MD16G1279200.v1.1
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
37922790 .. 37931541
8752 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1279200.v1.1.491

Sequence Viewer

Length: 1230 bp
ATGGGTAGCAGTGAGATGGACAAACCCTCTAAAGAGAAAGAGAAGGAGGCAAAGACAACACCTGCTAGTACGCAGGAGCAGTCTGCGACTACCAGTGCTGGCACTGTTAATCCTGAGTGGTCGGGATTTCAGGCATATTCTCCAATACCTCCACATGGATTTATGGCCTCAAGTCCTCAAGCTCACCCGTATATGTGGGGGGTTCAGCATATTATGCCACCCTATGGTACCCCTCCCCACCCATATGTTGCAATGTATCCCCATGGCGGCTTATATGCTCACCCGTCTATGCCTCCTGGATCTTATCCTTTTAGCCCGTTTGCTATGCCTACTCCAAATGGTATTGTAGAGGTTTCTGGTAACATACCTGGAAGCATGGAAGCAGATGGTAAGCCATCTGAGGTCAAGGACAAATTACCAATAAAACGATCAAAAGGAAGCTTGGGCAGTTTGAATATGATTACAGGGAAGAATAACGAGCTTGGCAAAACATCAGGAGCCTCTGCTAATGGAATTTATTCCAAAAGTGCTGAGAGTGCTAGTGATGGTACAAGTGAAGGAAGTGATGCAAATTCTCAGAGTGACTCACAATTGAAGTCTGGGGTCAGGCAAGATTCTTTGGAAGGTAATGCATCTCAGAATGGCAGTTCTGCACATGGTTCTCAAAATGGAGCACCAAACACACATACCGTGTTGAATCAGACGATGGCCGTCATGCCAATAACGGCTGCTGGTGCTCCTGGCGTTGTTCCTGGTCCTGCAACTAACTTAAATATTGGGATGGACTATTGGGGAGCTCCACCTTCTGCCGCCATGCCTGCAATGCGTGGGAAGGTTCCAACTACTCCAGTATCAGCAGGAATAGTTACTGCTGGGTCTCGGGATAGTGTTCAGTCACAGCTTTGGTTACAAGATGAGAGAGAGCTTAAAAGACAGAAAAGAAAGCAGTCAAATAGGGAATCCGCTCGTCGATCTAGGTTGCGCAAGCAGGCGGAATGCGATGAGCTGGCCCAGCGTGCTGAAGCCTTAAAAGAGGAAAATGGCACTCTTAGATCAGAAGTTAACCGGATCAGGAGCAAGTATGAGCTGCTTCTCTCAGAGAATACCTCTCTAAAGGAGAGGCTTGGAGAAATTCCTGGTCACGAAGATGTACGGTCTGCCAGAAGTGAACCACATTTGAGCAATGACACTAAACAGATTGCACAAACAGAACGGCATGGCGGCCTCTAG

Protein Analysis

410

Amino Acids

43.6

Weight (kDa)

7.84

Isoelectric Point (pI)

