Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008553

Physical Location & Seq

Genomic Coordinates Forward (+)

3081669 .. 3091382

Gene Structure 9714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G027000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGGTAGCAGCGAGATGGATAAACCTGCTAAAGAGAAAGAGAAGGAGTCGAAGACAACACCTGCTAGTACGCAGGAGCAGTCTGCGACCACTAGTGCTGGCACTGTTAATCCTGACTGGTCGGGATTTCAGGCGTATTCTCCTATACCTCCACATGGTTTTTTGGCATCAAGTCCTCAAGCTCACCCATATATGTGGGGTGTTCAGCATATTATGCCTCCATATGGTACCCCTCCACATCCGTATGTTGCCATGTATCCCCATAGTGGCTTATATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGCCCATTTGCTATGCCTTCTCCAAATGGTATTGTAGAAGCTTCTGGTAACACACCTGGAAGCATGGAAGCAGATGGTAAGCCCTCTGAGGTGAAGGAAAAATTACCCATAAAAAGATCAAAAGGAAGCTTGGGCAGTTTAAATATGATTACAGGGAAGAATAACGAGCCTGGGAAGACATCAGGAGCCTCTGCTAATGGAGTTCACTCTAAAAGTGCTGAGAGTGCCAGTGAAGGTACAAGTGAAGGAAGTGATGCAAATTCTCAGAGTGACTCACAACTCAAGTCAGGGGGCAGGCAAGATTCTTTGGAAGGTGATGCATCTCAGAATGGCAGCTCTGCACATGGTTCACAGAACGGAGCACCAAATACTCATAGTATGTTGAATCAAACAATGGCCATCATGCCAATAACGGCTGCTGGTGCTCCTGGTGCTGTTCCTGGTCCTGCAACCAACTTAAATATTGGGATGGACTATTGGGGTGCTCCACCTTCTTCTGGTGTGCCTGCAATGCGTGGGAAGGTTCCCACTACTCCAGTAACAGGAGGATTAGTTACTGCTGGGTCTCGGGATAGTGTTCAGTCACAGCTTTGGTTACAAGATGAGAGAGAGCTTAAAAGACAGCGAAGAAAGCAGTCAAATAGGGAATCGGCTCGTCGATCTAGGTTGCGCAAGCAGGCGGAATGTGATGAGCTGGCCCAGCGTGCTGAATTATTGAAAGAAGAGAATGCCACTCTTAGATCAGAAGTTAGCCGGATCAGGAGCGAGTATGAGCAGCTGCTCTCGGAGAATGCATCTCTGAAGGAGAAGCTTGGAGAAATTCCTGGGCACGAAGATCCAAGGTCTGCCAGAAGTGAGCAAAAATTGAGCAATGACACTAAACAGATTGCACAAACAGAAGTGCATGGAGGCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

410

Amino Acids

43.44

Weight (kDa)

6.62

Isoelectric Point (pI)

