Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008553

Physical Location & Seq

Genomic Coordinates Reverse (-)

10374981 .. 10376840

Gene Structure 1860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0131200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCGAACACCGCTATGATCAGAACCGTCGTCGGCATTATCGGTAATATCATCTCGTTGGGTTTGTTTCTTTCTCCAATTCCAACTTTTGTGAAGATTGTCAAGCAAAAATCAGTAGCAGATTTCAAGCCAGATCCTTATCTAGCAACTCTGCTCAATTGTGCCGTCTGGGTTTTTTATGGAATGCCATTTGTTCATCCTGATAGCACCCTTGTCTGGACAATCAATGGTGCTGGTTTCATTATCGAATCCGCCTATATTGTCATCTTCATATTATACTCCCCTGGATCAAAACGTAGAAGGATCTTCATCGTTCTTGTGGTTGAAGCTGCCTTCTTTGCTGTTGTGGTTTTAGTCAACATGCTCGCTTTTCATACCACAAAAACCCGAACTCTGATAGTTGGAATCATCTGTATCGTCTTCAATATCCTTATGTATGCTTCACCATTGACGGTCATGAAAATGGTGATCAAGACAAAGAGTGTCAAATACATGCCATTTTATCTTTCATTAGCCAACTTCTGTAATGGAATTGTTTGGCTTATTTACGCGCTTCTCAAATTTGATATCAATATTCTGCTTCCCAATGGGTTGGGAGCTCTATCTGGCTTGGTGCAACTCATTCTATACGCTACATTCTACAAGACCACCCGATGGGAAGATGACGACGACGATCAGAAGTCACGATCAGAAGTCCAGCTCTCGAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

237

Amino Acids

26.57

Weight (kDa)