58.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFMR PF07777 1 - 98 1.1e-29 G-box binding protein MFMR
MFMR_assoc PF16596 137 - 273 5.2e-57 Disordered region downstream of MFMR
bZIP_1 PF00170 306 - 368 8.6e-20 bZIP transcription factor
bZIP_2 PF07716 308 - 356 2.2e-07 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
Acc16I TGCGCA 1 cut(s) 983
Acc36I ACCTGC 1 cut(s) 70
Acc65I GGTACC 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 227
AccB7I CCANNNNNTGG 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 965
AciI CCGC 5 cut(s) 267, 810, 963, 992, 1221
AclWI GGATC 2 cut(s) 307, 1076
AcoI YGGCCR 1 cut(s) 708
AcsI RAATTY 3 cut(s) 513, 571, 1131
AcuI CTGAAG 1 cut(s) 1041
AfaI GTAC 4 cut(s) 70, 229, 550, 1152
AfiI CCNNNNNNNGG 3 cut(s) 155, 224, 266
AgsI TTSAA 3 cut(s) 454, 595, 697
AjnI CCWGG 5 cut(s) 295, 367, 739, 751, 1135
AluBI AGCT 8 cut(s) 182, 441, 481, 797, 901, 925, 1006, 1087
AluI AGCT 8 cut(s) 182, 441, 481, 797, 901, 925, 1006, 1087
Alw21I GWGCWC 3 cut(s) 676, 739, 799
Alw26I GTCTC 1 cut(s) 882
AlwI GGATC 2 cut(s) 307, 1076
Ama87I CYCGRG 1 cut(s) 879
AoxI GGCC 4 cut(s) 165, 708, 1008, 1222
ApeKI GCWGC 2 cut(s) 728, 1087
ApoI RAATTY 3 cut(s) 513, 571, 1131
Asp700I GAANNNNTTC 1 cut(s) 517
Asp718I GGTACC 1 cut(s) 227
AspLEI GCGC 1 cut(s) 984
AspS9I GGNCC 2 cut(s) 755, 1009
AsuHPI GGTGA 2 cut(s) 176, 272
AvaI CYCGRG 1 cut(s) 879
AvaII GGWCC 1 cut(s) 755
BaeI ACNNNNGTAYC 2 cut(s) 834, 867
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 799
Bbv12I GWGCWC 3 cut(s) 676, 739, 799
BbvI GCAGC 2 cut(s) 715, 1074
BccI CCATC 6 cut(s) 10, 380, 403, 539, 700, 775
BceAI ACGGC 2 cut(s) 695, 741
BciT130I CCWGG 5 cut(s) 297, 369, 741, 753, 1137
BciVI GTATCC 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 882
BfaI CTAG 4 cut(s) 66, 540, 975, 1228
BfuAI ACCTGC 1 cut(s) 70
BfuI GTATCC 1 cut(s) 267
BisI GCNGC 5 cut(s) 268, 729, 810, 1088, 1222
BlsI GCNGC 5 cut(s) 269, 730, 811, 1089, 1223
Bme1390I CCNGG 5 cut(s) 297, 369, 741, 753, 1137
Bme18I GGWCC 1 cut(s) 755
BmeT110I CYCGRG 1 cut(s) 879
BmgT120I GGNCC 2 cut(s) 755, 1009
BmiI GGNNCC 3 cut(s) 229, 499, 837
BmrFI CCNGG 5 cut(s) 297, 369, 741, 753, 1137
BmsI GCATC 2 cut(s) 556, 641
BplI GAGNNNNNCTC 2 cut(s) 1091, 1123
BpmI CTGGAG 1 cut(s) 831
BpuEI CTTGAG 2 cut(s) 154, 162
BsaI GGTCTC 1 cut(s) 882
BsaJI CCNNGG 1 cut(s) 262
BsaWI WCCGGW 1 cut(s) 1065
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 224, 266
Bse1I ACTGG 2 cut(s) 93, 848
Bse3DI GCAATG 3 cut(s) 258, 828, 1189
BseBI CCWGG 5 cut(s) 297, 369, 741, 753, 1137
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 786
