transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G32150 AT2G35530 |
| fragaria_vesca | FvH4_5g23200 FvH4_5g23200 |
| malus_domestica | MD06G1026900.v1.1 MD16G1279200.v1.1 |
| prunus_persica | Prupe.5G027000_v2.0.a1 |
| pyrus_communis | pycom06g02210 pycom16g24960 |
| rosa_chinensis | RchiOBHm_Chr7g0212131 |
| rosa_laevigata | RLG00000002925 |
| rosa_multiflora | Rmu_sc0002283.1_g000045 Rmu_sc0013167.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00247090 |
| rosa_rugosa | Rorug07G0131200 Rorug07G0131200 Rorug07G0131300 |
| rosa_samantha | Rh7AG264300 Rh7BG258200 Rh7CG280800 Rh7DG270700 |
| rosa_wichuraiana | Rw7G022550 Rw7G022560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 989 |
| Acc65I | GGTACC | 1 cut(s) | 841 |
| AccB1I | GGYRCC | 3 cut(s) | 506, 803, 841 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 860 |
| AccIII | TCCGGA | 1 cut(s) | 125 |
| AciI | CCGC | 3 cut(s) | 846, 943, 1072 |
| AclWI | GGATC | 3 cut(s) | 316, 359, 889 |
| AcsI | RAATTY | 3 cut(s) | 580, 688, 1137 |
| AcuI | CTGAAG | 3 cut(s) | 623, 1047, 1139 |
| AcyI | GRCGYC | 1 cut(s) | 59 |
| AdeI | CACNNNGTG | 1 cut(s) | 700 |
| AfaI | GTAC | 2 cut(s) | 238, 843 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 158, 233, 275, 715, 838, 860 |
| AgsI | TTSAA | 2 cut(s) | 52, 706 |
| AhlI | ACTAGT | 1 cut(s) | 868 |
| AjnI | CCWGG | 4 cut(s) | 376, 450, 877, 1141 |
| Alw21I | GWGCWC | 2 cut(s) | 748, 898 |
| AlwI | GGATC | 3 cut(s) | 316, 359, 889 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 860 |
| Ama87I | CYCGRG | 2 cut(s) | 885, 1130 |
| Aor13HI | TCCGGA | 1 cut(s) | 125 |
| AoxI | GGCC | 1 cut(s) | 1014 |
| ApeKI | GCWGC | 5 cut(s) | 9, 79, 381, 456, 1093 |
| ApoI | RAATTY | 3 cut(s) | 580, 688, 1137 |
| Asp718I | GGTACC | 1 cut(s) | 841 |
| AspLEI | GCGC | 2 cut(s) | 101, 990 |
| AspS9I | GGNCC | 3 cut(s) | 123, 764, 1015 |
| AsuC2I | CCSGG | 1 cut(s) | 306 |
| AsuHPI | GGTGA | 3 cut(s) | 179, 185, 647 |
| AvaI | CYCGRG | 2 cut(s) | 885, 1130 |
| AvaII | GGWCC | 2 cut(s) | 123, 764 |
| BaeGI | GKGCMC | 1 cut(s) | 808 |
| BanI | GGYRCC | 3 cut(s) | 506, 803, 841 |
| BbsI | GAAGAC | 1 cut(s) | 59 |
| Bbv12I | GWGCWC | 2 cut(s) | 748, 898 |
| BbvCI | CCTCAGC | 1 cut(s) | 511 |
| BbvI | GCAGC | 5 cut(s) | 21, 91, 393, 468, 1105 |
| BccI | CCATC | 8 cut(s) | 10, 301, 389, 412, 784, 817, 884, 1198 |
