Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008553

Physical Location & Seq

Genomic Coordinates Forward (+)

3324929 .. 3332435

Gene Structure 7507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1026900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGGTAGCAGAGAGATGGACAAACCTGCTAAAGAGAAAGAGAAGGAGACGAAGACAACACCTGCTACTACGCAGGAGCAGCCTGCGACTACTAGTACTGGCACTGTTAATCCTGACTGGTCGGGATTTCAGGCATATTCTCCAATACCTCCACATGGATTTATGGCCTCAAGTCCTCAAGCTCACCCGTATATGTGGGGGGTTCAGCATATTATGCCCCCATATGGTACCCCTCCACACCCATATGTTGCAATGTATCCCCATGGCGGGTTATATGCTCACCCGTCTATGCCTCCTGGATCTTATCCTTTTAGCCCGTTTGCTATGCCTACTCCAAATGGCATTGTAGAGGCTTCTGGTAACACACCTGGAAGCATGGAAGCAGATGGTAAGCCATCTGAGGTAAAGGAAAAATTACCAATAAAACGATCAAAGGGAAGCTTGGGCAGTTTGAATATGATTACAGGGAAGAATAACGAGCTTGGCAAAACATCAGGAGCCTCTGCTAATGGAGTTTATTCCAAAAGTGCTGAGAGTGCTAGTGATGGTACAAGTGAAGGAAGTGATGCAAATTCTCAGAGTGACTCCCAATTGAAGTCAGGGGGCAGGCAAGATTCTTTGGAAGGTGATGTATCTCAGAATGGCAGTTCAGCACATGGTTCCCAGAATGGAGCACCGCATACCATGTTGAATCAAACAATGGCCATCATGCCATTAACGGCTGCTGGTGCTCCTGGTGCTGTTTCTGGTCCTGCAACAAACTTAAATATTGGGATGGACTATTGGGGTGCTCCACCTTCTGCTGCCATGCCTGCAATGCGTGGGAAGATTCCAACTACTCCAGTATCAGCAGGAATAGTTACTGCTGGGTCTCGGGATAGTGTTCAGTCACAGATTCGGTTACAAGATGAGAGAGAGATGAAAAGACAGCGAAGAAAGCAGTCAAATAGGGAATCCGCTCGTCGATCTAGGTTGCGCAAGCAGGCGGAATGCGATGAGCTGGCCCAGCGTGCTGAAGTCTTAAAAGAAGAAAATAACACTCTAAGATCAGAAGTTAACCAGATCAGGAGCGAGTATGAGCAGCTTCTTTCAGAGAATGCTTCTCTAAAGGAGAGGCTTGGAGAAATTCCTGGTCATGGAGATATACGGTCTGCCAGAAGTGAACCACATTTGGGCAATGACACTAAACAGAATGCACATACAGAACAGCACGGTGGCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

408

Amino Acids

43.45

Weight (kDa)