62.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32150 AT2G35530
fragaria_vesca	FvH4_5g23200 FvH4_5g23200
malus_domestica	MD06G1026900.v1.1 MD16G1279200.v1.1
prunus_persica	Prupe.5G027000_v2.0.a1
pyrus_communis	pycom06g02210 pycom16g24960
rosa_chinensis	RchiOBHm_Chr7g0212131
rosa_laevigata	RLG00000002925
rosa_multiflora	Rmu_sc0002283.1_g000045 Rmu_sc0013167.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247090
rosa_rugosa	Rorug07G0131200 Rorug07G0131200 Rorug07G0131300
rosa_samantha	Rh7AG264300 Rh7BG258200 Rh7CG280800 Rh7DG270700
rosa_wichuraiana	Rw7G022550 Rw7G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
Acc16I	TGCGCA	1 cut(s)	983
Acc36I	ACCTGC	2 cut(s)	34, 70
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	227
AciI	CCGC	1 cut(s)	992
AclWI	GGATC	3 cut(s)	307, 1076, 1142
AcoI	YGGCCR	1 cut(s)	708
AcsI	RAATTY	2 cut(s)	571, 1131
AcuI	CTGAAG	1 cut(s)	1133
AfaI	GTAC	3 cut(s)	70, 229, 550
AfiI	CCNNNNNNNGG	5 cut(s)	155, 224, 266, 809, 854
AgsI	TTSAA	2 cut(s)	697, 1030
AhlI	ACTAGT	1 cut(s)	92
AjnI	CCWGG	5 cut(s)	367, 481, 739, 751, 1135
AluBI	AGCT	9 cut(s)	182, 353, 441, 648, 901, 925, 1006, 1090, 1123
AluI	AGCT	9 cut(s)	182, 353, 441, 648, 901, 925, 1006, 1090, 1123
Alw21I	GWGCWC	3 cut(s)	676, 739, 799
Alw26I	GTCTC	1 cut(s)	882
AlwI	GGATC	3 cut(s)	307, 1076, 1142
Ama87I	CYCGRG	1 cut(s)	879
AoxI	GGCC	3 cut(s)	708, 1008, 1222
ApeKI	GCWGC	5 cut(s)	9, 645, 728, 1087, 1090
ApoI	RAATTY	2 cut(s)	571, 1131
Asp718I	GGTACC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	984
AspS9I	GGNCC	2 cut(s)	755, 1009
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	3 cut(s)	176, 415, 638
AvaI	CYCGRG	1 cut(s)	879
AvaII	GGWCC	1 cut(s)	755
BaeGI	GKGCMC	1 cut(s)	1143
BalI	TGGCCA	1 cut(s)	710
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	2 cut(s)	59, 494
Bbv12I	GWGCWC	3 cut(s)	676, 739, 799
BbvI	GCAGC	5 cut(s)	21, 657, 715, 1077, 1099
BccI	CCATC	5 cut(s)	10, 292, 380, 719, 775
BceAI	ACGGC	1 cut(s)	741
BciT130I	CCWGG	5 cut(s)	369, 483, 741, 753, 1137
BciVI	GTATCC	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	882
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	3 cut(s)	66, 93, 975
BfuAI	ACCTGC	2 cut(s)	34, 70
BfuI	GTATCC	1 cut(s)	267
BisI	GCNGC	5 cut(s)	10, 646, 729, 1088, 1091
BlsI	GCNGC	5 cut(s)	11, 647, 730, 1089, 1092
Bme1390I	CCNGG	6 cut(s)	297, 369, 483, 741, 753, 1137
Bme18I	GGWCC	1 cut(s)	755
BmeT110I	CYCGRG	1 cut(s)	879
BmgT120I	GGNCC	2 cut(s)	755, 1009
BmiI	GGNNCC	3 cut(s)	229, 499, 837
BmrFI	CCNGG	6 cut(s)	297, 369, 483, 741, 753, 1137
BmsI	GCATC	5 cut(s)	176, 556, 619, 641, 1115
BpiI	GAAGAC	2 cut(s)	59, 494
BpmI	CTGGAG	1 cut(s)	831
BpuEI	CTTGAG	2 cut(s)	162, 578