| BceAI | ACGGC | 1 cut(s) | 740 |
| BciT130I | CCWGG | 4 cut(s) | 378, 452, 879, 1143 |
| BciVI | GTATCC | 1 cut(s) | 276 |
| BcnI | CCSGG | 1 cut(s) | 306 |
| BcuI | ACTAGT | 1 cut(s) | 868 |
| BfaI | CTAG | 3 cut(s) | 869, 981, 1234 |
| BfoI | RGCGCY | 1 cut(s) | 102 |
| BfuI | GTATCC | 1 cut(s) | 276 |
| BglII | AGATCT | 1 cut(s) | 1153 |
| BisI | GCNGC | 5 cut(s) | 10, 80, 382, 457, 1094 |
| BlsI | GCNGC | 5 cut(s) | 11, 81, 383, 458, 1095 |
| Bme1390I | CCNGG | 5 cut(s) | 306, 378, 452, 879, 1143 |
| Bme18I | GGWCC | 2 cut(s) | 123, 764 |
| BmeT110I | CYCGRG | 2 cut(s) | 885, 1130 |
| BmgT120I | GGNCC | 3 cut(s) | 123, 764, 1015 |
| BmiI | GGNNCC | 3 cut(s) | 508, 805, 843 |
| BmrFI | CCNGG | 5 cut(s) | 306, 378, 452, 879, 1143 |
| BmsI | GCATC | 5 cut(s) | 179, 565, 628, 650, 1083 |
| BpiI | GAAGAC | 1 cut(s) | 59 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1097, 1129 |
| BpmI | CTGGAG | 3 cut(s) | 837, 861, 882 |
| Bpu10I | CCTNAGC | 1 cut(s) | 511 |
| BpuMI | CCSGG | 1 cut(s) | 306 |
| BsaHI | GRCGYC | 1 cut(s) | 59 |
| BsaJI | CCNNGG | 4 cut(s) | 271, 451, 832, 1142 |
| BsaWI | WCCGGW | 2 cut(s) | 125, 473 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 46, 68, 76, 98, 855, 885 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 158, 233, 275, 715, 838, 860 |
| Bse1I | ACTGG | 2 cut(s) | 100, 854 |
| Bse3DI | GCAATG | 2 cut(s) | 267, 1195 |
| BseAI | TCCGGA | 1 cut(s) | 125 |
| BseBI | CCWGG | 4 cut(s) | 378, 452, 879, 1143 |
| BseDI | CCNNGG | 4 cut(s) | 271, 451, 832, 1142 |
| BseGI | GGATG | 4 cut(s) | 289, 293, 795, 895 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 158, 233, 275, 715, 838, 860 |
| BseMI | GCAATG | 2 cut(s) | 267, 1195 |
| BseMII | CTCAG | 8 cut(s) | 86, 399, 525, 531, 599, 659, 1069, 1148 |
| BseNI | ACTGG | 2 cut(s) | 100, 854 |
| BseRI | GAGGAG | 1 cut(s) | 231 |
| BseSI | GKGCMC | 1 cut(s) | 808 |
| BseXI | GCAGC | 5 cut(s) | 21, 91, 393, 468, 1105 |
| BseYI | CCCAGC | 1 cut(s) | 1017 |
| BsgI | GTGCAG | 1 cut(s) | 645 |
| BshFI | GGCC | 1 cut(s) | 1016 |
| BshNI | GGYRCC | 3 cut(s) | 506, 803, 841 |
| BsiHKAI | GWGCWC | 2 cut(s) | 748, 898 |
| BsiHKCI | CYCGRG | 2 cut(s) | 885, 1130 |
| BsiSI | CCGG | 3 cut(s) | 126, 305, 474 |
| BslFI | GGGAC | 1 cut(s) | 162 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 158, 233, 275, 715, 838, 860 |
| BsmFI | GGGAC | 1 cut(s) | 162 |
