Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008553

Physical Location & Seq

Genomic Coordinates Forward (+)

10379802 .. 10380498

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0131300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGTCATGGAGATTGTTATCTCTGTGATTCTACTGTTTGTGGGGATTGCTGTTTTGGTGGTCATTCATATTTGTATAGTTGGGAGAACATTCAATGGAGGCAGTAACATTCAAGGTGTTGGTATGGTGGTTCAAAGAAGAAGCCTTGGGATGAAAAGGATGTCCATTGAGGAGTTGAATATGCTTCCTTGCTTTGACTACATGGCAGGAGAGAAAGGGAGTACTGCTAGCCCTGTGGAATGTGCAGTTTGTTTGGAAAATATCAAGGAGGGCGAAAAGTGCAGGTTGTTGCCAAATTGCGGGCACAGCTTCCATGCTCAATGCATAGACTCGTGGTTGTTGAAGACGCCGGTTTGTCCAGTATGCCGGAGTTGTGTCAATCGTCCAAAGATTGATGTGAGTGTCGGTGAGGAAGCTAGTGTTGCAGTGATCTTGATATTAGCTTTTCACCACCTGAATTCAGACAACATTCGAGGCAAAGGCTTTCTCGCTTTGCCTCTTTTCTATGTTTTGCCGAAAAGAACTCGATGCTGGTTCTTTGCCAATAGGCATGTTGTGTTTGTGGTTGAGGTGGTTCATTATGTTTGTGTTGTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

199

Amino Acids

22.06

Weight (kDa)

8.27

Isoelectric Point (pI)

59.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	80 - 123	6.9e-14	Ring finger domain
zf-RING_11	PF17123	80 - 109	6.1e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	80 - 122	8.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	81 - 122	9.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	81 - 120	4.2e-06	RING-type zinc-finger
zf-rbx1	PF12678	83 - 123	1.8e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32150 AT2G35530
fragaria_vesca	FvH4_5g23200 FvH4_5g23200
malus_domestica	MD06G1026900.v1.1 MD16G1279200.v1.1
prunus_persica	Prupe.5G027000_v2.0.a1
pyrus_communis	pycom06g02210 pycom16g24960
rosa_chinensis	RchiOBHm_Chr7g0212131
rosa_laevigata	RLG00000002925
rosa_multiflora	Rmu_sc0002283.1_g000045 Rmu_sc0013167.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247090
rosa_rugosa	Rorug07G0131200 Rorug07G0131200 Rorug07G0131300
rosa_samantha	Rh7AG264300 Rh7BG258200 Rh7CG280800 Rh7DG270700
rosa_wichuraiana	Rw7G022550 Rw7G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	273
AciI	CCGC	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	457
AcyI	GRCGYC	1 cut(s)	347
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	5 cut(s)	94, 113, 134, 178, 343
AluBI	AGCT	3 cut(s)	309, 416, 443
AluI	AGCT	3 cut(s)	309, 416, 443
ApoI	RAATTY	1 cut(s)	457
AsuHPI	GGTGA	2 cut(s)	419, 440
AsuNHI	GCTAGC	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	306
BauI	CACGAG	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	350
BfaI	CTAG	2 cut(s)	228, 417
BfuAI	ACCTGC	1 cut(s)	273
BmcAI	AGTACT	1 cut(s)	223
BmsI	GCATC	1 cut(s)	518
BmtI	GCTAGC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	350
BsaBI	GATNNNNATC	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse118I	RCCGGY	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	359
Bse8I	GATNNNNATC	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	2 cut(s)	156, 165
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	306
BsgI	GTGCAG	2 cut(s)	264, 301
BsiSI	CCGG	2 cut(s)	350, 367
BslI	CCNNNNNNNGG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	429
BspACI	CCGC	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	273
BspOI	GCTAGC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	1 cut(s)	429
BssNI	GRCGYC	1 cut(s)	347
BssSI	CACGAG	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	145
Bst2BI	CACGAG	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	229, 302
BstF5I	GGATG	2 cut(s)	156, 165
BstKTI	GATC	1 cut(s)	432
BstMBI	GATC	1 cut(s)	429
BstMWI	GCNNNNNNNGC	3 cut(s)	279, 306, 422
BstNSI	RCATGY	1 cut(s)	554
BstSLI	GKGCMC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	156, 165
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	432
BveI	ACCTGC	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	229, 302
Cfr10I	RCCGGY	1 cut(s)	349
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	4 cut(s)	7, 202, 314, 551
CviJI	RGCY	6 cut(s)	144, 231, 309, 416, 443, 483
CviKI_1	RGCY	6 cut(s)	144, 231, 309, 416, 443, 483
CviQI	GTAC	1 cut(s)	222
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	145
EcoT22I	ATGCAT	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	145
FaeI	CATG	4 cut(s)	10, 205, 317, 554
FatI	CATG	4 cut(s)	6, 201, 313, 550
FauI	CCCGC	1 cut(s)	293
FokI	GGATG	2 cut(s)	163, 172
FspBI	CTAG	2 cut(s)	228, 417
HapII	CCGG	2 cut(s)	350, 367
HgaI	GACGC	1 cut(s)	355
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	4 cut(s)	10, 205, 317, 554
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	2 cut(s)	28, 329
HpaII	CCGG	2 cut(s)	350, 367
HphI	GGTGA	2 cut(s)	419, 440
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	1 cut(s)	463
Hpy188III	TCNNGA	1 cut(s)	433
Hpy8I	GTNNAC	1 cut(s)	595
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	4 cut(s)	245, 282, 324, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	279, 306, 422
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	4 cut(s)	10, 205, 317, 554
Kzo9I	GATC	1 cut(s)	429
LpnPI	CCDG	8 cut(s)	192, 246, 268, 363, 372, 380, 467, 517
LweI	GCATC	1 cut(s)	518
MaeI	CTAG	2 cut(s)	228, 417
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	431
MboI	GATC	1 cut(s)	429
MboII	GAAGA	2 cut(s)	150, 355
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	2 cut(s)	295, 457
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	7 cut(s)	92, 163, 262, 403, 467, 507, 562
Mph1103I	ATGCAT	1 cut(s)	326
MspI	CCGG	2 cut(s)	350, 367
MwoI	GCNNNNNNNGC	3 cut(s)	279, 306, 422
NdeII	GATC	1 cut(s)	429
NheI	GCTAGC	1 cut(s)	227
NlaIII	CATG	4 cut(s)	10, 205, 317, 554
NsiI	ATGCAT	1 cut(s)	326
NspI	RCATGY	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	429
ScaI	AGTACT	1 cut(s)	223
SchI	GAGTC	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	7 cut(s)	118, 287, 311, 418, 445, 456, 573
SfaNI	GCATC	1 cut(s)	518
Sse9I	AATT	2 cut(s)	295, 457
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	2 cut(s)	228, 417
StyI	CCWWGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	472, 526
TasI	AATT	2 cut(s)	295, 457
TatI	WGTACW	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	28
TscAI	CASTG	1 cut(s)	432
TspDTI	ATGAA	3 cut(s)	56, 167, 566
TspRI	CASTG	1 cut(s)	432
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	554
XspI	CTAG	2 cut(s)	228, 417
ZrmI	AGTACT	1 cut(s)	223
Zsp2I	ATGCAT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.