FvH4_5g23200
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
14565290 .. 14572537
7248 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23200.t1

Sequence Viewer

Length: 1236 bp
ATGGGTAGCAGCGAGATGGATAAACCAGCTAAAGAGAAAGAAAAGGAGTCGAAGACCACACCTCCTTCTACTCAGGAGCAGCAGTCTGCTACCACTAGCGCTGGCACTGTTAATCCTGATTGGTCGGGATTTCAGGCATATTCTCCTATGCCTCCACATGGGTTTATGGCATCAAGTCCCCAAGCTCACCCTCACCCATATATGTGGGGGGTTCAGCATATTATGCCTCCATATGGTACTCCTCCCCACCCATATGTCGCGATGTATCCCCATGGTGGCTTATATGCTCATCCATCCATGCCTCCAGGATCTTACCCATTCAGCCCTTTTGCTATGCCCTCGCCAAATGGGATTGTAGAGGCTTCTGGTAACACACCTGGCAGCATAGAAGCAGATGGAAAGCCATCTGAGGGTAAGGAAAAGTTACCGATCAAAAGATCAAAAGGAAGCCTGGGCAGCTTAAACATGATTACCGGAAAGAATAATGAGCTTGCTAAAACATCAGGAGCCTCGGCTAATGGAGTTTATTCCAAGAGTGCTGAGAGTGGTAGTGAAGGCACAAGTGAAGGAAGCGATGCAAATTCTCAGAGTGACTCACAACTGAAGTCAGGAGGAAGGGGAGATTCTTTGGAAGGCGATGCATCTCAGAATGGTGGTTCTGCACATAATTCTCAGAATGGAACACCAAATTCTCACACAGTGTTGAACCCCGCAATGGGCATGGTGCCAATTACAGCTGCTGGTGCTCCAGGTGCCGTTACTGGCCCTGCAACAAACCTTAATATTGGGATGGACTATTGGGGTGCCCCATCTTCTGCCATGCCTGCAATCCGTGGGAAGGTTCCCGCTACTCCAGTTGCTGGAGGACTTGTTACTCCTGGATCTCGGGATGGTGCTCAGTCACAGCTCTGGTTACAAGATGAAAGAGAGCTTAAACGACAGCGGAGAAAGCAGTCAAATAGGGAATCTGCTCGTCGTTCTAGGTTACGCAAGCAGGCTGAATGTGATGAGCTGGCCCAGCGTGCTGAAGTCCTAAAAGATGAAAATGCCACACTCAGATCAGAAGTTAACCGCATCAGGAGTGAGTATGAGCAGCTTCTTTCAGAGAATGCCTCCCTGAAGGAGAGGCTCGGAGAAATTCCTGGGCATGAAGATCTGAGATCTGGTAGAAGTGACCAACACTTAAGTAATGACACTAATCAGACTGCACAGACAGAACTGCATGGTGGTCACTAG

Protein Analysis

412

Amino Acids

43.54

Weight (kDa)

6.37

Isoelectric Point (pI)

