transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G32150 AT2G35530 |
| fragaria_vesca | FvH4_5g23200 FvH4_5g23200 |
| malus_domestica | MD06G1026900.v1.1 MD16G1279200.v1.1 |
| prunus_persica | Prupe.5G027000_v2.0.a1 |
| pyrus_communis | pycom06g02210 pycom16g24960 |
| rosa_chinensis | RchiOBHm_Chr7g0212131 |
| rosa_laevigata | RLG00000002925 |
| rosa_multiflora | Rmu_sc0002283.1_g000045 Rmu_sc0013167.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00247090 |
| rosa_rugosa | Rorug07G0131200 Rorug07G0131200 Rorug07G0131300 |
| rosa_samantha | Rh7AG264300 Rh7BG258200 Rh7CG280800 Rh7DG270700 |
| rosa_wichuraiana | Rw7G022550 Rw7G022560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 731 |
| Acc36I | ACCTGC | 1 cut(s) | 731 |
| AccB1I | GGYRCC | 1 cut(s) | 1187 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 848 |
| AccII | CGCG | 2 cut(s) | 871, 1008 |
| AciI | CCGC | 6 cut(s) | 161, 164, 248, 387, 668, 1191 |
| AclWI | GGATC | 1 cut(s) | 613 |
| AcoI | YGGCCR | 1 cut(s) | 880 |
| AcsI | RAATTY | 1 cut(s) | 763 |
| AcuI | CTGAAG | 4 cut(s) | 384, 435, 651, 786 |
| AfaI | GTAC | 3 cut(s) | 290, 688, 717 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 170, 239, 281, 543, 674, 848, 1136 |
| AflII | CTTAAG | 1 cut(s) | 917 |
| AgeI | ACCGGT | 1 cut(s) | 700 |
| AgsI | TTSAA | 5 cut(s) | 303, 469, 567, 1021, 1136 |
| AjnI | CCWGG | 7 cut(s) | 277, 496, 748, 814, 847, 862, 893 |
| AluBI | AGCT | 8 cut(s) | 456, 521, 530, 737, 806, 997, 1060, 1081 |
| AluI | AGCT | 8 cut(s) | 456, 521, 530, 737, 806, 997, 1060, 1081 |
| Alw21I | GWGCWC | 1 cut(s) | 796 |
| Alw26I | GTCTC | 1 cut(s) | 922 |
| AlwI | GGATC | 1 cut(s) | 613 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 848 |
| AoxI | GGCC | 4 cut(s) | 751, 880, 981, 999 |
| ApeKI | GCWGC | 2 cut(s) | 635, 737 |
| ApoI | RAATTY | 1 cut(s) | 763 |
| AsiGI | ACCGGT | 1 cut(s) | 700 |
| AspLEI | GCGC | 1 cut(s) | 1010 |
| AspS9I | GGNCC | 4 cut(s) | 665, 752, 1000, 1108 |
| AsuC2I | CCSGG | 1 cut(s) | 312 |
| AsuHPI | GGTGA | 3 cut(s) | 191, 410, 715 |
| AsuNHI | GCTAGC | 1 cut(s) | 5 |
| AvaII | GGWCC | 2 cut(s) | 665, 1108 |
| BalI | TGGCCA | 1 cut(s) | 882 |
| BanI | GGYRCC | 1 cut(s) | 1187 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 670, 702 |
| Bbv12I | GWGCWC | 1 cut(s) | 796 |
| BbvCI | CCTCAGC | 1 cut(s) | 1011 |
| BbvI | GCAGC | 2 cut(s) | 647, 724 |