| BsmI | GAATGC | 1 cut(s) | 1114 |
| BsnI | GGCC | 1 cut(s) | 1016 |
| BsoBI | CYCGRG | 2 cut(s) | 885, 1130 |
| Bsp1286I | GDGCHC | 3 cut(s) | 748, 808, 898 |
| Bsp13I | TCCGGA | 1 cut(s) | 125 |
| Bsp143I | GATC | 7 cut(s) | 308, 351, 429, 437, 881, 1058, 1153 |
| Bsp19I | CCATGG | 1 cut(s) | 271 |
| BspACI | CCGC | 3 cut(s) | 846, 943, 1072 |
| BspANI | GGCC | 1 cut(s) | 1016 |
| BspCNI | CTCAG | 8 cut(s) | 85, 400, 524, 532, 598, 658, 1068, 1149 |
| BspEI | TCCGGA | 1 cut(s) | 125 |
| BspLI | GGNNCC | 3 cut(s) | 508, 805, 843 |
| BspPI | GGATC | 3 cut(s) | 316, 359, 889 |
| BspT107I | GGYRCC | 3 cut(s) | 506, 803, 841 |
| BsrDI | GCAATG | 2 cut(s) | 267, 1195 |
| BsrI | ACTGG | 2 cut(s) | 100, 854 |
| BssECI | CCNNGG | 4 cut(s) | 271, 451, 832, 1142 |
| BssMI | GATC | 7 cut(s) | 308, 351, 429, 437, 881, 1058, 1153 |
| BssNI | GRCGYC | 1 cut(s) | 59 |
| BssT1I | CCWWGG | 1 cut(s) | 271 |
| Bst2UI | CCWGG | 4 cut(s) | 378, 452, 879, 1143 |
| Bst4CI | ACNGT | 1 cut(s) | 109 |
| BstACI | GRCGYC | 1 cut(s) | 59 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 223 |
| BstC8I | GCNNGC | 6 cut(s) | 103, 825, 992, 996, 1014, 1023 |
| BstDEI | CTNAG | 9 cut(s) | 72, 408, 511, 531, 540, 585, 645, 1055, 1157 |
| BstDSI | CCRYGG | 2 cut(s) | 271, 832 |
| BstF5I | GGATG | 4 cut(s) | 289, 293, 795, 895 |
| BstH2I | RGCGCY | 1 cut(s) | 102 |
| BstHHI | GCGC | 2 cut(s) | 101, 990 |
| BstKTI | GATC | 7 cut(s) | 311, 354, 432, 440, 884, 1061, 1156 |
| BstMBI | GATC | 7 cut(s) | 308, 351, 429, 437, 881, 1058, 1153 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 223, 456, 555, 743, 752, 824, 949, 1018, 1022 |
| BstNI | CCWGG | 4 cut(s) | 378, 452, 879, 1143 |
| BstSCI | CCNGG | 5 cut(s) | 304, 376, 450, 877, 1141 |
| BstSLI | GKGCMC | 1 cut(s) | 808 |
| BstV1I | GCAGC | 5 cut(s) | 21, 91, 393, 468, 1105 |
| BstV2I | GAAGAC | 1 cut(s) | 59 |
| BstX2I | RGATCY | 3 cut(s) | 308, 881, 1153 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 204 |
| BstYI | RGATCY | 3 cut(s) | 308, 881, 1153 |
| BsuI | GTATCC | 1 cut(s) | 276 |
| BsuRI | GGCC | 1 cut(s) | 1016 |
| BtgI | CCRYGG | 2 cut(s) | 271, 832 |
| BtgZI | GCGATG | 1 cut(s) | 588 |
| BtsCI | GGATG | 4 cut(s) | 289, 293, 795, 895 |
| BtsI | GCAGTG | 2 cut(s) | 556, 705 |
| BtsIMutI | CAGTG | 4 cut(s) | 93, 105, 556, 705 |
| Cac8I | GCNNGC | 6 cut(s) | 103, 825, 992, 996, 1014, 1023 |