60.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFMR PF07777 1 - 101 1.4e-28 G-box binding protein MFMR
MFMR_assoc PF16596 140 - 273 2.1e-53 Disordered region downstream of MFMR
bZIP_1 PF00170 308 - 370 1e-20 bZIP transcription factor
bZIP_2 PF07716 310 - 360 2.8e-07 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 724, 752, 803
AccB7I CCANNNNNTGG 1 cut(s) 860
AccII CGCG 1 cut(s) 260
AciI CCGC 4 cut(s) 711, 846, 943, 1072
AclWI GGATC 2 cut(s) 316, 889
AcsI RAATTY 3 cut(s) 580, 688, 1137
AcuI CTGAAG 3 cut(s) 623, 1047, 1139
AdeI CACNNNGTG 1 cut(s) 700
AfaI GTAC 1 cut(s) 238
AfeI AGCGCT 1 cut(s) 100
AfiI CCNNNNNNNGG 8 cut(s) 158, 233, 275, 410, 715, 716, 838, 860
AflII CTTAAG 1 cut(s) 1183
AgsI TTSAA 1 cut(s) 706
AjnI CCWGG 6 cut(s) 304, 376, 450, 748, 877, 1141
AluBI AGCT 9 cut(s) 29, 185, 459, 490, 737, 907, 931, 1012, 1096
AluI AGCT 9 cut(s) 29, 185, 459, 490, 737, 907, 931, 1012, 1096
Alw21I GWGCWC 2 cut(s) 748, 898
AlwI GGATC 2 cut(s) 316, 889
AlwNI CAGNNNCTG 2 cut(s) 740, 860
Ama87I CYCGRG 1 cut(s) 885
Aor51HI AGCGCT 1 cut(s) 100
AoxI GGCC 2 cut(s) 763, 1014
ApeKI GCWGC 6 cut(s) 9, 79, 381, 456, 737, 1093
ApoI RAATTY 3 cut(s) 580, 688, 1137
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 764, 1015
AsuHPI GGTGA 2 cut(s) 179, 185
AvaI CYCGRG 1 cut(s) 885
BaeGI GKGCMC 1 cut(s) 808
BanI GGYRCC 3 cut(s) 724, 752, 803
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 748, 898
BbvI GCAGC 6 cut(s) 21, 91, 393, 468, 724, 1105
BccI CCATC 7 cut(s) 10, 301, 389, 412, 784, 817, 884
BceAI ACGGC 1 cut(s) 740
BciT130I CCWGG 6 cut(s) 306, 378, 452, 750, 879, 1143
BciVI GTATCC 1 cut(s) 276
BfaI CTAG 3 cut(s) 96, 981, 1234
BfoI RGCGCY 1 cut(s) 102
BfrI CTTAAG 1 cut(s) 1183
BfuI GTATCC 1 cut(s) 276
BglII AGATCT 2 cut(s) 1153, 1160
BisI GCNGC 6 cut(s) 10, 80, 382, 457, 738, 1094
BlsI GCNGC 6 cut(s) 11, 81, 383, 458, 739, 1095
Bme1390I CCNGG 6 cut(s) 306, 378, 452, 750, 879, 1143
BmeT110I CYCGRG 1 cut(s) 885
BmgT120I GGNCC 2 cut(s) 764, 1015
BmiI GGNNCC 5 cut(s) 508, 726, 754, 805, 843
BmrFI CCNGG 6 cut(s) 306, 378, 452, 750, 879, 1143
BmsI GCATC 5 cut(s) 179, 565, 628, 650, 1083
BpiI GAAGAC 1 cut(s) 59
BplI GAGNNNNNCTC 2 cut(s) 1097, 1129
BpmI CTGGAG 4 cut(s) 288, 732, 837, 882
BsaJI CCNNGG 5 cut(s) 271, 451, 510, 832, 1142
BsaWI WCCGGW 1 cut(s) 473
BsaXI ACNNNNNCTCC 6 cut(s) 46, 68, 76, 98, 855, 885
Bsc4I CCNNNNNNNGG 8 cut(s) 158, 233, 275, 410, 715, 716, 838, 860
Bse1I ACTGG 2 cut(s) 766, 854
Bse3DI GCAATG 1 cut(s) 720
BseBI CCWGG 6 cut(s) 306, 378, 452, 750, 879, 1143
BseDI CCNNGG 5 cut(s) 271, 451, 510, 832, 1142
BseGI GGATG 4 cut(s) 289, 293, 795, 895
BseLI CCNNNNNNNGG 8 cut(s) 158, 233, 275, 410, 715, 716, 838, 860