| BccI | CCATC | 8 cut(s) | 10, 389, 443, 554, 575, 611, 772, 869 |
| BciT130I | CCWGG | 7 cut(s) | 279, 498, 750, 816, 849, 864, 895 |
| BciVI | GTATCC | 2 cut(s) | 282, 821 |
| BcnI | CCSGG | 1 cut(s) | 312 |
| BcoDI | GTCTC | 1 cut(s) | 922 |
| BfaI | CTAG | 3 cut(s) | 6, 186, 614 |
| BfmI | CTRYAG | 3 cut(s) | 325, 381, 738 |
| BfrI | CTTAAG | 1 cut(s) | 917 |
| BfuAI | ACCTGC | 1 cut(s) | 731 |
| BfuI | GTATCC | 2 cut(s) | 282, 821 |
| BisI | GCNGC | 6 cut(s) | 161, 164, 388, 636, 738, 1191 |
| BlsI | GCNGC | 6 cut(s) | 162, 165, 389, 637, 739, 1192 |
| Bme1390I | CCNGG | 8 cut(s) | 279, 312, 498, 750, 816, 849, 864, 895 |
| Bme18I | GGWCC | 2 cut(s) | 665, 1108 |
| BmgT120I | GGNCC | 4 cut(s) | 665, 752, 1000, 1108 |
| BmiI | GGNNCC | 3 cut(s) | 42, 90, 1189 |
| BmrFI | CCNGG | 8 cut(s) | 279, 312, 498, 750, 816, 849, 864, 895 |
| BmrI | ACTGGG | 1 cut(s) | 796 |
| BmsI | GCATC | 6 cut(s) | 191, 219, 391, 524, 616, 647 |
| BmtI | GCTAGC | 1 cut(s) | 9 |
| BmuI | ACTGGG | 1 cut(s) | 796 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1082, 1114 |
| BpmI | CTGGAG | 3 cut(s) | 108, 846, 870 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1011 |
| BpuEI | CTTGAG | 1 cut(s) | 1088 |
| BpuMI | CCSGG | 1 cut(s) | 312 |
| BsaJI | CCNNGG | 4 cut(s) | 277, 497, 814, 893 |
| BsaWI | WCCGGW | 1 cut(s) | 700 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 40, 58, 70, 88 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 170, 239, 281, 543, 674, 848, 1136 |
| Bse118I | RCCGGY | 1 cut(s) | 700 |
| Bse1I | ACTGG | 2 cut(s) | 791, 842 |
| Bse3DI | GCAATG | 2 cut(s) | 16, 273 |
| BseBI | CCWGG | 7 cut(s) | 279, 498, 750, 816, 849, 864, 895 |
| BseDI | CCNNGG | 4 cut(s) | 277, 497, 814, 893 |
| BseGI | GGATG | 4 cut(s) | 253, 295, 631, 783 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 170, 239, 281, 543, 674, 848, 1136 |
| BseMI | GCAATG | 2 cut(s) | 16, 273 |
| BseMII | CTCAG | 3 cut(s) | 522, 1002, 1054 |
| BseNI | ACTGG | 2 cut(s) | 791, 842 |
| BseRI | GAGGAG | 1 cut(s) | 45 |
| BseXI | GCAGC | 2 cut(s) | 647, 724 |
| Bsh1236I | CGCG | 2 cut(s) | 871, 1008 |
| BshFI | GGCC | 4 cut(s) | 753, 882, 983, 1001 |
| BshNI | GGYRCC | 1 cut(s) | 1187 |
| BshTI | ACCGGT | 1 cut(s) | 700 |
| BsiHKAI | GWGCWC | 1 cut(s) | 796 |
| BsiSI | CCGG | 2 cut(s) | 311, 701 |
| BslFI | GGGAC | 1 cut(s) | 174 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 170, 239, 281, 543, 674, 848, 1136 |
