Rroxscaffold_3G00247090
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
40411167 .. 40418418
7252 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00247090.1

Sequence Viewer

Length: 1236 bp
ATGGGTAGCAGCGAGATGGATAAACCAGCTAAAGAGAAAGAGAAGGAGTTGAAGACGACGCCTCCTACTACTCAGGAGCAGCAGTCTGCTACCACTAGCGCTGGCACTGTTAATCCTGATTGGTCCGGATTTCAGGCATACTCTCCTATGCCTCCACATGGGTTTATGGCATCAAGCCCCCAAGCTCACCCTCACCCATATATGTGGGGCGTTCAGCATATTATGCCTCCATATGGTACTCCTCCACACCCATATGTTGCAATGTATCCCCATGGTGGCTTATATGCTCATCCATCCATGCCTCCGGGATCTTACCCTTTCAGCCCTTTTGCTATGCCCTCGCCAAATGGGATCGTAGAGGCTTCTGGTAACACACCTGGCAGCATAGAAGCAGATGGTAAGCCATCTGAGGCAAAGGAAAAGTTACCGATCAAAAGATCAAAAGGAAGCCTGGGCAGCTTAAACATGATTACTGGAAAGAATAATGAGCTTCCTAAAACATCAGGAGCCTCGGCTAATGGAGTTTATTCTAAGAGTGCTGAGAGTGGCAGTGAAGGCACAAGTGAAGGAAGCGATGCAAATTCTCAGAGTGACTCACAACTGAAGTCAGGAGGAAGGGGAGATTCTTTGGAAGGTGATGCATCTCAGAATGGTGGTTCTGCACATAATTCTCAAAATGGAACACCAAATTCTCACGCAGTGTTGAACCCCACAATGGCAATTGTGCCAATGACAGCTGGTGGTGCTCCCCTTGCCGTTTCTGGGCCTGCAACAAACCTAAATATTGGGATGGACTATTGGGGTGCCCCATCTTCTGCCATGCCTGCAATCCGTGGGAAGGTACCCACTACTCCAGTTGCTGGAGGACTAGTTACTCCAGGATCTCGGGATGGTGCTCAATCACAGCTTTGGTTACAAGATGAAAGAGAGCTTAAAAGACAGCGGAGAAAGCAGTCAAATAGGGAATCTGCTCGTCGTTCTAGGTTGCGCAAGCAGGCTGAATGTGATGAGCTGGCCCAGCGTGCTGAAGTCTTAAAAGATGAAAATGCCACACTCAGATCAGAAGTTAACCGCATCAGGAGTGAGTATGAGCAGCTTCTTTCAGAGAATGCCTCCCTGAAGGAGAGGCTCGGGGAAATTCCTGGGCATGAAGATCTGAGGTCTGGTAGAAGTGACCAACATTTGAGCAATGACACTAATCAGATTGCACAAACTGAACTGCATGGTGGTCACTAG

Protein Analysis

411

Amino Acids

43.71

Weight (kDa)

6.37

Isoelectric Point (pI)