6.91

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR	PF07777	1 - 98	6.1e-30	G-box binding protein MFMR
MFMR_assoc	PF16596	137 - 271	4.8e-56	Disordered region downstream of MFMR
bZIP_1	PF00170	304 - 366	1.2e-20	bZIP transcription factor
bZIP_2	PF07716	306 - 357	7.3e-08	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32150 AT2G35530
fragaria_vesca	FvH4_5g23200 FvH4_5g23200
malus_domestica	MD06G1026900.v1.1 MD16G1279200.v1.1
prunus_persica	Prupe.5G027000_v2.0.a1
pyrus_communis	pycom06g02210 pycom16g24960
rosa_chinensis	RchiOBHm_Chr7g0212131
rosa_laevigata	RLG00000002925
rosa_multiflora	Rmu_sc0002283.1_g000045 Rmu_sc0013167.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247090
rosa_rugosa	Rorug07G0131200 Rorug07G0131200 Rorug07G0131300
rosa_samantha	Rh7AG264300 Rh7BG258200 Rh7CG280800 Rh7DG270700
rosa_wichuraiana	Rw7G022550 Rw7G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
Acc16I	TGCGCA	1 cut(s)	977
Acc36I	ACCTGC	2 cut(s)	34, 70
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	227
AccBSI	CCGCTC	1 cut(s)	959
AciI	CCGC	4 cut(s)	267, 677, 957, 986
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	2 cut(s)	702, 1216
AcsI	RAATTY	2 cut(s)	571, 1125
AcuI	CTGAAG	1 cut(s)	1035
AfaI	GTAC	3 cut(s)	97, 229, 550
AfiI	CCNNNNNNNGG	6 cut(s)	155, 224, 266, 267, 1136, 1172
AgsI	TTSAA	3 cut(s)	454, 595, 691
AhlI	ACTAGT	1 cut(s)	92
AjnI	CCWGG	4 cut(s)	295, 367, 733, 1129
AluBI	AGCT	5 cut(s)	182, 441, 481, 1000, 1084
AluI	AGCT	5 cut(s)	182, 441, 481, 1000, 1084
Alw21I	GWGCWC	3 cut(s)	676, 733, 793
Alw26I	GTCTC	2 cut(s)	41, 876
AlwI	GGATC	1 cut(s)	307
Ama87I	CYCGRG	1 cut(s)	873
AoxI	GGCC	4 cut(s)	165, 702, 1002, 1216
ApeKI	GCWGC	4 cut(s)	79, 722, 803, 1081
ApoI	RAATTY	2 cut(s)	571, 1125
Asp718I	GGTACC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	978
AspS9I	GGNCC	2 cut(s)	749, 1003
AsuHPI	GGTGA	3 cut(s)	176, 272, 638
AvaI	CYCGRG	1 cut(s)	873
AvaII	GGWCC	1 cut(s)	749
BaeI	ACNNNNGTAYC	2 cut(s)	828, 861
BalI	TGGCCA	2 cut(s)	704, 1218
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	59
Bbv12I	GWGCWC	3 cut(s)	676, 733, 793
BbvI	GCAGC	4 cut(s)	91, 709, 790, 1093
BccI	CCATC	6 cut(s)	10, 380, 403, 539, 713, 769
BceAI	ACGGC	1 cut(s)	735
BciT130I	CCWGG	4 cut(s)	297, 369, 735, 1131
BciVI	GTATCC	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	41, 876
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	4 cut(s)	93, 540, 969, 1222
BfuAI	ACCTGC	2 cut(s)	34, 70
BfuI	GTATCC	1 cut(s)	267
BisI	GCNGC	4 cut(s)	80, 723, 804, 1082
BlsI	GCNGC	4 cut(s)	81, 724, 805, 1083
BmcAI	AGTACT	1 cut(s)	97
Bme1390I	CCNGG	4 cut(s)	297, 369, 735, 1131
Bme18I	GGWCC	1 cut(s)	749