BpuMI	CCSGG	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	882
BsaJI	CCNNGG	3 cut(s)	482, 1136, 1151
BsaXI	ACNNNNNCTCC	2 cut(s)	849, 879
Bsc4I	CCNNNNNNNGG	5 cut(s)	155, 224, 266, 809, 854
Bse1I	ACTGG	4 cut(s)	122, 540, 848, 1225
Bse3DI	GCAATG	2 cut(s)	828, 1189
BseBI	CCWGG	5 cut(s)	369, 483, 741, 753, 1137
BseDI	CCNNGG	3 cut(s)	482, 1136, 1151
BseGI	GGATG	4 cut(s)	238, 280, 284, 786
BseLI	CCNNNNNNNGG	5 cut(s)	155, 224, 266, 809, 854
BseMI	GCAATG	2 cut(s)	828, 1189
BseMII	CTCAG	4 cut(s)	390, 522, 590, 650
BseNI	ACTGG	4 cut(s)	122, 540, 848, 1225
BseSI	GKGCMC	1 cut(s)	1143
BseXI	GCAGC	5 cut(s)	21, 657, 715, 1077, 1099
BseYI	CCCAGC	2 cut(s)	872, 1011
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	3 cut(s)	710, 1010, 1224
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	3 cut(s)	676, 739, 799
BsiHKCI	CYCGRG	1 cut(s)	879
BsiSI	CCGG	2 cut(s)	296, 1066
BslI	CCNNNNNNNGG	5 cut(s)	155, 224, 266, 809, 854
BsmAI	GTCTC	1 cut(s)	882
BsmI	GAATGC	2 cut(s)	1045, 1108
BsnI	GGCC	3 cut(s)	710, 1010, 1224
Bso31I	GGTCTC	1 cut(s)	882
BsoBI	CYCGRG	1 cut(s)	879
Bsp1286I	GDGCHC	4 cut(s)	676, 739, 799, 1143
Bsp143I	GATC	6 cut(s)	299, 428, 971, 1052, 1068, 1147
BspACI	CCGC	1 cut(s)	992
BspANI	GGCC	3 cut(s)	710, 1010, 1224
BspCNI	CTCAG	4 cut(s)	391, 523, 589, 649
BspLI	GGNNCC	3 cut(s)	229, 499, 837
BspMI	ACCTGC	2 cut(s)	34, 70
BspPI	GGATC	3 cut(s)	307, 1076, 1142
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	882
BsrDI	GCAATG	2 cut(s)	828, 1189
BsrI	ACTGG	4 cut(s)	122, 540, 848, 1225
BssECI	CCNNGG	3 cut(s)	482, 1136, 1151
BssMI	GATC	6 cut(s)	299, 428, 971, 1052, 1068, 1147
BssT1I	CCWWGG	1 cut(s)	1151
Bst2UI	CCWGG	5 cut(s)	369, 483, 741, 753, 1137
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	1029
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstC8I	GCNNGC	7 cut(s)	100, 608, 819, 986, 990, 1008, 1017
BstDEI	CTNAG	5 cut(s)	399, 531, 576, 636, 1049
BstF5I	GGATG	4 cut(s)	238, 280, 284, 786
BstHHI	GCGC	1 cut(s)	984
BstKTI	GATC	6 cut(s)	302, 431, 974, 1055, 1071, 1150
BstMAI	GTCTC	1 cut(s)	882
BstMBI	GATC	6 cut(s)	299, 428, 971, 1052, 1068, 1147
BstMWI	GCNNNNNNNGC	8 cut(s)	214, 536, 734, 743, 823, 943, 1012, 1016
BstNI	CCWGG	5 cut(s)	369, 483, 741, 753, 1137
BstSCI	CCNGG	6 cut(s)	295, 367, 481, 739, 751, 1135
BstSLI	GKGCMC	1 cut(s)	1143
BstV1I	GCAGC	5 cut(s)	21, 657, 715, 1077, 1099
BstV2I	GAAGAC	2 cut(s)	59, 494
BstX2I	RGATCY	2 cut(s)	299, 1147
BstXI	CCANNNNNNTGG	1 cut(s)	195
BstYI	RGATCY	2 cut(s)	299, 1147
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	710, 1010, 1224
BtsCI	GGATG	4 cut(s)	238, 280, 284, 786
BtsIMutI	CAGTG	2 cut(s)	102, 547
BveI	ACCTGC	2 cut(s)	34, 70
Cac8I	GCNNGC	7 cut(s)	100, 608, 819, 986, 990, 1008, 1017
