Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008553

Physical Location & Seq

Genomic Coordinates Reverse (-)

28457138 .. 28464464

Gene Structure 7327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG280800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGGTAGCAGCGAGATGGATAAACCAGCTAAAGAGAAAGAGAAGGAGTTGAAGACGACGCCTCCTACTACTCAGGAGCAGCAGTCTGCTACCACTAGCGCTGGCACTGTTAATCCTGATTGGTCCGGATTTCAGGCATATTCTCCTATGCCTCCACATGGGTTTATGGCATCAAGTCCCCAAGCTCACCCTCACCCATATATGTGGGGCGTTCAGCATATTATGCCTCCATATGGTACTCCTCCACACCCATATGTTGCAATGTATCCCCATGGTGGCTTATATGCTCATCCATCTATGCCTCCGGGATCTTACCCTTTCAGCCCTTTTGCTATGCCCTCGCCAAATGGGATCGTAGAGGCTTCTGGTAACACACCTGGCAGCATAGAAGCAGATGGTAAGCCATCTGAGGCAAAGGAAAAGTTACCGATCAAAAGATCAAAAGGAAGCCTGGGCAGCTTAAACATGATTACCGGAAAGAATAATGAGCTTCCTAAAACATCAGGAGCCTCGGCTAATGGAGTTTATTCTAAGAGTGCTGAGAGTGGTAGTGAAGGCACAAGTGAAGGAAGCGATGCAAATTCTCAGAGTGACTCACAACTGAAGTCAGGAGGAAGGGGAGATTCTTTGGAAGGTGATGCATCTCAGAATGGTGGTTCTGCACATAATTCTCAAAATGGAACACCAAATTCTCACGCAGTGTTGAACCCCACAATGGCAATTGTGCCAATGACAGCTGGTGGTGCTCCCATTGCCGTTTCTGGTCCTGCAACAAACCTAAATATTGGGATGGACTATTGGGGTGCCCCATCTTCTGCCATGCCTGCAATCCGTGGGAAGGTTCCCGCTACTCCAGTTGCTGGAGGACTAGTTACTCCAGGATCTCGGGATGGTGCTCAATCACAGCTTTGGTTACAAGTTAGTCTACTTCCCTGTATTTCATATTCAATTTGTTTGCTTCCTTATTACAGTTTTTCTGGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

328

Amino Acids

33.86

Weight (kDa)

