Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008553

Physical Location & Seq

Genomic Coordinates Reverse (-)

23491942 .. 23499409

Gene Structure 7468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG258200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGTAGCAGCGAGATGGATAAACCAGCTAAAGAGAAAGAGAAGGAGTTGAAGACGACGCCTCCTACTACTCAGGAGCAGCAGTCTGCTACCACTAGCGCTGGCACTGTTAATCCTGATTGGTCCGGATTTCAGGCATATTCTCCTATGCCTCCACATGGGTTTATGGCATCAAGTCCCCAAGCTCACCCTCACCCATATATGTGGGGCGTTCAGCATATTATGCCTCCATATGGTACTCCTCCACACCCATATGTTGCAATGTATCCCCATGGTGGCTTATATGCTCATCCATCCATGCCTCCGGGATCTTACCCTTTCAGCCCTTTTGCTATGCCCTCGCCAAATGGGATCGTAGAGGCTTCTGGTAACACACCTGGCAGCATAGAAGCAGATGGTAAACCATCTGAGGCAAAGGAAAAGTTACCGATCAAAAGATCAAAAGGAAGCCTGGGCAGCTTAAACATGATTACCGGAAAGAATAATGAGCTTCCTAAAACATCAGGAGCCTCGGCTAATGGAGTTTATTCTAAGAGGTATGCTGATCATTCTTTAGTACTTTTGGCCTTTGCATGTGGAATTGAAGTTGACTCTTTGGATTTAGAAAAGACCTGGGGGAAGGGCAGGGATATTGTAGGAAGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

215

Amino Acids

23.02

Weight (kDa)