BmeT110I	CYCGRG	1 cut(s)	873
BmgT120I	GGNCC	2 cut(s)	749, 1003
BmiI	GGNNCC	3 cut(s)	229, 499, 661
BmrFI	CCNGG	4 cut(s)	297, 369, 735, 1131
BmsI	GCATC	1 cut(s)	556
BpiI	GAAGAC	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	825
BpuEI	CTTGAG	2 cut(s)	154, 162
BsaI	GGTCTC	1 cut(s)	876
BsaJI	CCNNGG	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	6 cut(s)	155, 224, 266, 267, 1136, 1172
Bse1I	ACTGG	3 cut(s)	103, 122, 842
Bse3DI	GCAATG	3 cut(s)	258, 822, 1183
BseBI	CCWGG	4 cut(s)	297, 369, 735, 1131
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	780
BseLI	CCNNNNNNNGG	6 cut(s)	155, 224, 266, 267, 1136, 1172
BseMI	GCAATG	3 cut(s)	258, 822, 1183
BseMII	CTCAG	4 cut(s)	390, 522, 590, 650
BseNI	ACTGG	3 cut(s)	103, 122, 842
BseXI	GCAGC	4 cut(s)	91, 709, 790, 1093
BseYI	CCCAGC	2 cut(s)	866, 1005
BshFI	GGCC	4 cut(s)	167, 704, 1004, 1218
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	3 cut(s)	676, 733, 793
BsiHKCI	CYCGRG	1 cut(s)	873
BslI	CCNNNNNNNGG	6 cut(s)	155, 224, 266, 267, 1136, 1172
BsmAI	GTCTC	2 cut(s)	41, 876
BsmBI	CGTCTC	1 cut(s)	41
BsmI	GAATGC	3 cut(s)	995, 1102, 1198
BsnI	GGCC	4 cut(s)	167, 704, 1004, 1218
Bso31I	GGTCTC	1 cut(s)	876
BsoBI	CYCGRG	1 cut(s)	873
Bsp1286I	GDGCHC	3 cut(s)	676, 733, 793
Bsp143I	GATC	5 cut(s)	299, 428, 965, 1046, 1062
Bsp19I	CCATGG	1 cut(s)	262
BspACI	CCGC	4 cut(s)	267, 677, 957, 986
BspANI	GGCC	4 cut(s)	167, 704, 1004, 1218
BspCNI	CTCAG	4 cut(s)	391, 523, 589, 649
BspLI	GGNNCC	3 cut(s)	229, 499, 661
BspMI	ACCTGC	2 cut(s)	34, 70
BspPI	GGATC	1 cut(s)	307
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	876
BsrBI	CCGCTC	1 cut(s)	959
BsrDI	GCAATG	3 cut(s)	258, 822, 1183
BsrI	ACTGG	3 cut(s)	103, 122, 842
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	5 cut(s)	299, 428, 965, 1046, 1062
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	4 cut(s)	297, 369, 735, 1131
Bst4CI	ACNGT	3 cut(s)	106, 1149, 1214
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstC8I	GCNNGC	7 cut(s)	84, 608, 813, 980, 984, 1002, 1011
BstDEI	CTNAG	5 cut(s)	399, 531, 576, 636, 1043
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	780
BstHHI	GCGC	1 cut(s)	978
BstKTI	GATC	5 cut(s)	302, 431, 968, 1049, 1065
BstMAI	GTCTC	2 cut(s)	41, 876
BstMBI	GATC	5 cut(s)	299, 428, 965, 1046, 1062
BstNI	CCWGG	4 cut(s)	297, 369, 735, 1131
BstSCI	CCNGG	4 cut(s)	295, 367, 733, 1129
BstV1I	GCAGC	4 cut(s)	91, 709, 790, 1093
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	4 cut(s)	167, 704, 1004, 1218
BtgI	CCRYGG	1 cut(s)	262
BtgZI	GCGATG	1 cut(s)	1008
BtsCI	GGATG	1 cut(s)	780
BtsIMutI	CAGTG	1 cut(s)	102
BveI	ACCTGC	2 cut(s)	34, 70
Cac8I	GCNNGC	7 cut(s)	84, 608, 813, 980, 984, 1002, 1011