6.12

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR	PF07777	1 - 101	1.5e-28	G-box binding protein MFMR
MFMR_assoc	PF16596	140 - 273	7.3e-53	Disordered region downstream of MFMR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32150 AT2G35530
fragaria_vesca	FvH4_5g23200 FvH4_5g23200
malus_domestica	MD06G1026900.v1.1 MD16G1279200.v1.1
prunus_persica	Prupe.5G027000_v2.0.a1
pyrus_communis	pycom06g02210 pycom16g24960
rosa_chinensis	RchiOBHm_Chr7g0212131
rosa_laevigata	RLG00000002925
rosa_multiflora	Rmu_sc0002283.1_g000045 Rmu_sc0013167.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247090
rosa_rugosa	Rorug07G0131200 Rorug07G0131200 Rorug07G0131300
rosa_samantha	Rh7AG264300 Rh7BG258200 Rh7CG280800 Rh7DG270700
rosa_wichuraiana	Rw7G022550 Rw7G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	803
AccB7I	CCANNNNNTGG	1 cut(s)	860
AccI	GTMKAC	1 cut(s)	925
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	1 cut(s)	846
AclWI	GGATC	3 cut(s)	316, 359, 889
AcsI	RAATTY	2 cut(s)	580, 688
AcuI	CTGAAG	1 cut(s)	623
AcyI	GRCGYC	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	700
AfaI	GTAC	1 cut(s)	238
AfeI	AGCGCT	1 cut(s)	100
AfiI	CCNNNNNNNGG	6 cut(s)	158, 233, 275, 715, 838, 860
AgsI	TTSAA	3 cut(s)	52, 706, 948
AhlI	ACTAGT	1 cut(s)	868
AjnI	CCWGG	3 cut(s)	376, 450, 877
AluBI	AGCT	6 cut(s)	29, 185, 459, 490, 737, 907
AluI	AGCT	6 cut(s)	29, 185, 459, 490, 737, 907
Alw21I	GWGCWC	2 cut(s)	748, 898
AlwI	GGATC	3 cut(s)	316, 359, 889
AlwNI	CAGNNNCTG	1 cut(s)	860
Ama87I	CYCGRG	1 cut(s)	885
Aor13HI	TCCGGA	1 cut(s)	125
Aor51HI	AGCGCT	1 cut(s)	100
AoxI	GGCC	1 cut(s)	979
ApeKI	GCWGC	4 cut(s)	9, 79, 381, 456
ApoI	RAATTY	2 cut(s)	580, 688
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	123, 764
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	3 cut(s)	179, 185, 647
AvaI	CYCGRG	1 cut(s)	885
AvaII	GGWCC	2 cut(s)	123, 764
BaeGI	GKGCMC	1 cut(s)	808
BanI	GGYRCC	1 cut(s)	803
BbsI	GAAGAC	1 cut(s)	59
Bbv12I	GWGCWC	2 cut(s)	748, 898
BbvI	GCAGC	4 cut(s)	21, 91, 393, 468
BccI	CCATC	7 cut(s)	10, 301, 389, 412, 784, 817, 884
BceAI	ACGGC	1 cut(s)	740
BciT130I	CCWGG	3 cut(s)	378, 452, 879
BciVI	GTATCC	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	306
BcuI	ACTAGT	1 cut(s)	868
BfaI	CTAG	2 cut(s)	96, 869
BfoI	RGCGCY	1 cut(s)	102
BfuI	GTATCC	1 cut(s)	276
BisI	GCNGC	4 cut(s)	10, 80, 382, 457
BlsI	GCNGC	4 cut(s)	11, 81, 383, 458
Bme1390I	CCNGG	4 cut(s)	306, 378, 452, 879
Bme18I	GGWCC	2 cut(s)	123, 764
BmeT110I	CYCGRG	1 cut(s)	885
BmgT120I	GGNCC	2 cut(s)	123, 764
BmiI	GGNNCC	3 cut(s)	508, 805, 843
BmrFI	CCNGG	4 cut(s)	306, 378, 452, 879
BmsI	GCATC	4 cut(s)	179, 565, 628, 650
BpiI	GAAGAC	1 cut(s)	59
BpmI	CTGGAG	3 cut(s)	837, 861, 882
BpuMI	CCSGG	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	4 cut(s)	271, 451, 510, 832
BsaWI	WCCGGW	2 cut(s)	125, 473
BsaXI	ACNNNNNCTCC	6 cut(s)	46, 68, 76, 98, 855, 885
Bsc4I	CCNNNNNNNGG	6 cut(s)	158, 233, 275, 715, 838, 860
Bse1I	ACTGG	1 cut(s)	854
Bse3DI	GCAATG	2 cut(s)	267, 750
BseAI	TCCGGA	1 cut(s)	125
BseBI	CCWGG	3 cut(s)	378, 452, 879
BseDI	CCNNGG	4 cut(s)	271, 451, 510, 832
BseGI	GGATG	3 cut(s)	289, 795, 895
BseLI	CCNNNNNNNGG	6 cut(s)	158, 233, 275, 715, 838, 860
BseMI	GCAATG	2 cut(s)	267, 750
BseMII	CTCAG	5 cut(s)	86, 399, 531, 599, 659
BseNI	ACTGG	1 cut(s)	854
BseRI	GAGGAG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	808
BseXI	GCAGC	4 cut(s)	21, 91, 393, 468