BseLI CCNNNNNNNGG 3 cut(s) 155, 224, 266
BseMI GCAATG 3 cut(s) 258, 828, 1189
BseMII CTCAG 6 cut(s) 105, 390, 522, 590, 650, 1110
BseNI ACTGG 2 cut(s) 93, 848
BseXI GCAGC 2 cut(s) 715, 1074
BseYI CCCAGC 2 cut(s) 872, 1011
BsgI GTGCAG 1 cut(s) 636
BshFI GGCC 4 cut(s) 167, 710, 1010, 1224
BshNI GGYRCC 1 cut(s) 227
BsiHKAI GWGCWC 3 cut(s) 676, 739, 799
BsiHKCI CYCGRG 1 cut(s) 879
BsiSI CCGG 1 cut(s) 1066
BslI CCNNNNNNNGG 3 cut(s) 155, 224, 266
BsmAI GTCTC 1 cut(s) 882
BsmI GAATGC 1 cut(s) 1001
BsnI GGCC 4 cut(s) 167, 710, 1010, 1224
Bso31I GGTCTC 1 cut(s) 882
BsoBI CYCGRG 1 cut(s) 879
Bsp1286I GDGCHC 3 cut(s) 676, 739, 799
Bsp143I GATC 5 cut(s) 299, 428, 971, 1052, 1068
Bsp19I CCATGG 1 cut(s) 262
BspACI CCGC 5 cut(s) 267, 810, 963, 992, 1221
BspANI GGCC 4 cut(s) 167, 710, 1010, 1224
BspCNI CTCAG 6 cut(s) 106, 391, 523, 589, 649, 1109
BspLI GGNNCC 3 cut(s) 229, 499, 837
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 2 cut(s) 307, 1076
BspT107I GGYRCC 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 882
BsrBI CCGCTC 1 cut(s) 965
BsrDI GCAATG 3 cut(s) 258, 828, 1189
BsrI ACTGG 2 cut(s) 93, 848
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 5 cut(s) 299, 428, 971, 1052, 1068
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 5 cut(s) 297, 369, 741, 753, 1137
Bst4CI ACNGT 3 cut(s) 106, 691, 1155
BstAPI GCANNNNNTGC 1 cut(s) 214
BstC8I GCNNGC 6 cut(s) 100, 819, 986, 990, 1008, 1017
BstDEI CTNAG 7 cut(s) 114, 399, 531, 576, 636, 1049, 1096
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 786
BstHHI GCGC 1 cut(s) 984
BstKTI GATC 5 cut(s) 302, 431, 974, 1055, 1071
BstMAI GTCTC 1 cut(s) 882
BstMBI GATC 5 cut(s) 299, 428, 971, 1052, 1068
BstMWI GCNNNNNNNGC 7 cut(s) 214, 536, 734, 818, 823, 1012, 1016
BstNI CCWGG 5 cut(s) 297, 369, 741, 753, 1137
BstSCI CCNGG 5 cut(s) 295, 367, 739, 751, 1135
BstV1I GCAGC 2 cut(s) 715, 1074
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
BsuI GTATCC 1 cut(s) 267
BsuRI GGCC 4 cut(s) 167, 710, 1010, 1224
BtgI CCRYGG 1 cut(s) 262
BtgZI GCGATG 1 cut(s) 1014
BtsCI GGATG 1 cut(s) 786
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 3 cut(s) 16, 100, 102
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 6 cut(s) 100, 819, 986, 990, 1008, 1017
CfoI GCGC 1 cut(s) 984
Cfr13I GGNCC 2 cut(s) 755, 1009
Csp6I GTAC 4 cut(s) 69, 228, 549, 1151
CviAII CATG 7 cut(s) 155, 263, 376, 656, 715, 814, 1217
CviQI GTAC 4 cut(s) 69, 228, 549, 1151
DdeI CTNAG 7 cut(s) 114, 399, 531, 576, 636, 1049, 1096
DpnI GATC 5 cut(s) 301, 430, 973, 1054, 1070
DpnII GATC 5 cut(s) 299, 428, 971, 1052, 1068
EaeI YGGCCR 1 cut(s) 708
EciI GGCGGA 1 cut(s) 1007