CfoI	GCGC	1 cut(s)	984
Cfr13I	GGNCC	2 cut(s)	755, 1009
Csp6I	GTAC	3 cut(s)	69, 228, 549
CviAII	CATG	7 cut(s)	155, 253, 289, 376, 656, 715, 1217
CviQI	GTAC	3 cut(s)	69, 228, 549
DdeI	CTNAG	5 cut(s)	399, 531, 576, 636, 1049
DpnI	GATC	6 cut(s)	301, 430, 973, 1054, 1070, 1149
DpnII	GATC	6 cut(s)	299, 428, 971, 1052, 1068, 1147
DraI	TTTAAA	1 cut(s)	453
EaeI	YGGCCR	1 cut(s)	708
Eam1104I	CTCTTC	1 cut(s)	1029
EarI	CTCTTC	1 cut(s)	1029
EciI	GGCGGA	1 cut(s)	1007
Eco130I	CCWWGG	1 cut(s)	1151
Eco31I	GGTCTC	1 cut(s)	882
Eco47I	GGWCC	1 cut(s)	755
Eco57I	CTGAAG	1 cut(s)	1133
Eco88I	CYCGRG	1 cut(s)	879
EcoRII	CCWGG	5 cut(s)	367, 481, 739, 751, 1135
EcoT14I	CCWWGG	1 cut(s)	1151
EcoT22I	ATGCAT	2 cut(s)	634, 1108
ErhI	CCWWGG	1 cut(s)	1151
FaeI	CATG	7 cut(s)	158, 256, 292, 379, 659, 718, 1220
FatI	CATG	7 cut(s)	154, 252, 288, 375, 655, 714, 1216
FauNDI	CATATG	1 cut(s)	223
Fnu4HI	GCNGC	5 cut(s)	10, 646, 729, 1088, 1091
FokI	GGATG	4 cut(s)	225, 267, 271, 793
Fsp4HI	GCNGC	5 cut(s)	10, 646, 729, 1088, 1091
FspBI	CTAG	3 cut(s)	66, 93, 975
FspI	TGCGCA	1 cut(s)	983
GlaI	GCGC	1 cut(s)	983
GluI	GCNGC	5 cut(s)	10, 646, 729, 1088, 1091
GsaI	CCCAGC	2 cut(s)	876, 1015
GsuI	CTGGAG	1 cut(s)	831
HaeIII	GGCC	3 cut(s)	710, 1010, 1224
HapII	CCGG	2 cut(s)	296, 1066
HhaI	GCGC	1 cut(s)	984
Hin1II	CATG	7 cut(s)	158, 256, 292, 379, 659, 718, 1220
Hin6I	GCGC	1 cut(s)	982
HinP1I	GCGC	1 cut(s)	982
HindIII	AAGCTT	3 cut(s)	351, 439, 1121
HinfI	GANTC	5 cut(s)	47, 584, 614, 697, 959
HpaII	CCGG	2 cut(s)	296, 1066
HphI	GGTGA	3 cut(s)	176, 415, 638
Hpy166II	GTNNAC	2 cut(s)	517, 662
Hpy188I	TCNGA	6 cut(s)	400, 579, 639, 1057, 1099, 1113
Hpy188III	TCNNGA	5 cut(s)	113, 123, 495, 881, 1072
Hpy8I	GTNNAC	2 cut(s)	517, 662
Hpy99I	CGWCG	1 cut(s)	972
HpyAV	CCTTC	9 cut(s)	37, 339, 400, 539, 551, 617, 813, 826, 1108
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	8 cut(s)	569, 632, 653, 761, 821, 1106, 1202, 1216
HpyF10VI	GCNNNNNNNGC	8 cut(s)	214, 536, 734, 743, 823, 943, 1012, 1016
HpyF3I	CTNAG	5 cut(s)	399, 531, 576, 636, 1049
Hsp92II	CATG	7 cut(s)	158, 256, 292, 379, 659, 718, 1220
HspAI	GCGC	1 cut(s)	982
KpnI	GGTACC	1 cut(s)	231
Kzo9I	GATC	6 cut(s)	299, 428, 971, 1052, 1068, 1147
LmnI	GCTCC	6 cut(s)	76, 497, 671, 742, 802, 1074
Lsp1109I	GCAGC	5 cut(s)	21, 657, 715, 1077, 1099
LweI	GCATC	5 cut(s)	176, 556, 619, 641, 1115
MaeI	CTAG	3 cut(s)	66, 93, 975
MaeIII	GTNAC	6 cut(s)	359, 581, 850, 865, 894, 906
MalI	GATC	6 cut(s)	301, 430, 973, 1054, 1070, 1149
MboI	GATC	6 cut(s)	299, 428, 971, 1052, 1068, 1147
MboII	GAAGA	7 cut(s)	64, 481, 499, 798, 951, 1046, 1157
MflI	RGATCY	2 cut(s)	299, 1147
MhlI	GDGCHC	4 cut(s)	676, 739, 799, 1143
MlsI	TGGCCA	1 cut(s)	710