60.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFMR PF07777 1 - 101 2.3e-28 G-box binding protein MFMR
MFMR_assoc PF16596 140 - 273 1.3e-52 Disordered region downstream of MFMR
bZIP_1 PF00170 308 - 370 1e-20 bZIP transcription factor
bZIP_2 PF07716 310 - 360 2.8e-07 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 989
Acc65I GGTACC 1 cut(s) 841
AccB1I GGYRCC 2 cut(s) 803, 841
AccB7I CCANNNNNTGG 1 cut(s) 860
AccIII TCCGGA 1 cut(s) 125
AciI CCGC 2 cut(s) 943, 1072
AclWI GGATC 3 cut(s) 316, 359, 889
AcsI RAATTY 3 cut(s) 580, 688, 1137
AcuI CTGAAG 3 cut(s) 623, 1047, 1139
AcyI GRCGYC 1 cut(s) 59
AdeI CACNNNGTG 1 cut(s) 700
AfaI GTAC 2 cut(s) 238, 843
AfeI AGCGCT 1 cut(s) 100
AfiI CCNNNNNNNGG 7 cut(s) 158, 233, 275, 715, 762, 838, 860
AgsI TTSAA 2 cut(s) 52, 706
AhlI ACTAGT 1 cut(s) 868
AjnI CCWGG 4 cut(s) 376, 450, 877, 1141
AluBI AGCT 9 cut(s) 29, 185, 459, 490, 737, 907, 931, 1012, 1096
AluI AGCT 9 cut(s) 29, 185, 459, 490, 737, 907, 931, 1012, 1096
Alw21I GWGCWC 2 cut(s) 748, 898
AlwI GGATC 3 cut(s) 316, 359, 889
AlwNI CAGNNNCTG 1 cut(s) 860
Ama87I CYCGRG 2 cut(s) 885, 1130
Aor13HI TCCGGA 1 cut(s) 125
Aor51HI AGCGCT 1 cut(s) 100
AoxI GGCC 2 cut(s) 764, 1014
ApeKI GCWGC 5 cut(s) 9, 79, 381, 456, 1093
ApoI RAATTY 3 cut(s) 580, 688, 1137
Asp718I GGTACC 1 cut(s) 841
AspLEI GCGC 2 cut(s) 101, 990
AspS9I GGNCC 3 cut(s) 123, 764, 1015
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 3 cut(s) 179, 185, 647
AvaI CYCGRG 2 cut(s) 885, 1130
AvaII GGWCC 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 808
BanI GGYRCC 2 cut(s) 803, 841
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 748, 898
BbvI GCAGC 5 cut(s) 21, 91, 393, 468, 1105
BccI CCATC 7 cut(s) 10, 301, 389, 412, 784, 817, 884
BceAI ACGGC 1 cut(s) 740
BciT130I CCWGG 4 cut(s) 378, 452, 879, 1143
BciVI GTATCC 1 cut(s) 276
BcnI CCSGG 1 cut(s) 306
BcuI ACTAGT 1 cut(s) 868
BfaI CTAG 4 cut(s) 96, 869, 981, 1234
BfoI RGCGCY 1 cut(s) 102
BfuI GTATCC 1 cut(s) 276
BglII AGATCT 1 cut(s) 1153
BisI GCNGC 5 cut(s) 10, 80, 382, 457, 1094
BlsI GCNGC 5 cut(s) 11, 81, 383, 458, 1095
Bme1390I CCNGG 5 cut(s) 306, 378, 452, 879, 1143
Bme18I GGWCC 1 cut(s) 123
BmeT110I CYCGRG 2 cut(s) 885, 1130
BmgT120I GGNCC 3 cut(s) 123, 764, 1015
BmiI GGNNCC 3 cut(s) 508, 805, 843
BmrFI CCNGG 5 cut(s) 306, 378, 452, 879, 1143
BmsI GCATC 5 cut(s) 179, 565, 628, 650, 1083
BpiI GAAGAC 1 cut(s) 59
BplI GAGNNNNNCTC 2 cut(s) 1097, 1129
BpmI CTGGAG 3 cut(s) 837, 861, 882
BpuMI CCSGG 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 5 cut(s) 271, 451, 510, 832, 1142
BsaWI WCCGGW 1 cut(s) 125
BsaXI ACNNNNNCTCC 6 cut(s) 46, 68, 76, 98, 855, 885
Bsc4I CCNNNNNNNGG 7 cut(s) 158, 233, 275, 715, 762, 838, 860
Bse1I ACTGG 2 cut(s) 478, 854
Bse3DI GCAATG 2 cut(s) 267, 1195