9.32

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 95	2.1e-21	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 216	3.5e-24	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32150 AT2G35530
fragaria_vesca	FvH4_5g23200 FvH4_5g23200
malus_domestica	MD06G1026900.v1.1 MD16G1279200.v1.1
prunus_persica	Prupe.5G027000_v2.0.a1
pyrus_communis	pycom06g02210 pycom16g24960
rosa_chinensis	RchiOBHm_Chr7g0212131
rosa_laevigata	RLG00000002925
rosa_multiflora	Rmu_sc0002283.1_g000045 Rmu_sc0013167.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247090
rosa_rugosa	Rorug07G0131200 Rorug07G0131200 Rorug07G0131300
rosa_samantha	Rh7AG264300 Rh7BG258200 Rh7CG280800 Rh7DG270700
rosa_wichuraiana	Rw7G022550 Rw7G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	654
AccII	CGCG	1 cut(s)	551
AciI	CCGC	2 cut(s)	12, 252
AclWI	GGATC	3 cut(s)	128, 295, 311
AcsI	RAATTY	1 cut(s)	560
AfiI	CCNNNNNNNGG	2 cut(s)	216, 654
AgsI	TTSAA	3 cut(s)	127, 326, 424
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	3 cut(s)	329, 599, 700
AluI	AGCT	3 cut(s)	329, 599, 700
Alw21I	GWGCWC	1 cut(s)	601
AlwI	GGATC	3 cut(s)	128, 295, 311
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	553
AsuHPI	GGTGA	2 cut(s)	435, 478
BanII	GRGCYC	1 cut(s)	601
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	648
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	285
BclI	TGATCA	2 cut(s)	18, 468
BfaI	CTAG	1 cut(s)	143
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	412
BsaBI	GATNNNNATC	2 cut(s)	138, 308
BsaJI	CCNNGG	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 654
Bse8I	GATNNNNATC	2 cut(s)	138, 308
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	2 cut(s)	138, 308
BseLI	CCNNNNNNNGG	2 cut(s)	216, 654
BseXI	GCAGC	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	551
BsiHKAI	GWGCWC	1 cut(s)	601
BslI	CCNNNNNNNGG	2 cut(s)	216, 654
BsmI	GAATGC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp143I	GATC	7 cut(s)	18, 133, 287, 303, 468, 673, 686
BspACI	CCGC	2 cut(s)	12, 252
BspFNI	CGCG	1 cut(s)	551
BspHI	TCATGA	1 cut(s)	456
BspPI	GGATC	3 cut(s)	128, 295, 311
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	7 cut(s)	18, 133, 287, 303, 468, 673, 686
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	28, 454
BstC8I	GCNNGC	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	551
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	7 cut(s)	21, 136, 290, 306, 471, 676, 689
BstMBI	GATC	7 cut(s)	18, 133, 287, 303, 468, 673, 686
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 338
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	2 cut(s)	364, 496
BstSCI	CCNGG	1 cut(s)	283
BstUI	CGCG	1 cut(s)	551
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	2 cut(s)	133, 303
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstYI	RGATCY	2 cut(s)	133, 303
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	366
CciI	TCATGA	1 cut(s)	456
CfoI	GCGC	1 cut(s)	553
CviAII	CATG	3 cut(s)	361, 457, 493
CviJI	RGCY	7 cut(s)	130, 329, 515, 541, 599, 609, 700
CviKI_1	RGCY	7 cut(s)	130, 329, 515, 541, 599, 609, 700
DpnI	GATC	7 cut(s)	20, 135, 289, 305, 470, 675, 688
DpnII	GATC	7 cut(s)	18, 133, 287, 303, 468, 673, 686
EciI	GGCGGA	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	601
Eco32I	GATATC	1 cut(s)	568
Eco53kI	GAGCTC	1 cut(s)	599
EcoICRI	GAGCTC	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	568
EcoT38I	GRGCYC	1 cut(s)	601
FaeI	CATG	3 cut(s)	364, 460, 496
FatI	CATG	3 cut(s)	360, 456, 492
FbaI	TGATCA	2 cut(s)	18, 468
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	183
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	1 cut(s)	330
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	3 cut(s)	364, 460, 496
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	2 cut(s)	248, 405
HphI	GGTGA	2 cut(s)	435, 478
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	4 cut(s)	23, 396, 678, 691
Hpy188III	TCNNGA	6 cut(s)	200, 217, 457, 472, 684, 703
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	4 cut(s)	32, 35, 671, 674
HpyAV	CCTTC	2 cut(s)	294, 343
HpyCH4III	ACNGT	2 cut(s)	28, 454
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 338
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	3 cut(s)	364, 460, 496
HspAI	GCGC	1 cut(s)	551
Ksp22I	TGATCA	2 cut(s)	18, 468
Kzo9I	GATC	7 cut(s)	18, 133, 287, 303, 468, 673, 686
LmnI	GCTCC	1 cut(s)	596
LpnPI	CCDG	9 cut(s)	144, 154, 202, 213, 219, 270, 297, 591, 710
Lsp1109I	GCAGC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	1 cut(s)	681
MalI	GATC	7 cut(s)	20, 135, 289, 305, 470, 675, 688
MboI	GATC	7 cut(s)	18, 133, 287, 303, 468, 673, 686
MboII	GAAGA	5 cut(s)	106, 259, 298, 412, 671
MfeI	CAATTG	1 cut(s)	157
MflI	RGATCY	2 cut(s)	133, 303
MhlI	GDGCHC	1 cut(s)	601
MluCI	AATT	4 cut(s)	78, 157, 531, 560
MmeI	TCCRAC	2 cut(s)	107, 382
MslI	CAYNNNNRTG	2 cut(s)	14, 461
MspR9I	CCNGG	1 cut(s)	285
MunI	CAATTG	1 cut(s)	157
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	551
MwoI	GCNNNNNNNGC	2 cut(s)	11, 338
NdeII	GATC	7 cut(s)	18, 133, 287, 303, 468, 673, 686
NlaIII	CATG	3 cut(s)	364, 460, 496
NmuCI	GTSAC	1 cut(s)	681
NspI	RCATGY	2 cut(s)	364, 496
PagI	TCATGA	1 cut(s)	456
PctI	GAATGC	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	248, 405
PflMI	CCANNNNNTGG	1 cut(s)	654
PkrI	GCNGC	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	133, 303
RseI	CAYNNNNRTG	2 cut(s)	14, 461
SacI	GAGCTC	1 cut(s)	601
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	7 cut(s)	18, 133, 287, 303, 468, 673, 686
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	601
SetI	ASST	4 cut(s)	298, 331, 601, 702
SmiMI	CAYNNNNRTG	2 cut(s)	14, 461
Sse9I	AATT	4 cut(s)	78, 157, 531, 560
SsiI	CCGC	2 cut(s)	12, 252
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	1 cut(s)	143
SstI	GAGCTC	1 cut(s)	601
StyD4I	CCNGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	28, 454
TaiI	ACGT	1 cut(s)	298
TaqI	TCGA	2 cut(s)	246, 704
TasI	AATT	4 cut(s)	78, 157, 531, 560
TfiI	GAWTC	2 cut(s)	248, 405
TseFI	GTSAC	1 cut(s)	681
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	681
TspDTI	ATGAA	7 cut(s)	185, 229, 259, 298, 362, 473, 498
Van91I	CCANNNNNTGG	1 cut(s)	654
XapI	RAATTY	1 cut(s)	560
XceI	RCATGY	2 cut(s)	364, 496
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.