| BsmAI | GTCTC | 1 cut(s) | 922 |
| BsmBI | CGTCTC | 1 cut(s) | 922 |
| BsmFI | GGGAC | 1 cut(s) | 174 |
| BsmI | GAATGC | 1 cut(s) | 825 |
| BsnI | GGCC | 4 cut(s) | 753, 882, 983, 1001 |
| Bsp1286I | GDGCHC | 1 cut(s) | 796 |
| Bsp143I | GATC | 3 cut(s) | 443, 605, 962 |
| Bsp68I | TCGCGA | 1 cut(s) | 871 |
| BspACI | CCGC | 6 cut(s) | 161, 164, 248, 387, 668, 1191 |
| BspANI | GGCC | 4 cut(s) | 753, 882, 983, 1001 |
| BspCNI | CTCAG | 3 cut(s) | 521, 1003, 1053 |
| BspFNI | CGCG | 2 cut(s) | 871, 1008 |
| BspLI | GGNNCC | 3 cut(s) | 42, 90, 1189 |
| BspMAI | CTGCAG | 1 cut(s) | 742 |
| BspMI | ACCTGC | 1 cut(s) | 731 |
| BspOI | GCTAGC | 1 cut(s) | 9 |
| BspPI | GGATC | 1 cut(s) | 613 |
| BspQI | GCTCTTC | 1 cut(s) | 1071 |
| BspT107I | GGYRCC | 1 cut(s) | 1187 |
| BspTI | CTTAAG | 1 cut(s) | 917 |
| BsrDI | GCAATG | 2 cut(s) | 16, 273 |
| BsrFI | RCCGGY | 1 cut(s) | 700 |
| BsrI | ACTGG | 2 cut(s) | 791, 842 |
| BssAI | RCCGGY | 1 cut(s) | 700 |
| BssECI | CCNNGG | 4 cut(s) | 277, 497, 814, 893 |
| BssMI | GATC | 3 cut(s) | 443, 605, 962 |
| Bst2UI | CCWGG | 7 cut(s) | 279, 498, 750, 816, 849, 864, 895 |
| Bst4CI | ACNGT | 1 cut(s) | 715 |
| Bst6I | CTCTTC | 2 cut(s) | 85, 1071 |
| BstAFI | CTTAAG | 1 cut(s) | 917 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 229 |
| BstC8I | GCNNGC | 4 cut(s) | 7, 112, 869, 999 |
| BstDEI | CTNAG | 3 cut(s) | 508, 1011, 1040 |
| BstF5I | GGATG | 4 cut(s) | 253, 295, 631, 783 |
| BstFNI | CGCG | 2 cut(s) | 871, 1008 |
| BstHHI | GCGC | 1 cut(s) | 1010 |
| BstKTI | GATC | 3 cut(s) | 446, 608, 965 |
| BstMAI | GTCTC | 1 cut(s) | 922 |
| BstMBI | GATC | 3 cut(s) | 443, 605, 962 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 107, 116, 229, 527, 635, 1007 |
| BstNI | CCWGG | 7 cut(s) | 279, 498, 750, 816, 849, 864, 895 |
| BstNSI | RCATGY | 1 cut(s) | 289 |
| BstSCI | CCNGG | 8 cut(s) | 277, 310, 496, 748, 814, 847, 862, 893 |
| BstSFI | CTRYAG | 3 cut(s) | 325, 381, 738 |
| BstUI | CGCG | 2 cut(s) | 871, 1008 |
| BstV1I | GCAGC | 2 cut(s) | 647, 724 |
| BstX2I | RGATCY | 1 cut(s) | 605 |
| BstYI | RGATCY | 1 cut(s) | 605 |
| BsuI | GTATCC | 2 cut(s) | 282, 821 |
| BsuRI | GGCC | 4 cut(s) | 753, 882, 983, 1001 |
| BtsCI | GGATG | 4 cut(s) | 253, 295, 631, 783 |
| BtsIMutI | CAGTG | 1 cut(s) | 390 |
| BtuMI | TCGCGA | 1 cut(s) | 871 |