BseAI TCCGGA 1 cut(s) 125
BseBI CCWGG 4 cut(s) 378, 452, 879, 1143
BseDI CCNNGG 5 cut(s) 271, 451, 510, 832, 1142
BseGI GGATG 4 cut(s) 289, 293, 795, 895
BseLI CCNNNNNNNGG 7 cut(s) 158, 233, 275, 715, 762, 838, 860
BseMI GCAATG 2 cut(s) 267, 1195
BseMII CTCAG 7 cut(s) 86, 399, 531, 599, 659, 1069, 1148
BseNI ACTGG 2 cut(s) 478, 854
BseRI GAGGAG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 808
BseXI GCAGC 5 cut(s) 21, 91, 393, 468, 1105
BseYI CCCAGC 1 cut(s) 1017
BsgI GTGCAG 1 cut(s) 645
BshFI GGCC 2 cut(s) 766, 1016
BshNI GGYRCC 2 cut(s) 803, 841
BsiHKAI GWGCWC 2 cut(s) 748, 898
BsiHKCI CYCGRG 2 cut(s) 885, 1130
BsiSI CCGG 2 cut(s) 126, 305
BslI CCNNNNNNNGG 7 cut(s) 158, 233, 275, 715, 762, 838, 860
BsmI GAATGC 1 cut(s) 1114
BsnI GGCC 2 cut(s) 766, 1016
BsoBI CYCGRG 2 cut(s) 885, 1130
Bsp1286I GDGCHC 3 cut(s) 748, 808, 898
Bsp13I TCCGGA 1 cut(s) 125
Bsp143I GATC 7 cut(s) 308, 351, 429, 437, 881, 1058, 1153
Bsp19I CCATGG 1 cut(s) 271
BspACI CCGC 2 cut(s) 943, 1072
BspANI GGCC 2 cut(s) 766, 1016
BspCNI CTCAG 7 cut(s) 85, 400, 532, 598, 658, 1068, 1149
BspEI TCCGGA 1 cut(s) 125
BspLI GGNNCC 3 cut(s) 508, 805, 843
BspPI GGATC 3 cut(s) 316, 359, 889
BspT107I GGYRCC 2 cut(s) 803, 841
BsrDI GCAATG 2 cut(s) 267, 1195
BsrI ACTGG 2 cut(s) 478, 854
BssECI CCNNGG 5 cut(s) 271, 451, 510, 832, 1142
BssMI GATC 7 cut(s) 308, 351, 429, 437, 881, 1058, 1153
BssNI GRCGYC 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 271
Bst2UI CCWGG 4 cut(s) 378, 452, 879, 1143
Bst4CI ACNGT 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 223
BstC8I GCNNGC 7 cut(s) 103, 768, 825, 992, 996, 1014, 1023
BstDEI CTNAG 8 cut(s) 72, 408, 531, 540, 585, 645, 1055, 1157
BstDSI CCRYGG 2 cut(s) 271, 832
BstF5I GGATG 4 cut(s) 289, 293, 795, 895
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 2 cut(s) 101, 990
BstKTI GATC 7 cut(s) 311, 354, 432, 440, 884, 1061, 1156
BstMBI GATC 7 cut(s) 308, 351, 429, 437, 881, 1058, 1153
BstMWI GCNNNNNNNGC 9 cut(s) 223, 456, 555, 743, 752, 824, 949, 1018, 1022
BstNI CCWGG 4 cut(s) 378, 452, 879, 1143
BstSCI CCNGG 5 cut(s) 304, 376, 450, 877, 1141
BstSLI GKGCMC 1 cut(s) 808
BstV1I GCAGC 5 cut(s) 21, 91, 393, 468, 1105
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 3 cut(s) 308, 881, 1153
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 3 cut(s) 308, 881, 1153
BsuI GTATCC 1 cut(s) 276
BsuRI GGCC 2 cut(s) 766, 1016
BtgI CCRYGG 2 cut(s) 271, 832
BtgZI GCGATG 1 cut(s) 588
BtsCI GGATG 4 cut(s) 289, 293, 795, 895
BtsI GCAGTG 2 cut(s) 556, 705
BtsIMutI CAGTG 3 cut(s) 105, 556, 705
Cac8I GCNNGC 7 cut(s) 103, 768, 825, 992, 996, 1014, 1023
CaiI CAGNNNCTG 1 cut(s) 860
CfoI GCGC 2 cut(s) 101, 990
Cfr13I GGNCC 3 cut(s) 123, 764, 1015
CseI GACGC 1 cut(s) 67