BsgI	GTGCAG	1 cut(s)	645
BshFI	GGCC	1 cut(s)	981
BshNI	GGYRCC	1 cut(s)	803
BsiHKAI	GWGCWC	2 cut(s)	748, 898
BsiHKCI	CYCGRG	1 cut(s)	885
BsiSI	CCGG	3 cut(s)	126, 305, 474
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	6 cut(s)	158, 233, 275, 715, 838, 860
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	981
BsoBI	CYCGRG	1 cut(s)	885
Bsp1286I	GDGCHC	3 cut(s)	748, 808, 898
Bsp13I	TCCGGA	1 cut(s)	125
Bsp143I	GATC	5 cut(s)	308, 351, 429, 437, 881
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	1 cut(s)	846
BspANI	GGCC	1 cut(s)	981
BspCNI	CTCAG	5 cut(s)	85, 400, 532, 598, 658
BspEI	TCCGGA	1 cut(s)	125
BspLI	GGNNCC	3 cut(s)	508, 805, 843
BspPI	GGATC	3 cut(s)	316, 359, 889
BspT107I	GGYRCC	1 cut(s)	803
BsrDI	GCAATG	2 cut(s)	267, 750
BsrI	ACTGG	1 cut(s)	854
BssECI	CCNNGG	4 cut(s)	271, 451, 510, 832
BssMI	GATC	5 cut(s)	308, 351, 429, 437, 881
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	3 cut(s)	378, 452, 879
Bst4CI	ACNGT	2 cut(s)	109, 971
BstACI	GRCGYC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	103, 825
BstDEI	CTNAG	6 cut(s)	72, 408, 531, 540, 585, 645
BstDSI	CCRYGG	2 cut(s)	271, 832
BstF5I	GGATG	3 cut(s)	289, 795, 895
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	5 cut(s)	311, 354, 432, 440, 884
BstMBI	GATC	5 cut(s)	308, 351, 429, 437, 881
BstMWI	GCNNNNNNNGC	5 cut(s)	223, 456, 743, 752, 824
BstNI	CCWGG	3 cut(s)	378, 452, 879
BstSCI	CCNGG	4 cut(s)	304, 376, 450, 877
BstSLI	GKGCMC	1 cut(s)	808
BstV1I	GCAGC	4 cut(s)	21, 91, 393, 468
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	2 cut(s)	308, 881
BstXI	CCANNNNNNTGG	1 cut(s)	204
BstYI	RGATCY	2 cut(s)	308, 881
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	981
BtgI	CCRYGG	2 cut(s)	271, 832
BtgZI	GCGATG	1 cut(s)	588
BtsCI	GGATG	3 cut(s)	289, 795, 895
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	2 cut(s)	105, 705
Cac8I	GCNNGC	2 cut(s)	103, 825
CaiI	CAGNNNCTG	1 cut(s)	860
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	123, 764
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	4 cut(s)	158, 272, 466, 820
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	6 cut(s)	72, 408, 531, 540, 585, 645
DpnI	GATC	5 cut(s)	310, 353, 431, 439, 883
DpnII	GATC	5 cut(s)	308, 351, 429, 437, 881
DraIII	CACNNNGTG	1 cut(s)	700
Eco130I	CCWWGG	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	123, 764
Eco47III	AGCGCT	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	623
Eco88I	CYCGRG	1 cut(s)	885
EcoRII	CCWGG	3 cut(s)	376, 450, 877
EcoT14I	CCWWGG	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	4 cut(s)	161, 275, 469, 823
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	4 cut(s)	157, 271, 465, 819
FauI	CCCGC	1 cut(s)	853
FauNDI	CATATG	2 cut(s)	232, 253
FblI	GTMKAC	1 cut(s)	925
Fnu4HI	GCNGC	4 cut(s)	10, 80, 382, 457
FokI	GGATG	3 cut(s)	276, 802, 902
Fsp4HI	GCNGC	4 cut(s)	10, 80, 382, 457
FspBI	CTAG	2 cut(s)	96, 869
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	4 cut(s)	10, 80, 382, 457
GsuI	CTGGAG	3 cut(s)	837, 861, 882
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	981
HapII	CCGG	3 cut(s)	126, 305, 474
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	161, 275, 469, 823
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HinfI	GANTC	2 cut(s)	593, 623
HpaII	CCGG	3 cut(s)	126, 305, 474
HphI	GGTGA	3 cut(s)	179, 185, 647
Hpy166II	GTNNAC	1 cut(s)	926
Hpy188I	TCNGA	4 cut(s)	409, 588, 648, 986