6.71

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR	PF07777	1 - 101	6e-29	G-box binding protein MFMR
MFMR_assoc	PF16596	140 - 178	3.4e-14	Disordered region downstream of MFMR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32150 AT2G35530
fragaria_vesca	FvH4_5g23200 FvH4_5g23200
malus_domestica	MD06G1026900.v1.1 MD16G1279200.v1.1
prunus_persica	Prupe.5G027000_v2.0.a1
pyrus_communis	pycom06g02210 pycom16g24960
rosa_chinensis	RchiOBHm_Chr7g0212131
rosa_laevigata	RLG00000002925
rosa_multiflora	Rmu_sc0002283.1_g000045 Rmu_sc0013167.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247090
rosa_rugosa	Rorug07G0131200 Rorug07G0131200 Rorug07G0131300
rosa_samantha	Rh7AG264300 Rh7BG258200 Rh7CG280800 Rh7DG270700
rosa_wichuraiana	Rw7G022550 Rw7G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	125
AclWI	GGATC	2 cut(s)	316, 359
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	2 cut(s)	238, 558
AfeI	AGCGCT	1 cut(s)	100
AfiI	CCNNNNNNNGG	3 cut(s)	158, 233, 275
AgsI	TTSAA	2 cut(s)	52, 584
AjnI	CCWGG	3 cut(s)	376, 450, 611
AluBI	AGCT	4 cut(s)	29, 185, 459, 490
AluI	AGCT	4 cut(s)	29, 185, 459, 490
AlwI	GGATC	2 cut(s)	316, 359
Aor13HI	TCCGGA	1 cut(s)	125
Aor51HI	AGCGCT	1 cut(s)	100
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	4 cut(s)	9, 79, 381, 456
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	2 cut(s)	179, 185
AvaII	GGWCC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	59
BbvI	GCAGC	4 cut(s)	21, 91, 393, 468
BccI	CCATC	4 cut(s)	10, 301, 389, 412
BciT130I	CCWGG	3 cut(s)	378, 452, 613
BciVI	GTATCC	1 cut(s)	276
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	306
BfaI	CTAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	102
BfuI	GTATCC	1 cut(s)	276
BisI	GCNGC	4 cut(s)	10, 80, 382, 457
BlsI	GCNGC	4 cut(s)	11, 81, 383, 458
BmcAI	AGTACT	1 cut(s)	558
Bme1390I	CCNGG	4 cut(s)	306, 378, 452, 613
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	508
BmrFI	CCNGG	4 cut(s)	306, 378, 452, 613
BmsI	GCATC	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	4 cut(s)	271, 451, 510, 612
BsaWI	WCCGGW	2 cut(s)	125, 473
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 68, 76, 98
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 233, 275
Bse3DI	GCAATG	1 cut(s)	267
BseAI	TCCGGA	1 cut(s)	125
BseBI	CCWGG	3 cut(s)	378, 452, 613
BseDI	CCNNGG	4 cut(s)	271, 451, 510, 612
BseGI	GGATG	2 cut(s)	289, 293
BseLI	CCNNNNNNNGG	3 cut(s)	158, 233, 275
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	86, 399
BseRI	GAGGAG	1 cut(s)	231
BseXI	GCAGC	4 cut(s)	21, 91, 393, 468
BshFI	GGCC	1 cut(s)	566
BsiSI	CCGG	3 cut(s)	126, 305, 474
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	3 cut(s)	158, 233, 275
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	566
Bsp13I	TCCGGA	1 cut(s)	125
Bsp143I	GATC	5 cut(s)	308, 351, 429, 437, 544
Bsp19I	CCATGG	1 cut(s)	271
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	2 cut(s)	85, 400
BspEI	TCCGGA	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	508
BspPI	GGATC	2 cut(s)	316, 359
BsrDI	GCAATG	1 cut(s)	267
BssECI	CCNNGG	4 cut(s)	271, 451, 510, 612
BssMI	GATC	5 cut(s)	308, 351, 429, 437, 544
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	3 cut(s)	378, 452, 613
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	634
BstACI	GRCGYC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	3 cut(s)	72, 408, 531
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	289, 293
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	5 cut(s)	311, 354, 432, 440, 547
BstMBI	GATC	5 cut(s)	308, 351, 429, 437, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 456
BstNI	CCWGG	3 cut(s)	378, 452, 613
BstNSI	RCATGY	1 cut(s)	576
BstSCI	CCNGG	4 cut(s)	304, 376, 450, 611
BstV1I	GCAGC	4 cut(s)	21, 91, 393, 468
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	308
BstXI	CCANNNNNNTGG	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	308
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	566
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	289, 293
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	123
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	237, 557
CviAII	CATG	5 cut(s)	158, 272, 298, 466, 573
CviQI	GTAC	2 cut(s)	237, 557
DdeI	CTNAG	3 cut(s)	72, 408, 531
DpnI	GATC	5 cut(s)	310, 353, 431, 439, 546
DpnII	GATC	5 cut(s)	308, 351, 429, 437, 544
Eam1104I	CTCTTC	1 cut(s)	634
EarI	CTCTTC	1 cut(s)	634
Eco130I	CCWWGG	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	123
Eco47III	AGCGCT	1 cut(s)	100
EcoRII	CCWGG	3 cut(s)	376, 450, 611
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	5 cut(s)	161, 275, 301, 469, 576
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	5 cut(s)	157, 271, 297, 465, 572
FauNDI	CATATG	2 cut(s)	232, 253
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	4 cut(s)	10, 80, 382, 457
FokI	GGATG	2 cut(s)	276, 280
Fsp4HI	GCNGC	4 cut(s)	10, 80, 382, 457
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	4 cut(s)	10, 80, 382, 457
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	3 cut(s)	126, 305, 474
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	5 cut(s)	161, 275, 301, 469, 576
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	1 cut(s)	590
HpaII	CCGG	3 cut(s)	126, 305, 474
HphI	GGTGA	2 cut(s)	179, 185
Hpy166II	GTNNAC	2 cut(s)	401, 589
Hpy188I	TCNGA	1 cut(s)	409
Hpy188III	TCNNGA	4 cut(s)	74, 116, 126, 504
Hpy8I	GTNNAC	2 cut(s)	401, 589
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	37, 613
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	260, 572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 456
HpyF3I	CTNAG	3 cut(s)	72, 408, 531
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	5 cut(s)	161, 275, 301, 469, 576
HspAI	GCGC	1 cut(s)	99
Kpn2I	TCCGGA	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	5 cut(s)	308, 351, 429, 437, 544
LmnI	GCTCC	2 cut(s)	76, 506
Lsp1109I	GCAGC	4 cut(s)	21, 91, 393, 468
LweI	GCATC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	96
MaeIII	GTNAC	2 cut(s)	368, 423
MalI	GATC	5 cut(s)	310, 353, 431, 439, 546
MboI	GATC	5 cut(s)	308, 351, 429, 437, 544
MboII	GAAGA	1 cut(s)	64
MflI	RGATCY	1 cut(s)	308
MluCI	AATT	1 cut(s)	579
MlyI	GAGTC	1 cut(s)	584
MroI	TCCGGA	1 cut(s)	125
MseI	TTAA	2 cut(s)	111, 461
MslI	CAYNNNNRTG	2 cut(s)	202, 252
MspI	CCGG	3 cut(s)	126, 305, 474
MspR9I	CCNGG	4 cut(s)	306, 378, 452, 613
MvaI	CCWGG	3 cut(s)	378, 452, 613
MwoI	GCNNNNNNNGC	2 cut(s)	223, 456
NciI	CCSGG	1 cut(s)	306
NcoI	CCATGG	1 cut(s)	271
NdeI	CATATG	2 cut(s)	232, 253
NdeII	GATC	5 cut(s)	308, 351, 429, 437, 544
NlaIII	CATG	5 cut(s)	161, 275, 301, 469, 576
NlaIV	GGNNCC	1 cut(s)	508
NmeAIII	GCCGAG	1 cut(s)	491
NspI	RCATGY	1 cut(s)	576
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	4 cut(s)	11, 81, 383, 458
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
Psp6I	CCWGG	3 cut(s)	376, 450, 611
PspGI	CCWGG	3 cut(s)	376, 450, 611
PspN4I	GGNNCC	1 cut(s)	508
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	308
RsaI	GTAC	2 cut(s)	238, 558
RsaNI	GTAC	2 cut(s)	237, 557
RseI	CAYNNNNRTG	2 cut(s)	202, 252
SaqAI	TTAA	2 cut(s)	111, 461
SatI	GCNGC	4 cut(s)	10, 80, 382, 457
Sau3AI	GATC	5 cut(s)	308, 351, 429, 437, 544
Sau96I	GGNCC	1 cut(s)	123
ScaI	AGTACT	1 cut(s)	558
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	4 cut(s)	306, 378, 452, 613
SetI	ASST	7 cut(s)	31, 187, 379, 461, 492, 539, 614
SfaNI	GCATC	1 cut(s)	179
SinI	GGWCC	1 cut(s)	123
SmiMI	CAYNNNNRTG	2 cut(s)	202, 252
Sse9I	AATT	1 cut(s)	579
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	4 cut(s)	304, 376, 450, 611
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	109
TasI	AATT	1 cut(s)	579
TatI	WGTACW	1 cut(s)	556
Tru1I	TTAA	2 cut(s)	111, 461
Tru9I	TTAA	2 cut(s)	111, 461
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	4 cut(s)	9, 79, 381, 456
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	123
XceI	RCATGY	1 cut(s)	576
XspI	CTAG	1 cut(s)	96
ZrmI	AGTACT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.