Csp6I GTAC 2 cut(s) 237, 842
CviAII CATG 7 cut(s) 158, 272, 298, 466, 820, 1148, 1223
CviQI GTAC 2 cut(s) 237, 842
DdeI CTNAG 8 cut(s) 72, 408, 531, 540, 585, 645, 1055, 1157
DpnI GATC 7 cut(s) 310, 353, 431, 439, 883, 1060, 1155
DpnII GATC 7 cut(s) 308, 351, 429, 437, 881, 1058, 1153
DraIII CACNNNGTG 1 cut(s) 700
Eco130I CCWWGG 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 123
Eco47III AGCGCT 1 cut(s) 100
Eco57I CTGAAG 3 cut(s) 623, 1047, 1139
Eco88I CYCGRG 2 cut(s) 885, 1130
EcoRII CCWGG 4 cut(s) 376, 450, 877, 1141
EcoT14I CCWWGG 1 cut(s) 271
EcoT22I ATGCAT 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 7 cut(s) 161, 275, 301, 469, 823, 1151, 1226
FatI CATG 7 cut(s) 157, 271, 297, 465, 819, 1147, 1222
FauNDI CATATG 2 cut(s) 232, 253
Fnu4HI GCNGC 5 cut(s) 10, 80, 382, 457, 1094
FokI GGATG 4 cut(s) 276, 280, 802, 902
Fsp4HI GCNGC 5 cut(s) 10, 80, 382, 457, 1094
FspBI CTAG 4 cut(s) 96, 869, 981, 1234
FspI TGCGCA 1 cut(s) 989
GlaI GCGC 2 cut(s) 100, 989
GluI GCNGC 5 cut(s) 10, 80, 382, 457, 1094
GsaI CCCAGC 1 cut(s) 1021
GsuI CTGGAG 3 cut(s) 837, 861, 882
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 2 cut(s) 766, 1016
HapII CCGG 2 cut(s) 126, 305
HgaI GACGC 1 cut(s) 67
HhaI GCGC 2 cut(s) 101, 990
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 7 cut(s) 161, 275, 301, 469, 823, 1151, 1226
Hin6I GCGC 2 cut(s) 99, 988
HinP1I GCGC 2 cut(s) 99, 988
HincII GTYRAC 1 cut(s) 1069
HindII GTYRAC 1 cut(s) 1069
HinfI GANTC 3 cut(s) 593, 623, 965
HpaI GTTAAC 1 cut(s) 1069
HpaII CCGG 2 cut(s) 126, 305
HphI GGTGA 3 cut(s) 179, 185, 647
Hpy166II GTNNAC 1 cut(s) 1069
Hpy188I TCNGA 8 cut(s) 409, 588, 648, 1058, 1063, 1105, 1158, 1203
Hpy188III TCNNGA 7 cut(s) 74, 116, 126, 504, 609, 887, 1078
Hpy8I GTNNAC 1 cut(s) 1069
Hpy99I CGWCG 2 cut(s) 61, 978
HpyAV CCTTC 7 cut(s) 37, 548, 560, 609, 626, 832, 1114
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 8 cut(s) 260, 578, 641, 662, 770, 827, 1208, 1222
HpyF10VI GCNNNNNNNGC 9 cut(s) 223, 456, 555, 743, 752, 824, 949, 1018, 1022
HpyF3I CTNAG 8 cut(s) 72, 408, 531, 540, 585, 645, 1055, 1157
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 7 cut(s) 161, 275, 301, 469, 823, 1151, 1226
HspAI GCGC 2 cut(s) 99, 988
Kpn2I TCCGGA 1 cut(s) 125
KpnI GGTACC 1 cut(s) 845
KspAI GTTAAC 1 cut(s) 1069
Kzo9I GATC 7 cut(s) 308, 351, 429, 437, 881, 1058, 1153
LmnI GCTCC 3 cut(s) 76, 506, 751
Lsp1109I GCAGC 5 cut(s) 21, 91, 393, 468, 1105
LweI GCATC 5 cut(s) 179, 565, 628, 650, 1083
MaeI CTAG 4 cut(s) 96, 869, 981, 1234
MaeIII GTNAC 7 cut(s) 368, 423, 590, 871, 912, 1172, 1229
MalI GATC 7 cut(s) 310, 353, 431, 439, 883, 1060, 1155
MboI GATC 7 cut(s) 308, 351, 429, 437, 881, 1058, 1153
MboII GAAGA 3 cut(s) 64, 804, 1163
MfeI CAATTG 1 cut(s) 720