BseMI GCAATG 1 cut(s) 720
BseMII CTCAG 9 cut(s) 86, 399, 531, 599, 659, 686, 911, 1069, 1148
BseNI ACTGG 2 cut(s) 766, 854
BseRI GAGGAG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 808
BseXI GCAGC 6 cut(s) 21, 91, 393, 468, 724, 1105
BseYI CCCAGC 1 cut(s) 1017
BsgI GTGCAG 2 cut(s) 645, 1191
Bsh1236I CGCG 1 cut(s) 260
BshFI GGCC 2 cut(s) 765, 1016
BshNI GGYRCC 3 cut(s) 724, 752, 803
BsiHKAI GWGCWC 2 cut(s) 748, 898
BsiHKCI CYCGRG 1 cut(s) 885
BsiSI CCGG 1 cut(s) 474
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 8 cut(s) 158, 233, 275, 410, 715, 716, 838, 860
BsmFI GGGAC 1 cut(s) 162
BsmI GAATGC 1 cut(s) 1114
BsnI GGCC 2 cut(s) 765, 1016
BsoBI CYCGRG 1 cut(s) 885
Bsp1286I GDGCHC 3 cut(s) 748, 808, 898
Bsp143I GATC 7 cut(s) 308, 429, 437, 881, 1058, 1153, 1160
Bsp19I CCATGG 1 cut(s) 271
Bsp68I TCGCGA 1 cut(s) 260
BspACI CCGC 4 cut(s) 711, 846, 943, 1072
BspANI GGCC 2 cut(s) 765, 1016
BspCNI CTCAG 9 cut(s) 85, 400, 532, 598, 658, 685, 910, 1068, 1149
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 5 cut(s) 508, 726, 754, 805, 843
BspPI GGATC 2 cut(s) 316, 889
BspT107I GGYRCC 3 cut(s) 724, 752, 803
BspTI CTTAAG 1 cut(s) 1183
BsrDI GCAATG 1 cut(s) 720
BsrI ACTGG 2 cut(s) 766, 854
BssECI CCNNGG 5 cut(s) 271, 451, 510, 832, 1142
BssMI GATC 7 cut(s) 308, 429, 437, 881, 1058, 1153, 1160
BssT1I CCWWGG 1 cut(s) 271
Bst2UI CCWGG 6 cut(s) 306, 378, 452, 750, 879, 1143
Bst4CI ACNGT 2 cut(s) 109, 700
BstAFI CTTAAG 1 cut(s) 1183
BstAPI GCANNNNNTGC 1 cut(s) 223
BstC8I GCNNGC 7 cut(s) 103, 492, 825, 992, 996, 1014, 1023
BstDEI CTNAG 9 cut(s) 72, 408, 540, 585, 645, 672, 897, 1055, 1157
BstDSI CCRYGG 2 cut(s) 271, 832
BstF5I GGATG 4 cut(s) 289, 293, 795, 895
BstFNI CGCG 1 cut(s) 260
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 7 cut(s) 311, 432, 440, 884, 1061, 1156, 1163
BstMBI GATC 7 cut(s) 308, 429, 437, 881, 1058, 1153, 1160
BstMWI GCNNNNNNNGC 8 cut(s) 223, 456, 743, 752, 824, 949, 1018, 1022
BstNI CCWGG 6 cut(s) 306, 378, 452, 750, 879, 1143
BstSCI CCNGG 6 cut(s) 304, 376, 450, 748, 877, 1141
BstSLI GKGCMC 1 cut(s) 808
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 6 cut(s) 21, 91, 393, 468, 724, 1105
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 4 cut(s) 308, 881, 1153, 1160
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 4 cut(s) 308, 881, 1153, 1160
BsuI GTATCC 1 cut(s) 276
BsuRI GGCC 2 cut(s) 765, 1016
BtgI CCRYGG 2 cut(s) 271, 832
BtgZI GCGATG 3 cut(s) 275, 588, 651
BtsCI GGATG 4 cut(s) 289, 293, 795, 895
BtsIMutI CAGTG 2 cut(s) 105, 705
BtuMI TCGCGA 1 cut(s) 260
Cac8I GCNNGC 7 cut(s) 103, 492, 825, 992, 996, 1014, 1023
CaiI CAGNNNCTG 2 cut(s) 740, 860
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 764, 1015