CfoI	GCGC	1 cut(s)	978
Cfr13I	GGNCC	2 cut(s)	749, 1003
Csp6I	GTAC	3 cut(s)	96, 228, 549
CviAII	CATG	8 cut(s)	155, 263, 376, 656, 685, 709, 808, 1136
CviQI	GTAC	3 cut(s)	96, 228, 549
DdeI	CTNAG	5 cut(s)	399, 531, 576, 636, 1043
DpnI	GATC	5 cut(s)	301, 430, 967, 1048, 1064
DpnII	GATC	5 cut(s)	299, 428, 965, 1046, 1062
EaeI	YGGCCR	2 cut(s)	702, 1216
EciI	GGCGGA	1 cut(s)	1001
Eco130I	CCWWGG	1 cut(s)	262
Eco31I	GGTCTC	1 cut(s)	876
Eco47I	GGWCC	1 cut(s)	749
Eco57I	CTGAAG	1 cut(s)	1035
Eco88I	CYCGRG	1 cut(s)	873
EcoRII	CCWGG	4 cut(s)	295, 367, 733, 1129
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	8 cut(s)	158, 266, 379, 659, 688, 712, 811, 1139
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FatI	CATG	8 cut(s)	154, 262, 375, 655, 684, 708, 807, 1135
FauI	CCCGC	1 cut(s)	260
FauNDI	CATATG	2 cut(s)	223, 244
Fnu4HI	GCNGC	4 cut(s)	80, 723, 804, 1082
FokI	GGATG	1 cut(s)	787
Fsp4HI	GCNGC	4 cut(s)	80, 723, 804, 1082
FspBI	CTAG	4 cut(s)	93, 540, 969, 1222
FspI	TGCGCA	1 cut(s)	977
GlaI	GCGC	1 cut(s)	977
GluI	GCNGC	4 cut(s)	80, 723, 804, 1082
GsaI	CCCAGC	2 cut(s)	870, 1009
GsuI	CTGGAG	1 cut(s)	825
HaeIII	GGCC	4 cut(s)	167, 704, 1004, 1218
HhaI	GCGC	1 cut(s)	978
Hin1II	CATG	8 cut(s)	158, 266, 379, 659, 688, 712, 811, 1139
Hin6I	GCGC	1 cut(s)	976
HinP1I	GCGC	1 cut(s)	976
HincII	GTYRAC	1 cut(s)	1057
HindII	GTYRAC	1 cut(s)	1057
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	6 cut(s)	584, 614, 691, 829, 895, 953
HpaI	GTTAAC	1 cut(s)	1057
HphI	GGTGA	3 cut(s)	176, 272, 638
Hpy166II	GTNNAC	2 cut(s)	1057, 1163
Hpy188I	TCNGA	5 cut(s)	400, 579, 639, 1051, 1093
Hpy188III	TCNNGA	5 cut(s)	113, 123, 495, 875, 1066
Hpy8I	GTNNAC	2 cut(s)	1057, 1163
Hpy99I	CGWCG	1 cut(s)	966
HpyAV	CCTTC	4 cut(s)	37, 551, 617, 807
HpyCH4III	ACNGT	3 cut(s)	106, 1149, 1214
HpyCH4V	TGCA	5 cut(s)	251, 569, 755, 815, 1196
HpyF3I	CTNAG	5 cut(s)	399, 531, 576, 636, 1043
Hsp92II	CATG	8 cut(s)	158, 266, 379, 659, 688, 712, 811, 1139
HspAI	GCGC	1 cut(s)	976
KpnI	GGTACC	1 cut(s)	231
KspAI	GTTAAC	1 cut(s)	1057
Kzo9I	GATC	5 cut(s)	299, 428, 965, 1046, 1062
LmnI	GCTCC	6 cut(s)	76, 497, 671, 736, 796, 1068
Lsp1109I	GCAGC	4 cut(s)	91, 709, 790, 1093
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	4 cut(s)	93, 540, 969, 1222
MaeIII	GTNAC	5 cut(s)	359, 581, 859, 888, 900
MalI	GATC	5 cut(s)	301, 430, 967, 1048, 1064
MbiI	CCGCTC	1 cut(s)	959
MboI	GATC	5 cut(s)	299, 428, 965, 1046, 1062
MboII	GAAGA	5 cut(s)	64, 481, 838, 945, 1040
MfeI	CAATTG	1 cut(s)	590
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	3 cut(s)	676, 733, 793
MlsI	TGGCCA	2 cut(s)	704, 1218
MluCI	AATT	4 cut(s)	413, 571, 590, 1125