| CaiI | CAGNNNCTG | 1 cut(s) | 860 |
| CfoI | GCGC | 2 cut(s) | 101, 990 |
| Cfr13I | GGNCC | 3 cut(s) | 123, 764, 1015 |
| CseI | GACGC | 1 cut(s) | 67 |
| Csp6I | GTAC | 2 cut(s) | 237, 842 |
| CviAII | CATG | 8 cut(s) | 158, 272, 298, 334, 466, 820, 1148, 1223 |
| CviQI | GTAC | 2 cut(s) | 237, 842 |
| DdeI | CTNAG | 9 cut(s) | 72, 408, 511, 531, 540, 585, 645, 1055, 1157 |
| DpnI | GATC | 7 cut(s) | 310, 353, 431, 439, 883, 1060, 1155 |
| DpnII | GATC | 7 cut(s) | 308, 351, 429, 437, 881, 1058, 1153 |
| DraIII | CACNNNGTG | 1 cut(s) | 700 |
| Eco130I | CCWWGG | 1 cut(s) | 271 |
| Eco47I | GGWCC | 2 cut(s) | 123, 764 |
| Eco57I | CTGAAG | 3 cut(s) | 623, 1047, 1139 |
| Eco88I | CYCGRG | 2 cut(s) | 885, 1130 |
| EcoRII | CCWGG | 4 cut(s) | 376, 450, 877, 1141 |
| EcoT14I | CCWWGG | 1 cut(s) | 271 |
| EcoT22I | ATGCAT | 1 cut(s) | 643 |
| ErhI | CCWWGG | 1 cut(s) | 271 |
| FaeI | CATG | 8 cut(s) | 161, 275, 301, 337, 469, 823, 1151, 1226 |
| FaqI | GGGAC | 1 cut(s) | 162 |
| FatI | CATG | 8 cut(s) | 157, 271, 297, 333, 465, 819, 1147, 1222 |
| FauI | CCCGC | 1 cut(s) | 853 |
| FauNDI | CATATG | 2 cut(s) | 232, 253 |
| Fnu4HI | GCNGC | 5 cut(s) | 10, 80, 382, 457, 1094 |
| FokI | GGATG | 4 cut(s) | 276, 280, 802, 902 |
| Fsp4HI | GCNGC | 5 cut(s) | 10, 80, 382, 457, 1094 |
| FspBI | CTAG | 3 cut(s) | 869, 981, 1234 |
| FspI | TGCGCA | 1 cut(s) | 989 |
| GlaI | GCGC | 2 cut(s) | 100, 989 |
| GluI | GCNGC | 5 cut(s) | 10, 80, 382, 457, 1094 |
| GsaI | CCCAGC | 1 cut(s) | 1021 |
| GsuI | CTGGAG | 3 cut(s) | 837, 861, 882 |
| HaeII | RGCGCY | 1 cut(s) | 102 |
| HaeIII | GGCC | 1 cut(s) | 1016 |
| HapII | CCGG | 3 cut(s) | 126, 305, 474 |
| HgaI | GACGC | 1 cut(s) | 67 |
| HhaI | GCGC | 2 cut(s) | 101, 990 |
| Hin1I | GRCGYC | 1 cut(s) | 59 |
| Hin1II | CATG | 8 cut(s) | 161, 275, 301, 337, 469, 823, 1151, 1226 |
| Hin6I | GCGC | 2 cut(s) | 99, 988 |
| HinP1I | GCGC | 2 cut(s) | 99, 988 |
| HincII | GTYRAC | 1 cut(s) | 1069 |
| HindII | GTYRAC | 1 cut(s) | 1069 |
| HinfI | GANTC | 3 cut(s) | 593, 623, 965 |
| HpaI | GTTAAC | 1 cut(s) | 1069 |
| HpaII | CCGG | 3 cut(s) | 126, 305, 474 |
| HphI | GGTGA | 3 cut(s) | 179, 185, 647 |
| Hpy166II | GTNNAC | 1 cut(s) | 1069 |
| Hpy188I | TCNGA | 8 cut(s) | 409, 588, 648, 1058, 1063, 1105, 1158, 1203 |
| Hpy188III | TCNNGA | 6 cut(s) | 74, 116, 126, 609, 887, 1078 |