| BveI | ACCTGC | 1 cut(s) | 731 |
| Cac8I | GCNNGC | 4 cut(s) | 7, 112, 869, 999 |
| CaiI | CAGNNNCTG | 1 cut(s) | 848 |
| CfoI | GCGC | 1 cut(s) | 1010 |
| Cfr10I | RCCGGY | 1 cut(s) | 700 |
| Cfr13I | GGNCC | 4 cut(s) | 665, 752, 1000, 1108 |
| Csp6I | GTAC | 3 cut(s) | 289, 687, 716 |
| CspAI | ACCGGT | 1 cut(s) | 700 |
| CviAII | CATG | 7 cut(s) | 115, 170, 286, 472, 724, 824, 1147 |
| CviQI | GTAC | 3 cut(s) | 289, 687, 716 |
| DdeI | CTNAG | 3 cut(s) | 508, 1011, 1040 |
| DpnI | GATC | 3 cut(s) | 445, 607, 964 |
| DpnII | GATC | 3 cut(s) | 443, 605, 962 |
| DraI | TTTAAA | 1 cut(s) | 768 |
| EaeI | YGGCCR | 1 cut(s) | 880 |
| Eam1104I | CTCTTC | 2 cut(s) | 85, 1071 |
| EarI | CTCTTC | 2 cut(s) | 85, 1071 |
| EciI | GGCGGA | 1 cut(s) | 237 |
| Eco47I | GGWCC | 2 cut(s) | 665, 1108 |
| Eco57I | CTGAAG | 4 cut(s) | 384, 435, 651, 786 |
| EcoRII | CCWGG | 7 cut(s) | 277, 496, 748, 814, 847, 862, 893 |
| EcoT22I | ATGCAT | 1 cut(s) | 825 |
| Esp3I | CGTCTC | 1 cut(s) | 922 |
| FaeI | CATG | 7 cut(s) | 118, 173, 289, 475, 727, 827, 1150 |
| FaqI | GGGAC | 1 cut(s) | 174 |
| FatI | CATG | 7 cut(s) | 114, 169, 285, 471, 723, 823, 1146 |
| FauNDI | CATATG | 1 cut(s) | 225 |
| Fnu4HI | GCNGC | 6 cut(s) | 161, 164, 388, 636, 738, 1191 |
| FokI | GGATG | 4 cut(s) | 240, 282, 638, 790 |
| Fsp4HI | GCNGC | 6 cut(s) | 161, 164, 388, 636, 738, 1191 |
| FspBI | CTAG | 3 cut(s) | 6, 186, 614 |
| GlaI | GCGC | 1 cut(s) | 1009 |
| GluI | GCNGC | 6 cut(s) | 161, 164, 388, 636, 738, 1191 |
| GsuI | CTGGAG | 3 cut(s) | 108, 846, 870 |
| HaeIII | GGCC | 4 cut(s) | 753, 882, 983, 1001 |
| HapII | CCGG | 2 cut(s) | 311, 701 |
| HhaI | GCGC | 1 cut(s) | 1010 |
| Hin1II | CATG | 7 cut(s) | 118, 173, 289, 475, 727, 827, 1150 |
| Hin6I | GCGC | 1 cut(s) | 1008 |
| HinP1I | GCGC | 1 cut(s) | 1008 |
| HindIII | AAGCTT | 1 cut(s) | 454 |
| HinfI | GANTC | 4 cut(s) | 599, 950, 1208, 1220 |
| HpaII | CCGG | 2 cut(s) | 311, 701 |
| HphI | GGTGA | 3 cut(s) | 191, 410, 715 |
| Hpy166II | GTNNAC | 2 cut(s) | 689, 977 |
| Hpy188I | TCNGA | 4 cut(s) | 415, 559, 643, 1043 |
| Hpy188III | TCNNGA | 6 cut(s) | 125, 447, 510, 603, 609, 870 |
| Hpy8I | GTNNAC | 2 cut(s) | 689, 977 |
| HpyAV | CCTTC | 8 cut(s) | 31, 69, 102, 309, 354, 415, 566, 1130 |
| HpyCH4III | ACNGT | 1 cut(s) | 715 |
| HpyCH4IV | ACGT | 1 cut(s) | 1226 |
| HpyCH4V | TGCA | 3 cut(s) | 266, 740, 823 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 107, 116, 229, 527, 635, 1007 |