Ecl136II GAGCTC 1 cut(s) 797
Eco130I CCWWGG 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 799
Eco31I GGTCTC 1 cut(s) 882
Eco47I GGWCC 1 cut(s) 755
Eco53kI GAGCTC 1 cut(s) 797
Eco57I CTGAAG 1 cut(s) 1041
Eco88I CYCGRG 1 cut(s) 879
EcoICRI GAGCTC 1 cut(s) 797
EcoRII CCWGG 5 cut(s) 295, 367, 739, 751, 1135
EcoT14I CCWWGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 634
EcoT38I GRGCYC 1 cut(s) 799
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 7 cut(s) 158, 266, 379, 659, 718, 817, 1220
FatI CATG 7 cut(s) 154, 262, 375, 655, 714, 813, 1216
FauNDI CATATG 1 cut(s) 244
Fnu4HI GCNGC 5 cut(s) 268, 729, 810, 1088, 1222
FokI GGATG 1 cut(s) 793
FriOI GRGCYC 1 cut(s) 799
Fsp4HI GCNGC 5 cut(s) 268, 729, 810, 1088, 1222
FspBI CTAG 4 cut(s) 66, 540, 975, 1228
FspI TGCGCA 1 cut(s) 983
GlaI GCGC 1 cut(s) 983
GluI GCNGC 5 cut(s) 268, 729, 810, 1088, 1222
GsaI CCCAGC 2 cut(s) 876, 1015
GsuI CTGGAG 1 cut(s) 831
HaeIII GGCC 4 cut(s) 167, 710, 1010, 1224
HapII CCGG 1 cut(s) 1066
HhaI GCGC 1 cut(s) 984
Hin1II CATG 7 cut(s) 158, 266, 379, 659, 718, 817, 1220
Hin6I GCGC 1 cut(s) 982
HinP1I GCGC 1 cut(s) 982
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HindIII AAGCTT 1 cut(s) 439
HinfI GANTC 4 cut(s) 584, 614, 697, 959
HpaI GTTAAC 1 cut(s) 1063
HpaII CCGG 1 cut(s) 1066
HphI GGTGA 2 cut(s) 176, 272
Hpy166II GTNNAC 2 cut(s) 1063, 1169
Hpy188I TCNGA 6 cut(s) 400, 579, 639, 702, 1057, 1099
Hpy188III TCNNGA 6 cut(s) 113, 123, 495, 881, 1072, 1142
Hpy8I GTNNAC 2 cut(s) 1063, 1169
Hpy99I CGWCG 1 cut(s) 972
HpyAV CCTTC 5 cut(s) 37, 551, 617, 813, 826
HpyCH4III ACNGT 3 cut(s) 106, 691, 1155
HpyCH4V TGCA 7 cut(s) 251, 569, 632, 653, 761, 821, 1202
HpyF10VI GCNNNNNNNGC 7 cut(s) 214, 536, 734, 818, 823, 1012, 1016
HpyF3I CTNAG 7 cut(s) 114, 399, 531, 576, 636, 1049, 1096
Hsp92II CATG 7 cut(s) 158, 266, 379, 659, 718, 817, 1220
HspAI GCGC 1 cut(s) 982
KpnI GGTACC 1 cut(s) 231
KspAI GTTAAC 1 cut(s) 1063
Kzo9I GATC 5 cut(s) 299, 428, 971, 1052, 1068
LmnI GCTCC 7 cut(s) 76, 497, 671, 742, 794, 802, 1074
Lsp1109I GCAGC 2 cut(s) 715, 1074
LweI GCATC 2 cut(s) 556, 641
MaeI CTAG 4 cut(s) 66, 540, 975, 1228
MaeIII GTNAC 6 cut(s) 359, 581, 865, 894, 906, 1139
MalI GATC 5 cut(s) 301, 430, 973, 1054, 1070
MbiI CCGCTC 1 cut(s) 965
MboI GATC 5 cut(s) 299, 428, 971, 1052, 1068
MboII GAAGA 2 cut(s) 481, 1157
MfeI CAATTG 1 cut(s) 590
MflI RGATCY 1 cut(s) 299
MhlI GDGCHC 3 cut(s) 676, 739, 799
MluCI AATT 5 cut(s) 413, 513, 571, 590, 1131
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 1 cut(s) 863
Mph1103I ATGCAT 1 cut(s) 634
MroXI GAANNNNTTC 1 cut(s) 517