Csp6I GTAC 1 cut(s) 237
CviAII CATG 8 cut(s) 158, 272, 298, 466, 721, 820, 1148, 1223
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 9 cut(s) 72, 408, 540, 585, 645, 672, 897, 1055, 1157
DpnI GATC 7 cut(s) 310, 431, 439, 883, 1060, 1155, 1162
DpnII GATC 7 cut(s) 308, 429, 437, 881, 1058, 1153, 1160
DraIII CACNNNGTG 1 cut(s) 700
Eco130I CCWWGG 1 cut(s) 271
Eco47III AGCGCT 1 cut(s) 100
Eco57I CTGAAG 3 cut(s) 623, 1047, 1139
Eco88I CYCGRG 1 cut(s) 885
EcoRII CCWGG 6 cut(s) 304, 376, 450, 748, 877, 1141
EcoT14I CCWWGG 1 cut(s) 271
EcoT22I ATGCAT 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 8 cut(s) 161, 275, 301, 469, 724, 823, 1151, 1226
FaqI GGGAC 1 cut(s) 162
FatI CATG 8 cut(s) 157, 271, 297, 465, 720, 819, 1147, 1222
FauI CCCGC 2 cut(s) 718, 853
FauNDI CATATG 2 cut(s) 232, 253
Fnu4HI GCNGC 6 cut(s) 10, 80, 382, 457, 738, 1094
FokI GGATG 4 cut(s) 276, 280, 802, 902
Fsp4HI GCNGC 6 cut(s) 10, 80, 382, 457, 738, 1094
FspBI CTAG 3 cut(s) 96, 981, 1234
GlaI GCGC 1 cut(s) 100
GluI GCNGC 6 cut(s) 10, 80, 382, 457, 738, 1094
GsaI CCCAGC 1 cut(s) 1021
GsuI CTGGAG 4 cut(s) 288, 732, 837, 882
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 2 cut(s) 765, 1016
HapII CCGG 1 cut(s) 474
HhaI GCGC 1 cut(s) 101
Hin1II CATG 8 cut(s) 161, 275, 301, 469, 724, 823, 1151, 1226
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 1069
HindII GTYRAC 1 cut(s) 1069
HinfI GANTC 4 cut(s) 47, 593, 623, 965
HpaI GTTAAC 1 cut(s) 1069
HpaII CCGG 1 cut(s) 474
HphI GGTGA 2 cut(s) 179, 185
Hpy166II GTNNAC 1 cut(s) 1069
Hpy188III TCNNGA 8 cut(s) 74, 116, 126, 259, 504, 609, 887, 1078
Hpy8I GTNNAC 1 cut(s) 1069
Hpy99I CGWCG 1 cut(s) 978
HpyAV CCTTC 7 cut(s) 75, 548, 560, 609, 626, 832, 1114
HpyCH4III ACNGT 2 cut(s) 109, 700
HpyCH4V TGCA 7 cut(s) 578, 641, 662, 770, 827, 1208, 1222
HpyF10VI GCNNNNNNNGC 8 cut(s) 223, 456, 743, 752, 824, 949, 1018, 1022
HpyF3I CTNAG 9 cut(s) 72, 408, 540, 585, 645, 672, 897, 1055, 1157
Hsp92II CATG 8 cut(s) 161, 275, 301, 469, 724, 823, 1151, 1226
HspAI GCGC 1 cut(s) 99
KspAI GTTAAC 1 cut(s) 1069
Kzo9I GATC 7 cut(s) 308, 429, 437, 881, 1058, 1153, 1160
LmnI GCTCC 3 cut(s) 76, 506, 751
Lsp1109I GCAGC 6 cut(s) 21, 91, 393, 468, 724, 1105
LweI GCATC 5 cut(s) 179, 565, 628, 650, 1083
MaeI CTAG 3 cut(s) 96, 981, 1234
MalI GATC 7 cut(s) 310, 431, 439, 883, 1060, 1155, 1162
MboI GATC 7 cut(s) 308, 429, 437, 881, 1058, 1153, 1160
MboII GAAGA 3 cut(s) 64, 804, 1163
MflI RGATCY 4 cut(s) 308, 881, 1153, 1160
MhlI GDGCHC 3 cut(s) 748, 808, 898
MluCI AATT 5 cut(s) 580, 667, 688, 729, 1137
MlyI GAGTC 2 cut(s) 56, 587
Mph1103I ATGCAT 1 cut(s) 643
MseI TTAA 6 cut(s) 111, 461, 780, 933, 1068, 1184
