	1 cut(s)	315
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	23, 36
MaeIII	GTNAC	2 cut(s)	25, 275
MbiI	CCGCTC	1 cut(s)	13
MboII	GAAGA	2 cut(s)	100, 360
MfeI	CAATTG	1 cut(s)	216
MluCI	AATT	5 cut(s)	205, 216, 248, 324, 390
MnlI	CCTC	8 cut(s)	93, 116, 185, 285, 338, 346, 369, 407
MseI	TTAA	1 cut(s)	203
MunI	CAATTG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	19
NcoI	CCATGG	1 cut(s)	340
NlaIII	CATG	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	71
RsaI	GTAC	4 cut(s)	40, 222, 380, 386
RsaNI	GTAC	4 cut(s)	39, 221, 379, 385
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	1 cut(s)	240
Sau96I	GGNCC	1 cut(s)	71
ScaI	AGTACT	1 cut(s)	40
SetI	ASST	9 cut(s)	9, 69, 127, 178, 196, 244, 289, 316, 380
SfaNI	GCATC	1 cut(s)	202
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	5 cut(s)	205, 216, 248, 324, 390
SsiI	CCGC	3 cut(s)	11, 103, 149
SspMI	CTAG	2 cut(s)	23, 36
StyI	CCWWGG	1 cut(s)	340
TaqI	TCGA	4 cut(s)	180, 198, 370, 401
TasI	AATT	5 cut(s)	205, 216, 248, 324, 390
TatI	WGTACW	3 cut(s)	38, 220, 384
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	135
XapI	RAATTY	3 cut(s)	205, 248, 324
XspI	CTAG	2 cut(s)	23, 36
ZrmI	AGTACT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.