MseI TTAA 5 cut(s) 108, 770, 927, 1028, 1062
MslI CAYNNNNRTG 2 cut(s) 243, 1146
MspI CCGG 1 cut(s) 1066
MspR9I CCNGG 5 cut(s) 297, 369, 741, 753, 1137
MunI CAATTG 1 cut(s) 590
Mva1269I GAATGC 1 cut(s) 1001
MvaI CCWGG 5 cut(s) 297, 369, 741, 753, 1137
MwoI GCNNNNNNNGC 7 cut(s) 214, 536, 734, 818, 823, 1012, 1016
NcoI CCATGG 1 cut(s) 262
NdeI CATATG 1 cut(s) 244
NdeII GATC 5 cut(s) 299, 428, 971, 1052, 1068
NlaIII CATG 7 cut(s) 158, 266, 379, 659, 718, 817, 1220
NlaIV GGNNCC 3 cut(s) 229, 499, 837
NmuCI GTSAC 3 cut(s) 581, 894, 1139
NsbI TGCGCA 1 cut(s) 983
NsiI ATGCAT 1 cut(s) 634
PaqCI CACCTGC 1 cut(s) 70
PctI GAATGC 1 cut(s) 1001
PdmI GAANNNNTTC 1 cut(s) 517
PfeI GAWTC 3 cut(s) 614, 697, 959
PflMI CCANNNNNTGG 1 cut(s) 224
PfoI TCCNGGA 1 cut(s) 295
PkrI GCNGC 5 cut(s) 269, 730, 811, 1089, 1223
PleI GAGTC 1 cut(s) 578
PpsI GAGTC 1 cut(s) 578
Psp124BI GAGCTC 1 cut(s) 799
Psp6I CCWGG 5 cut(s) 295, 367, 739, 751, 1135
PspFI CCCAGC 2 cut(s) 872, 1011
PspGI CCWGG 5 cut(s) 295, 367, 739, 751, 1135
PspN4I GGNNCC 3 cut(s) 229, 499, 837
PspPI GGNCC 2 cut(s) 755, 1009
PsuI RGATCY 1 cut(s) 299
RsaI GTAC 4 cut(s) 70, 229, 550, 1152
RsaNI GTAC 4 cut(s) 69, 228, 549, 1151
RseI CAYNNNNRTG 2 cut(s) 243, 1146
SacI GAGCTC 1 cut(s) 799
SaqAI TTAA 5 cut(s) 108, 770, 927, 1028, 1062
SatI GCNGC 5 cut(s) 268, 729, 810, 1088, 1222
Sau3AI GATC 5 cut(s) 299, 428, 971, 1052, 1068
Sau96I GGNCC 2 cut(s) 755, 1009
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 5 cut(s) 297, 369, 741, 753, 1137
SduI GDGCHC 3 cut(s) 676, 739, 799
SfaNI GCATC 2 cut(s) 556, 641
SinI GGWCC 1 cut(s) 755
SmiMI CAYNNNNRTG 2 cut(s) 243, 1146
SmlI CTYRAG 2 cut(s) 169, 177
SmoI CTYRAG 2 cut(s) 169, 177
Sse9I AATT 5 cut(s) 413, 513, 571, 590, 1131
SsiI CCGC 5 cut(s) 267, 810, 963, 992, 1221
SspI AATATT 1 cut(s) 775
SspMI CTAG 4 cut(s) 66, 540, 975, 1228
SstI GAGCTC 1 cut(s) 799
StyD4I CCNGG 5 cut(s) 295, 367, 739, 751, 1135
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 3 cut(s) 106, 691, 1155
TaqI TCGA 1 cut(s) 970
TasI AATT 5 cut(s) 413, 513, 571, 590, 1131
TauI GCSGC 3 cut(s) 270, 812, 1224
TfiI GAWTC 3 cut(s) 614, 697, 959
Tru1I TTAA 5 cut(s) 108, 770, 927, 1028, 1062
Tru9I TTAA 5 cut(s) 108, 770, 927, 1028, 1062
TscAI CASTG 3 cut(s) 16, 100, 109
TseFI GTSAC 3 cut(s) 581, 894, 1139
TseI GCWGC 2 cut(s) 728, 1087
Tsp45I GTSAC 3 cut(s) 581, 894, 1139
TspRI CASTG 3 cut(s) 16, 100, 109
Van91I CCANNNNNTGG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 755
XapI RAATTY 3 cut(s) 513, 571, 1131
XmnI GAANNNNTTC 1 cut(s) 517
XspI CTAG 4 cut(s) 66, 540, 975, 1228
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.