| HpyF3I | CTNAG | 3 cut(s) | 508, 1011, 1040 |
| HpySE526I | ACGT | 1 cut(s) | 1226 |
| Hsp92II | CATG | 7 cut(s) | 118, 173, 289, 475, 727, 827, 1150 |
| HspAI | GCGC | 1 cut(s) | 1008 |
| Kzo9I | GATC | 3 cut(s) | 443, 605, 962 |
| LguI | GCTCTTC | 1 cut(s) | 1071 |
| LmnI | GCTCC | 4 cut(s) | 512, 527, 799, 865 |
| Lsp1109I | GCAGC | 2 cut(s) | 647, 724 |
| LweI | GCATC | 6 cut(s) | 191, 219, 391, 524, 616, 647 |
| MaeI | CTAG | 3 cut(s) | 6, 186, 614 |
| MaeII | ACGT | 1 cut(s) | 1226 |
| MaeIII | GTNAC | 1 cut(s) | 897 |
| MalI | GATC | 3 cut(s) | 445, 607, 964 |
| MboI | GATC | 3 cut(s) | 443, 605, 962 |
| MboII | GAAGA | 5 cut(s) | 54, 72, 972, 1037, 1088 |
| MflI | RGATCY | 1 cut(s) | 605 |
| MhlI | GDGCHC | 1 cut(s) | 796 |
| MlsI | TGGCCA | 1 cut(s) | 882 |
| MluCI | AATT | 2 cut(s) | 428, 763 |
| MluNI | TGGCCA | 1 cut(s) | 882 |
| MlyI | GAGTC | 2 cut(s) | 959, 1214 |
| MmeI | TCCRAC | 1 cut(s) | 821 |
| Mox20I | TGGCCA | 1 cut(s) | 882 |
| Mph1103I | ATGCAT | 1 cut(s) | 825 |
| MscI | TGGCCA | 1 cut(s) | 882 |
| MseI | TTAA | 2 cut(s) | 767, 918 |
| MslI | CAYNNNNRTG | 4 cut(s) | 174, 258, 728, 1145 |
| Msp20I | TGGCCA | 1 cut(s) | 882 |
| MspA1I | CMGCKG | 2 cut(s) | 737, 806 |
| MspCI | CTTAAG | 1 cut(s) | 917 |
| MspI | CCGG | 2 cut(s) | 311, 701 |
| MspR9I | CCNGG | 8 cut(s) | 279, 312, 498, 750, 816, 849, 864, 895 |
| Mva1269I | GAATGC | 1 cut(s) | 825 |
| MvaI | CCWGG | 7 cut(s) | 279, 498, 750, 816, 849, 864, 895 |
| MvnI | CGCG | 2 cut(s) | 871, 1008 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 107, 116, 229, 527, 635, 1007 |
| NciI | CCSGG | 1 cut(s) | 312 |
| NdeI | CATATG | 1 cut(s) | 225 |
| NdeII | GATC | 3 cut(s) | 443, 605, 962 |
| NheI | GCTAGC | 1 cut(s) | 5 |
| NlaIII | CATG | 7 cut(s) | 118, 173, 289, 475, 727, 827, 1150 |
| NlaIV | GGNNCC | 3 cut(s) | 42, 90, 1189 |
| NruI | TCGCGA | 1 cut(s) | 871 |
| NsiI | ATGCAT | 1 cut(s) | 825 |
| NspI | RCATGY | 1 cut(s) | 289 |
| PaqCI | CACCTGC | 1 cut(s) | 731 |
| PciSI | GCTCTTC | 1 cut(s) | 1071 |
| PctI | GAATGC | 1 cut(s) | 825 |
| PfeI | GAWTC | 2 cut(s) | 599, 1208 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 848 |
| PfoI | TCCNGGA | 1 cut(s) | 847 |
| PinAI | ACCGGT | 1 cut(s) | 700 |
| PkrI | GCNGC | 6 cut(s) | 162, 165, 389, 637, 739, 1192 |
| PleI | GAGTC | 2 cut(s) | 958, 1214 |