| Hpy8I | GTNNAC | 1 cut(s) | 1069 |
| Hpy99I | CGWCG | 2 cut(s) | 61, 978 |
| HpyAV | CCTTC | 7 cut(s) | 37, 548, 560, 609, 626, 832, 1114 |
| HpyCH4III | ACNGT | 1 cut(s) | 109 |
| HpyCH4V | TGCA | 7 cut(s) | 260, 578, 641, 662, 770, 827, 1222 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 223, 456, 555, 743, 752, 824, 949, 1018, 1022 |
| HpyF3I | CTNAG | 9 cut(s) | 72, 408, 511, 531, 540, 585, 645, 1055, 1157 |
| Hsp92I | GRCGYC | 1 cut(s) | 59 |
| Hsp92II | CATG | 8 cut(s) | 161, 275, 301, 337, 469, 823, 1151, 1226 |
| HspAI | GCGC | 2 cut(s) | 99, 988 |
| Kpn2I | TCCGGA | 1 cut(s) | 125 |
| KpnI | GGTACC | 1 cut(s) | 845 |
| KspAI | GTTAAC | 1 cut(s) | 1069 |
| Kzo9I | GATC | 7 cut(s) | 308, 351, 429, 437, 881, 1058, 1153 |
| LmnI | GCTCC | 2 cut(s) | 76, 751 |
| Lsp1109I | GCAGC | 5 cut(s) | 21, 91, 393, 468, 1105 |
| LweI | GCATC | 5 cut(s) | 179, 565, 628, 650, 1083 |
| MaeI | CTAG | 3 cut(s) | 869, 981, 1234 |
| MaeIII | GTNAC | 7 cut(s) | 368, 423, 590, 871, 912, 1172, 1229 |
| MalI | GATC | 7 cut(s) | 310, 353, 431, 439, 883, 1060, 1155 |
| MboI | GATC | 7 cut(s) | 308, 351, 429, 437, 881, 1058, 1153 |
| MboII | GAAGA | 3 cut(s) | 64, 804, 1163 |
| MfeI | CAATTG | 1 cut(s) | 720 |
| MflI | RGATCY | 3 cut(s) | 308, 881, 1153 |
| MhlI | GDGCHC | 3 cut(s) | 748, 808, 898 |
| MluCI | AATT | 5 cut(s) | 580, 667, 688, 720, 1137 |
| MlyI | GAGTC | 1 cut(s) | 587 |
| Mph1103I | ATGCAT | 1 cut(s) | 643 |
| MroI | TCCGGA | 1 cut(s) | 125 |
| MseI | TTAA | 5 cut(s) | 111, 461, 933, 1034, 1068 |
| MslI | CAYNNNNRTG | 2 cut(s) | 202, 252 |
| MspA1I | CMGCKG | 2 cut(s) | 737, 943 |
| MspI | CCGG | 3 cut(s) | 126, 305, 474 |
| MspR9I | CCNGG | 5 cut(s) | 306, 378, 452, 879, 1143 |
| MunI | CAATTG | 1 cut(s) | 720 |
| Mva1269I | GAATGC | 1 cut(s) | 1114 |
| MvaI | CCWGG | 4 cut(s) | 378, 452, 879, 1143 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 223, 456, 555, 743, 752, 824, 949, 1018, 1022 |
| NciI | CCSGG | 1 cut(s) | 306 |
| NcoI | CCATGG | 1 cut(s) | 271 |
| NdeI | CATATG | 2 cut(s) | 232, 253 |
| NdeII | GATC | 7 cut(s) | 308, 351, 429, 437, 881, 1058, 1153 |
| NlaIII | CATG | 8 cut(s) | 161, 275, 301, 337, 469, 823, 1151, 1226 |
| NlaIV | GGNNCC | 3 cut(s) | 508, 805, 843 |
| NmuCI | GTSAC | 3 cut(s) | 590, 1172, 1229 |
| NsbI | TGCGCA | 1 cut(s) | 989 |
| NsiI | ATGCAT | 1 cut(s) | 643 |
| PctI | GAATGC | 1 cut(s) | 1114 |