MslI CAYNNNNRTG 2 cut(s) 202, 252
MspA1I CMGCKG 2 cut(s) 737, 943
MspCI CTTAAG 1 cut(s) 1183
MspI CCGG 1 cut(s) 474
MspR9I CCNGG 6 cut(s) 306, 378, 452, 750, 879, 1143
Mva1269I GAATGC 1 cut(s) 1114
MvaI CCWGG 6 cut(s) 306, 378, 452, 750, 879, 1143
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 8 cut(s) 223, 456, 743, 752, 824, 949, 1018, 1022
NcoI CCATGG 1 cut(s) 271
NdeI CATATG 2 cut(s) 232, 253
NdeII GATC 7 cut(s) 308, 429, 437, 881, 1058, 1153, 1160
NlaIII CATG 8 cut(s) 161, 275, 301, 469, 724, 823, 1151, 1226
NlaIV GGNNCC 5 cut(s) 508, 726, 754, 805, 843
NmeAIII GCCGAG 1 cut(s) 491
NmuCI GTSAC 4 cut(s) 590, 900, 1172, 1229
NruI TCGCGA 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 643
PctI GAATGC 1 cut(s) 1114
PfeI GAWTC 2 cut(s) 623, 965
PflMI CCANNNNNTGG 1 cut(s) 860
PfoI TCCNGGA 2 cut(s) 304, 877
PkrI GCNGC 6 cut(s) 11, 81, 383, 458, 739, 1095
PleI GAGTC 2 cut(s) 55, 587
PpsI GAGTC 2 cut(s) 55, 587
Psp6I CCWGG 6 cut(s) 304, 376, 450, 748, 877, 1141
PspFI CCCAGC 1 cut(s) 1017
PspGI CCWGG 6 cut(s) 304, 376, 450, 748, 877, 1141
PspN4I GGNNCC 5 cut(s) 508, 726, 754, 805, 843
PspPI GGNCC 2 cut(s) 764, 1015
PstNI CAGNNNCTG 2 cut(s) 740, 860
PsuI RGATCY 4 cut(s) 308, 881, 1153, 1160
PvuII CAGCTG 1 cut(s) 737
RruI TCGCGA 1 cut(s) 260
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
RseI CAYNNNNRTG 2 cut(s) 202, 252
SaqAI TTAA 6 cut(s) 111, 461, 780, 933, 1068, 1184
SatI GCNGC 6 cut(s) 10, 80, 382, 457, 738, 1094
Sau3AI GATC 7 cut(s) 308, 429, 437, 881, 1058, 1153, 1160
Sau96I GGNCC 2 cut(s) 764, 1015
SchI GAGTC 2 cut(s) 56, 587
ScrFI CCNGG 6 cut(s) 306, 378, 452, 750, 879, 1143
SduI GDGCHC 3 cut(s) 748, 808, 898
SfaNI GCATC 5 cut(s) 179, 565, 628, 650, 1083
SmiMI CAYNNNNRTG 2 cut(s) 202, 252
SmlI CTYRAG 1 cut(s) 1183
SmoI CTYRAG 1 cut(s) 1183
Sse9I AATT 5 cut(s) 580, 667, 688, 729, 1137
SsiI CCGC 4 cut(s) 711, 846, 943, 1072
SspI AATATT 1 cut(s) 784
SspMI CTAG 3 cut(s) 96, 981, 1234
StyD4I CCNGG 6 cut(s) 304, 376, 450, 748, 877, 1141
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 2 cut(s) 109, 700
TaqI TCGA 1 cut(s) 50
TasI AATT 5 cut(s) 580, 667, 688, 729, 1137
TfiI GAWTC 2 cut(s) 623, 965
Tru1I TTAA 6 cut(s) 111, 461, 780, 933, 1068, 1184
Tru9I TTAA 6 cut(s) 111, 461, 780, 933, 1068, 1184
TscAI CASTG 2 cut(s) 112, 705
TseFI GTSAC 4 cut(s) 590, 900, 1172, 1229
TseI GCWGC 6 cut(s) 9, 79, 381, 456, 737, 1093
Tsp45I GTSAC 4 cut(s) 590, 900, 1172, 1229
TspDTI ATGAA 3 cut(s) 936, 1056, 1164
TspGWI ACGGA 1 cut(s) 821
TspRI CASTG 2 cut(s) 112, 705
Van91I CCANNNNNTGG 1 cut(s) 860
Vha464I CTTAAG 1 cut(s) 1183
XapI RAATTY 3 cut(s) 580, 688, 1137
XspI CTAG 3 cut(s) 96, 981, 1234
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.