Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008553

Physical Location & Seq

Genomic Coordinates Reverse (-)

26612917 .. 26614703

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G022550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCTTTAGGTCTGACCTTCAACGTGTATGATATTGATGGGATGAAAGAGAGCTTAAAAGAAAGCGGAGAAAGCAGTCAAATAGGGAATCTGCTCGTCATTCTAGGTTGCGAAGCAGGTAATTCCGTAATTGCTGAATGTGATGAGCTGGCCCAGCGTGCTGAAGTCTTAAAAGATGAAAATGCCACACTCAGATTAGAAGTTAACCGCATCCGGAGTGAGTATGAGCAGCTTCTTTCAGAGAATGCCTCCTTGAAGGAAAGGCTCGGGGAAATTCCTGGGCATGAAGATCTGAGGTCTGGTAGAAGTGACCAACATTTGAGCAATGACACTAATCAGATTGCACTAGCAGAACTGCATGGTGGTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

123

Amino Acids

13.51

Weight (kDa)

4.61

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	45 - 82	7.2e-07	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32150 AT2G35530
fragaria_vesca	FvH4_5g23200 FvH4_5g23200
malus_domestica	MD06G1026900.v1.1 MD16G1279200.v1.1
prunus_persica	Prupe.5G027000_v2.0.a1
pyrus_communis	pycom06g02210 pycom16g24960
rosa_chinensis	RchiOBHm_Chr7g0212131
rosa_laevigata	RLG00000002925
rosa_multiflora	Rmu_sc0002283.1_g000045 Rmu_sc0013167.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247090
rosa_rugosa	Rorug07G0131200 Rorug07G0131200 Rorug07G0131300
rosa_samantha	Rh7AG264300 Rh7BG258200 Rh7CG280800 Rh7DG270700
rosa_wichuraiana	Rw7G022550 Rw7G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	107
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	2 cut(s)	66, 208
AcsI	RAATTY	1 cut(s)	273
AcuI	CTGAAG	1 cut(s)	183
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	22, 256
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	3 cut(s)	54, 148, 232
AluI	AGCT	3 cut(s)	54, 148, 232
Ama87I	CYCGRG	1 cut(s)	266
Aor13HI	TCCGGA	1 cut(s)	213
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	1 cut(s)	32
BcgI	CGANNNNNNTGC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	279
BfaI	CTAG	3 cut(s)	104, 347, 370
BfuAI	ACCTGC	1 cut(s)	107
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	219
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BsaJI	CCNNGG	1 cut(s)	278
BsaWI	WCCGGW	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	331
BseAI	TCCGGA	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	2 cut(s)	48, 210
BseMI	GCAATG	1 cut(s)	331
BseMII	CTCAG	2 cut(s)	205, 284
BseXI	GCAGC	1 cut(s)	241
BseYI	CCCAGC	1 cut(s)	153
BshFI	GGCC	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	214
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	266
Bsp13I	TCCGGA	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	2 cut(s)	66, 208
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	204, 285
BspEI	TCCGGA	1 cut(s)	213
BspMI	ACCTGC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	150, 159
BstDEI	CTNAG	2 cut(s)	191, 293
BstF5I	GGATG	2 cut(s)	48, 210
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 154, 158
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	48, 210
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	2 cut(s)	150, 159
Cfr13I	GGNCC	1 cut(s)	151
CviAII	CATG	2 cut(s)	284, 359
CviJI	RGCY	6 cut(s)	5, 54, 148, 152, 232, 265
CviKI_1	RGCY	6 cut(s)	5, 54, 148, 152, 232, 265
DdeI	CTNAG	2 cut(s)	191, 293
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	277
FaeI	CATG	2 cut(s)	287, 362
FaiI	YATR	4 cut(s)	30, 225, 285, 360
FatI	CATG	2 cut(s)	283, 358
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	2 cut(s)	55, 197
Fsp4HI	GCNGC	1 cut(s)	230
FspBI	CTAG	3 cut(s)	104, 347, 370
GluI	GCNGC	1 cut(s)	230
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	214
Hin1II	CATG	2 cut(s)	287, 362
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	88
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	5 cut(s)	15, 194, 241, 294, 339
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	28, 250
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	344, 358
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 154, 158
HpyF3I	CTNAG	2 cut(s)	191, 293
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	287, 362
Kpn2I	TCCGGA	1 cut(s)	213
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	289
LpnPI	CCDG	7 cut(s)	102, 134, 167, 227, 264, 285, 291
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	3 cut(s)	104, 347, 370
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	1 cut(s)	299
MflI	RGATCY	1 cut(s)	289
MluCI	AATT	3 cut(s)	121, 129, 273
MnlI	CCTC	2 cut(s)	259, 288
MroI	TCCGGA	1 cut(s)	213
MseI	TTAA	3 cut(s)	56, 170, 204
MspI	CCGG	1 cut(s)	214
MspR9I	CCNGG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	72, 154, 158
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	2 cut(s)	287, 362
NmuCI	GTSAC	1 cut(s)	308
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	289
SaqAI	TTAA	3 cut(s)	56, 170, 204
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	279
SetI	ASST	9 cut(s)	13, 20, 27, 56, 109, 121, 150, 234, 299
SfaNI	GCATC	1 cut(s)	219
Sse9I	AATT	3 cut(s)	121, 129, 273
SsiI	CCGC	2 cut(s)	66, 208
SspMI	CTAG	3 cut(s)	104, 347, 370
StyD4I	CCNGG	1 cut(s)	277
TaiI	ACGT	1 cut(s)	27
TasI	AATT	3 cut(s)	121, 129, 273
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	3 cut(s)	56, 170, 204
Tru9I	TTAA	3 cut(s)	56, 170, 204
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	3 cut(s)	59, 192, 300
TspGWI	ACGGA	1 cut(s)	115
XapI	RAATTY	1 cut(s)	273
XspI	CTAG	3 cut(s)	104, 347, 370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.