| PfeI | GAWTC | 2 cut(s) | 623, 965 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 860 |
| PfoI | TCCNGGA | 2 cut(s) | 304, 877 |
| PkrI | GCNGC | 5 cut(s) | 11, 81, 383, 458, 1095 |
| PleI | GAGTC | 1 cut(s) | 587 |
| PpsI | GAGTC | 1 cut(s) | 587 |
| Psp6I | CCWGG | 4 cut(s) | 376, 450, 877, 1141 |
| PspFI | CCCAGC | 1 cut(s) | 1017 |
| PspGI | CCWGG | 4 cut(s) | 376, 450, 877, 1141 |
| PspN4I | GGNNCC | 3 cut(s) | 508, 805, 843 |
| PspPI | GGNCC | 3 cut(s) | 123, 764, 1015 |
| PstNI | CAGNNNCTG | 1 cut(s) | 860 |
| PsuI | RGATCY | 3 cut(s) | 308, 881, 1153 |
| PvuII | CAGCTG | 1 cut(s) | 737 |
| RsaI | GTAC | 2 cut(s) | 238, 843 |
| RsaNI | GTAC | 2 cut(s) | 237, 842 |
| RseI | CAYNNNNRTG | 2 cut(s) | 202, 252 |
| SaqAI | TTAA | 5 cut(s) | 111, 461, 933, 1034, 1068 |
| SatI | GCNGC | 5 cut(s) | 10, 80, 382, 457, 1094 |
| Sau3AI | GATC | 7 cut(s) | 308, 351, 429, 437, 881, 1058, 1153 |
| Sau96I | GGNCC | 3 cut(s) | 123, 764, 1015 |
| SchI | GAGTC | 1 cut(s) | 587 |
| ScrFI | CCNGG | 5 cut(s) | 306, 378, 452, 879, 1143 |
| SduI | GDGCHC | 3 cut(s) | 748, 808, 898 |
| SfaNI | GCATC | 5 cut(s) | 179, 565, 628, 650, 1083 |
| SinI | GGWCC | 2 cut(s) | 123, 764 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 202, 252 |
| SpeI | ACTAGT | 1 cut(s) | 868 |
| Sse9I | AATT | 5 cut(s) | 580, 667, 688, 720, 1137 |
| SsiI | CCGC | 3 cut(s) | 846, 943, 1072 |
| SspI | AATATT | 1 cut(s) | 784 |
| SspMI | CTAG | 3 cut(s) | 869, 981, 1234 |
| StyD4I | CCNGG | 5 cut(s) | 304, 376, 450, 877, 1141 |
| StyI | CCWWGG | 1 cut(s) | 271 |
| TaaI | ACNGT | 1 cut(s) | 109 |
| TasI | AATT | 5 cut(s) | 580, 667, 688, 720, 1137 |
| TfiI | GAWTC | 2 cut(s) | 623, 965 |
| Tru1I | TTAA | 5 cut(s) | 111, 461, 933, 1034, 1068 |
| Tru9I | TTAA | 5 cut(s) | 111, 461, 933, 1034, 1068 |
| TscAI | CASTG | 4 cut(s) | 100, 112, 556, 705 |
| TseFI | GTSAC | 3 cut(s) | 590, 1172, 1229 |
| TseI | GCWGC | 5 cut(s) | 9, 79, 381, 456, 1093 |
| Tsp45I | GTSAC | 3 cut(s) | 590, 1172, 1229 |
| TspDTI | ATGAA | 3 cut(s) | 936, 1056, 1164 |
| TspGWI | ACGGA | 1 cut(s) | 821 |
| TspRI | CASTG | 4 cut(s) | 100, 112, 556, 705 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 860 |
| VpaK11BI | GGWCC | 2 cut(s) | 123, 764 |
| XapI | RAATTY | 3 cut(s) | 580, 688, 1137 |
| XspI | CTAG | 3 cut(s) | 869, 981, 1234 |
| Zsp2I | ATGCAT | 1 cut(s) | 643 |