| PpsI | GAGTC | 2 cut(s) | 958, 1214 |
| Psp6I | CCWGG | 7 cut(s) | 277, 496, 748, 814, 847, 862, 893 |
| PspGI | CCWGG | 7 cut(s) | 277, 496, 748, 814, 847, 862, 893 |
| PspN4I | GGNNCC | 3 cut(s) | 42, 90, 1189 |
| PspPI | GGNCC | 4 cut(s) | 665, 752, 1000, 1108 |
| PstI | CTGCAG | 1 cut(s) | 742 |
| PstNI | CAGNNNCTG | 1 cut(s) | 848 |
| PsuI | RGATCY | 1 cut(s) | 605 |
| PvuII | CAGCTG | 2 cut(s) | 737, 806 |
| RruI | TCGCGA | 1 cut(s) | 871 |
| RsaI | GTAC | 3 cut(s) | 290, 688, 717 |
| RsaNI | GTAC | 3 cut(s) | 289, 687, 716 |
| RseI | CAYNNNNRTG | 4 cut(s) | 174, 258, 728, 1145 |
| SapI | GCTCTTC | 1 cut(s) | 1071 |
| SaqAI | TTAA | 2 cut(s) | 767, 918 |
| SatI | GCNGC | 6 cut(s) | 161, 164, 388, 636, 738, 1191 |
| Sau3AI | GATC | 3 cut(s) | 443, 605, 962 |
| Sau96I | GGNCC | 4 cut(s) | 665, 752, 1000, 1108 |
| SchI | GAGTC | 2 cut(s) | 959, 1214 |
| ScrFI | CCNGG | 8 cut(s) | 279, 312, 498, 750, 816, 849, 864, 895 |
| SduI | GDGCHC | 1 cut(s) | 796 |
| SfaNI | GCATC | 6 cut(s) | 191, 219, 391, 524, 616, 647 |
| SfcI | CTRYAG | 3 cut(s) | 325, 381, 738 |
| SinI | GGWCC | 2 cut(s) | 665, 1108 |
| SmiI | ATTTAAAT | 1 cut(s) | 768 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 174, 258, 728, 1145 |
| SmlI | CTYRAG | 2 cut(s) | 917, 1103 |
| SmoI | CTYRAG | 2 cut(s) | 917, 1103 |
| Sse9I | AATT | 2 cut(s) | 428, 763 |
| SsiI | CCGC | 6 cut(s) | 161, 164, 248, 387, 668, 1191 |
| SspI | AATATT | 1 cut(s) | 772 |
| SspMI | CTAG | 3 cut(s) | 6, 186, 614 |
| StyD4I | CCNGG | 8 cut(s) | 277, 310, 496, 748, 814, 847, 862, 893 |
| SwaI | ATTTAAAT | 1 cut(s) | 768 |
| TaaI | ACNGT | 1 cut(s) | 715 |
| TaiI | ACGT | 1 cut(s) | 1229 |
| TaqI | TCGA | 2 cut(s) | 26, 958 |
| TasI | AATT | 2 cut(s) | 428, 763 |
| TauI | GCSGC | 4 cut(s) | 163, 166, 390, 1193 |
| TfiI | GAWTC | 2 cut(s) | 599, 1208 |
| Tru1I | TTAA | 2 cut(s) | 767, 918 |
| Tru9I | TTAA | 2 cut(s) | 767, 918 |
| TscAI | CASTG | 1 cut(s) | 397 |
| TseI | GCWGC | 2 cut(s) | 635, 737 |
| TspDTI | ATGAA | 4 cut(s) | 84, 507, 1107, 1200 |
| TspGWI | ACGGA | 1 cut(s) | 946 |
| TspRI | CASTG | 1 cut(s) | 397 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 848 |
| Vha464I | CTTAAG | 1 cut(s) | 917 |
| VpaK11BI | GGWCC | 2 cut(s) | 665, 1108 |
| XapI | RAATTY | 1 cut(s) | 763 |
| XceI | RCATGY | 1 cut(s) | 289 |
| XspI | CTAG | 3 cut(s) | 6, 186, 614 |
| Zsp2I | ATGCAT | 1 cut(s) | 825 |