MluNI	TGGCCA	2 cut(s)	704, 1218
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	1 cut(s)	857
MnlI	CCTC	9 cut(s)	159, 178, 186, 243, 303, 343, 394, 511, 1107
Mox20I	TGGCCA	2 cut(s)	704, 1218
MscI	TGGCCA	2 cut(s)	704, 1218
MseI	TTAA	5 cut(s)	108, 716, 764, 1022, 1056
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	2 cut(s)	704, 1218
MspR9I	CCNGG	4 cut(s)	297, 369, 735, 1131
MunI	CAATTG	1 cut(s)	590
Mva1269I	GAATGC	3 cut(s)	995, 1102, 1198
MvaI	CCWGG	4 cut(s)	297, 369, 735, 1131
NcoI	CCATGG	1 cut(s)	262
NdeI	CATATG	2 cut(s)	223, 244
NdeII	GATC	5 cut(s)	299, 428, 965, 1046, 1062
NlaIII	CATG	8 cut(s)	158, 266, 379, 659, 688, 712, 811, 1139
NlaIV	GGNNCC	3 cut(s)	229, 499, 661
NmuCI	GTSAC	2 cut(s)	581, 888
NsbI	TGCGCA	1 cut(s)	977
PaqCI	CACCTGC	1 cut(s)	70
PctI	GAATGC	3 cut(s)	995, 1102, 1198
PfeI	GAWTC	5 cut(s)	614, 691, 829, 895, 953
PfoI	TCCNGGA	1 cut(s)	295
PkrI	GCNGC	4 cut(s)	81, 724, 805, 1083
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
Psp6I	CCWGG	4 cut(s)	295, 367, 733, 1129
PspFI	CCCAGC	2 cut(s)	866, 1005
PspGI	CCWGG	4 cut(s)	295, 367, 733, 1129
PspN4I	GGNNCC	3 cut(s)	229, 499, 661
PspPI	GGNCC	2 cut(s)	749, 1003
PsuI	RGATCY	1 cut(s)	299
RsaI	GTAC	3 cut(s)	97, 229, 550
RsaNI	GTAC	3 cut(s)	96, 228, 549
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	5 cut(s)	108, 716, 764, 1022, 1056
SatI	GCNGC	4 cut(s)	80, 723, 804, 1082
Sau3AI	GATC	5 cut(s)	299, 428, 965, 1046, 1062
Sau96I	GGNCC	2 cut(s)	749, 1003
ScaI	AGTACT	1 cut(s)	97
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	4 cut(s)	297, 369, 735, 1131
SduI	GDGCHC	3 cut(s)	676, 733, 793
SfaNI	GCATC	1 cut(s)	556
SinI	GGWCC	1 cut(s)	749
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	2 cut(s)	169, 177
SmoI	CTYRAG	2 cut(s)	169, 177
SpeI	ACTAGT	1 cut(s)	92
Sse9I	AATT	4 cut(s)	413, 571, 590, 1125
SsiI	CCGC	4 cut(s)	267, 677, 957, 986
SspI	AATATT	1 cut(s)	769
SspMI	CTAG	4 cut(s)	93, 540, 969, 1222
StyD4I	CCNGG	4 cut(s)	295, 367, 733, 1129
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	3 cut(s)	106, 1149, 1214
TaqI	TCGA	1 cut(s)	964
TasI	AATT	4 cut(s)	413, 571, 590, 1125
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	5 cut(s)	614, 691, 829, 895, 953
Tru1I	TTAA	5 cut(s)	108, 716, 764, 1022, 1056
Tru9I	TTAA	5 cut(s)	108, 716, 764, 1022, 1056
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	2 cut(s)	581, 888
TseI	GCWGC	4 cut(s)	79, 722, 803, 1081
Tsp45I	GTSAC	2 cut(s)	581, 888
TspDTI	ATGAA	1 cut(s)	935
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	749
XapI	RAATTY	2 cut(s)	571, 1125
XspI	CTAG	4 cut(s)	93, 540, 969, 1222
ZrmI	AGTACT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.