Hpy188III	TCNNGA	6 cut(s)	74, 116, 126, 504, 609, 887
Hpy8I	GTNNAC	1 cut(s)	926
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	6 cut(s)	37, 548, 560, 609, 626, 832
HpyCH4III	ACNGT	2 cut(s)	109, 971
HpyCH4V	TGCA	6 cut(s)	260, 578, 641, 662, 770, 827
HpyF10VI	GCNNNNNNNGC	5 cut(s)	223, 456, 743, 752, 824
HpyF3I	CTNAG	6 cut(s)	72, 408, 531, 540, 585, 645
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	4 cut(s)	161, 275, 469, 823
HspAI	GCGC	1 cut(s)	99
Kpn2I	TCCGGA	1 cut(s)	125
Kzo9I	GATC	5 cut(s)	308, 351, 429, 437, 881
LmnI	GCTCC	3 cut(s)	76, 506, 751
Lsp1109I	GCAGC	4 cut(s)	21, 91, 393, 468
LweI	GCATC	4 cut(s)	179, 565, 628, 650
MaeI	CTAG	2 cut(s)	96, 869
MaeIII	GTNAC	5 cut(s)	368, 423, 590, 871, 912
MalI	GATC	5 cut(s)	310, 353, 431, 439, 883
MboI	GATC	5 cut(s)	308, 351, 429, 437, 881
MboII	GAAGA	2 cut(s)	64, 804
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	2 cut(s)	308, 881
MhlI	GDGCHC	3 cut(s)	748, 808, 898
MluCI	AATT	5 cut(s)	580, 667, 688, 720, 948
MlyI	GAGTC	1 cut(s)	587
Mph1103I	ATGCAT	1 cut(s)	643
MroI	TCCGGA	1 cut(s)	125
MseI	TTAA	2 cut(s)	111, 461
MslI	CAYNNNNRTG	2 cut(s)	202, 252
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	3 cut(s)	126, 305, 474
MspR9I	CCNGG	4 cut(s)	306, 378, 452, 879
MunI	CAATTG	1 cut(s)	720
MvaI	CCWGG	3 cut(s)	378, 452, 879
MwoI	GCNNNNNNNGC	5 cut(s)	223, 456, 743, 752, 824
NciI	CCSGG	1 cut(s)	306
NcoI	CCATGG	1 cut(s)	271
NdeI	CATATG	2 cut(s)	232, 253
NdeII	GATC	5 cut(s)	308, 351, 429, 437, 881
NlaIII	CATG	4 cut(s)	161, 275, 469, 823
NlaIV	GGNNCC	3 cut(s)	508, 805, 843
NmeAIII	GCCGAG	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	590
NsiI	ATGCAT	1 cut(s)	643
PfeI	GAWTC	1 cut(s)	623
PflMI	CCANNNNNTGG	1 cut(s)	860
PfoI	TCCNGGA	2 cut(s)	304, 877
PkrI	GCNGC	4 cut(s)	11, 81, 383, 458
PleI	GAGTC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	587
Psp6I	CCWGG	3 cut(s)	376, 450, 877
PspGI	CCWGG	3 cut(s)	376, 450, 877
PspN4I	GGNNCC	3 cut(s)	508, 805, 843
PspPI	GGNCC	2 cut(s)	123, 764
PstNI	CAGNNNCTG	1 cut(s)	860
PsuI	RGATCY	2 cut(s)	308, 881
PvuII	CAGCTG	1 cut(s)	737
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
RseI	CAYNNNNRTG	2 cut(s)	202, 252
SaqAI	TTAA	2 cut(s)	111, 461
SatI	GCNGC	4 cut(s)	10, 80, 382, 457
Sau3AI	GATC	5 cut(s)	308, 351, 429, 437, 881
Sau96I	GGNCC	2 cut(s)	123, 764
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	4 cut(s)	306, 378, 452, 879
SduI	GDGCHC	3 cut(s)	748, 808, 898
SfaNI	GCATC	4 cut(s)	179, 565, 628, 650
SinI	GGWCC	2 cut(s)	123, 764
SmiMI	CAYNNNNRTG	2 cut(s)	202, 252
SpeI	ACTAGT	1 cut(s)	868
Sse9I	AATT	5 cut(s)	580, 667, 688, 720, 948
SsiI	CCGC	1 cut(s)	846
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	2 cut(s)	96, 869
StyD4I	CCNGG	4 cut(s)	304, 376, 450, 877
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	109, 971
TasI	AATT	5 cut(s)	580, 667, 688, 720, 948
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	2 cut(s)	111, 461
Tru9I	TTAA	2 cut(s)	111, 461
TscAI	CASTG	2 cut(s)	112, 705
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	4 cut(s)	9, 79, 381, 456
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	1 cut(s)	930
TspGWI	ACGGA	1 cut(s)	821
TspRI	CASTG	2 cut(s)	112, 705
Van91I	CCANNNNNTGG	1 cut(s)	860
VpaK11BI	GGWCC	2 cut(s)	123, 764
XapI	RAATTY	2 cut(s)	580, 688
XmiI	GTMKAC	1 cut(s)	925
XspI	CTAG	2 cut(s)	96, 869
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.