MflI RGATCY 3 cut(s) 308, 881, 1153
MhlI GDGCHC 3 cut(s) 748, 808, 898
MluCI AATT 5 cut(s) 580, 667, 688, 720, 1137
MlyI GAGTC 1 cut(s) 587
Mph1103I ATGCAT 1 cut(s) 643
MroI TCCGGA 1 cut(s) 125
MseI TTAA 5 cut(s) 111, 461, 933, 1034, 1068
MslI CAYNNNNRTG 2 cut(s) 202, 252
MspA1I CMGCKG 2 cut(s) 737, 943
MspI CCGG 2 cut(s) 126, 305
MspR9I CCNGG 5 cut(s) 306, 378, 452, 879, 1143
MunI CAATTG 1 cut(s) 720
Mva1269I GAATGC 1 cut(s) 1114
MvaI CCWGG 4 cut(s) 378, 452, 879, 1143
MwoI GCNNNNNNNGC 9 cut(s) 223, 456, 555, 743, 752, 824, 949, 1018, 1022
NciI CCSGG 1 cut(s) 306
NcoI CCATGG 1 cut(s) 271
NdeI CATATG 2 cut(s) 232, 253
NdeII GATC 7 cut(s) 308, 351, 429, 437, 881, 1058, 1153
NlaIII CATG 7 cut(s) 161, 275, 301, 469, 823, 1151, 1226
NlaIV GGNNCC 3 cut(s) 508, 805, 843
NmeAIII GCCGAG 1 cut(s) 491
NmuCI GTSAC 3 cut(s) 590, 1172, 1229
NsbI TGCGCA 1 cut(s) 989
NsiI ATGCAT 1 cut(s) 643
PctI GAATGC 1 cut(s) 1114
PfeI GAWTC 2 cut(s) 623, 965
PflMI CCANNNNNTGG 1 cut(s) 860
PfoI TCCNGGA 2 cut(s) 304, 877
PkrI GCNGC 5 cut(s) 11, 81, 383, 458, 1095
PleI GAGTC 1 cut(s) 587
PpsI GAGTC 1 cut(s) 587
Psp6I CCWGG 4 cut(s) 376, 450, 877, 1141
PspFI CCCAGC 1 cut(s) 1017
PspGI CCWGG 4 cut(s) 376, 450, 877, 1141
PspN4I GGNNCC 3 cut(s) 508, 805, 843
PspPI GGNCC 3 cut(s) 123, 764, 1015
PstNI CAGNNNCTG 1 cut(s) 860
PsuI RGATCY 3 cut(s) 308, 881, 1153
PvuII CAGCTG 1 cut(s) 737
RsaI GTAC 2 cut(s) 238, 843
RsaNI GTAC 2 cut(s) 237, 842
RseI CAYNNNNRTG 2 cut(s) 202, 252
SaqAI TTAA 5 cut(s) 111, 461, 933, 1034, 1068
SatI GCNGC 5 cut(s) 10, 80, 382, 457, 1094
Sau3AI GATC 7 cut(s) 308, 351, 429, 437, 881, 1058, 1153
Sau96I GGNCC 3 cut(s) 123, 764, 1015
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 5 cut(s) 306, 378, 452, 879, 1143
SduI GDGCHC 3 cut(s) 748, 808, 898
SfaNI GCATC 5 cut(s) 179, 565, 628, 650, 1083
SinI GGWCC 1 cut(s) 123
SmiMI CAYNNNNRTG 2 cut(s) 202, 252
SpeI ACTAGT 1 cut(s) 868
Sse9I AATT 5 cut(s) 580, 667, 688, 720, 1137
SsiI CCGC 2 cut(s) 943, 1072
SspI AATATT 1 cut(s) 784
SspMI CTAG 4 cut(s) 96, 869, 981, 1234
StyD4I CCNGG 5 cut(s) 304, 376, 450, 877, 1141
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 1 cut(s) 109
TasI AATT 5 cut(s) 580, 667, 688, 720, 1137
TfiI GAWTC 2 cut(s) 623, 965
Tru1I TTAA 5 cut(s) 111, 461, 933, 1034, 1068
Tru9I TTAA 5 cut(s) 111, 461, 933, 1034, 1068
TscAI CASTG 3 cut(s) 112, 556, 705
TseFI GTSAC 3 cut(s) 590, 1172, 1229
TseI GCWGC 5 cut(s) 9, 79, 381, 456, 1093
Tsp45I GTSAC 3 cut(s) 590, 1172, 1229
TspDTI ATGAA 3 cut(s) 936, 1056, 1164
TspGWI ACGGA 1 cut(s) 821
TspRI CASTG 3 cut(s) 112, 556, 705
Van91I CCANNNNNTGG 1 cut(s) 860
VpaK11BI GGWCC 1 cut(s) 123
XapI RAATTY 3 cut(s) 580, 688, 1137
XspI CTAG 4 cut(s) 96, 869, 981, 1234
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.