MluCI	AATT	5 cut(s)	413, 571, 1022, 1131, 1175
MluNI	TGGCCA	1 cut(s)	710
MlyI	GAGTC	2 cut(s)	56, 578
Mox20I	TGGCCA	1 cut(s)	710
Mph1103I	ATGCAT	2 cut(s)	634, 1108
MscI	TGGCCA	1 cut(s)	710
MseI	TTAA	4 cut(s)	108, 452, 770, 927
MslI	CAYNNNNRTG	2 cut(s)	193, 243
Msp20I	TGGCCA	1 cut(s)	710
MspA1I	CMGCKG	1 cut(s)	1090
MspI	CCGG	2 cut(s)	296, 1066
MspR9I	CCNGG	6 cut(s)	297, 369, 483, 741, 753, 1137
Mva1269I	GAATGC	2 cut(s)	1045, 1108
MvaI	CCWGG	5 cut(s)	369, 483, 741, 753, 1137
MwoI	GCNNNNNNNGC	8 cut(s)	214, 536, 734, 743, 823, 943, 1012, 1016
NciI	CCSGG	1 cut(s)	297
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	6 cut(s)	299, 428, 971, 1052, 1068, 1147
NlaIII	CATG	7 cut(s)	158, 256, 292, 379, 659, 718, 1220
NlaIV	GGNNCC	3 cut(s)	229, 499, 837
NmuCI	GTSAC	2 cut(s)	581, 894
NsbI	TGCGCA	1 cut(s)	983
NsiI	ATGCAT	2 cut(s)	634, 1108
PaqCI	CACCTGC	1 cut(s)	70
PctI	GAATGC	2 cut(s)	1045, 1108
PfeI	GAWTC	3 cut(s)	614, 697, 959
PfoI	TCCNGGA	1 cut(s)	295
PkrI	GCNGC	5 cut(s)	11, 647, 730, 1089, 1092
PleI	GAGTC	2 cut(s)	55, 578
PpsI	GAGTC	2 cut(s)	55, 578
Psp6I	CCWGG	5 cut(s)	367, 481, 739, 751, 1135
PspFI	CCCAGC	2 cut(s)	872, 1011
PspGI	CCWGG	5 cut(s)	367, 481, 739, 751, 1135
PspN4I	GGNNCC	3 cut(s)	229, 499, 837
PspPI	GGNCC	2 cut(s)	755, 1009
PsuI	RGATCY	2 cut(s)	299, 1147
PvuII	CAGCTG	1 cut(s)	1090
RsaI	GTAC	3 cut(s)	70, 229, 550
RsaNI	GTAC	3 cut(s)	69, 228, 549
RseI	CAYNNNNRTG	2 cut(s)	193, 243
SaqAI	TTAA	4 cut(s)	108, 452, 770, 927
SatI	GCNGC	5 cut(s)	10, 646, 729, 1088, 1091
Sau3AI	GATC	6 cut(s)	299, 428, 971, 1052, 1068, 1147
Sau96I	GGNCC	2 cut(s)	755, 1009
SchI	GAGTC	2 cut(s)	56, 578
ScrFI	CCNGG	6 cut(s)	297, 369, 483, 741, 753, 1137
SduI	GDGCHC	4 cut(s)	676, 739, 799, 1143
SfaNI	GCATC	5 cut(s)	176, 556, 619, 641, 1115
SinI	GGWCC	1 cut(s)	755
SmiMI	CAYNNNNRTG	2 cut(s)	193, 243
SmlI	CTYRAG	2 cut(s)	177, 593
SmoI	CTYRAG	2 cut(s)	177, 593
SpeI	ACTAGT	1 cut(s)	92
Sse9I	AATT	5 cut(s)	413, 571, 1022, 1131, 1175
SsiI	CCGC	1 cut(s)	992
SspI	AATATT	1 cut(s)	775
SspMI	CTAG	3 cut(s)	66, 93, 975
StyD4I	CCNGG	6 cut(s)	295, 367, 481, 739, 751, 1135
StyI	CCWWGG	1 cut(s)	1151
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	50, 970
TasI	AATT	5 cut(s)	413, 571, 1022, 1131, 1175
TfiI	GAWTC	3 cut(s)	614, 697, 959
Tru1I	TTAA	4 cut(s)	108, 452, 770, 927
Tru9I	TTAA	4 cut(s)	108, 452, 770, 927
TscAI	CASTG	2 cut(s)	109, 547
TseFI	GTSAC	2 cut(s)	581, 894
TseI	GCWGC	5 cut(s)	9, 645, 728, 1087, 1090
Tsp45I	GTSAC	2 cut(s)	581, 894
TspGWI	ACGGA	2 cut(s)	231, 684
TspRI	CASTG	2 cut(s)	109, 547
VpaK11BI	GGWCC	1 cut(s)	755
XapI	RAATTY	2 cut(s)	571, 1131
XspI	CTAG	3 cut(s)	66, 93, 975
Zsp2I	ATGCAT	2 cut(s)	634, 1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.