Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008553

Physical Location & Seq

Genomic Coordinates Reverse (-)

27168745 .. 27176013

Gene Structure 7269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG264300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCCTCCACATGGGTTTATGGCATCAAGTCCCCAAGCTCACCCTCACCCATATATGTGGGGCGTTCAGCATATTATGCCTCCATATGGTACTCCTCCACACCCATATGTTGCAATGTATCCCCATGGTGGCTTATATGCTCATCCATCTATGCCTCCGGGATCTTACCCTTTCAGCCCTTTTGCTATGCCCTCGCCAAATGGGATCGTAGAGGCTTCTGGTAACACACCTGGCAGCATAGAAGCAGATGGTAAGCCATCTGAGGCAAAGGAAAAGTTACCGATCAAAAGATCAAAAGGAAGCCTGGGCAGCTTAAACATGATTACCGGAAAGAATAATGAGCTTCCTAAAACATCAGGAGCCTCGGCTAATGGAGTTTATTCTAAGAGTGCTGAGAGTGGTAGTGAAGGCACAAGTGAAGGAAGCGATGCAAATTCTCAGAGTGACTCACAACTGAAGTCAGGAGGAAGGGGAGATTCTTTGGAAGGTGATGCATCTCAGAATGGTGGTTCTGCACATAATTCTCAAAATGGAACACCAAATTCTCACGCAGTGTTGAACCCCACAATGGCAATTGTGCCAATGACAGCTGGTGGTGCTCCCATTGCCGTTTCTGGTCCTGCAACAAACCTAAATATTGGGATGGACTATTGGGGTGCCCCATCTTCTGCCATGCCTGCAATCCGTGGGAAGGTTCCCGCTACTCCAGTTGCTGGAGGACTAGTTACTCCAGGATCTCGGGATGGTGCTCAATCACAGCTTTGGTTACAAGATGAAAGAGAGCTTAAAAGACAGCGGAGAAAGCAGTCAAATAGGGAATCTGCTCGTCGTTCTAGGTTGCGCAAGCAGGCTGAATGTGATGAGCTGGCCCAGCGTGCTGAAGTCTTAAAAGATGAAAATGCCACACTCAGATCAGAAGTTAACCGCATCAGGAGTGAGTATGAGCAGCTTCTTTCAGAGAATGCCTCCCTGAAGGAGAGGCTCGGGGAAATTCCTGGGCATGAAGATCTGAGGTCTGGTAGAAGTGACCAACATTTGAGCAATGACACTAATCAGATTGCACAAACAGAACTGCATGGTGGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

362

Amino Acids

38.39

Weight (kDa)

6.68

Isoelectric Point (pI)

62.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR	PF07777	2 - 52	1.3e-15	G-box binding protein MFMR
MFMR_assoc	PF16596	91 - 224	9.1e-53	Disordered region downstream of MFMR
bZIP_1	PF00170	259 - 321	8.4e-21	bZIP transcription factor
bZIP_2	PF07716	261 - 311	2.3e-07	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32150 AT2G35530
fragaria_vesca	FvH4_5g23200 FvH4_5g23200
malus_domestica	MD06G1026900.v1.1 MD16G1279200.v1.1
prunus_persica	Prupe.5G027000_v2.0.a1
pyrus_communis	pycom06g02210 pycom16g24960
rosa_chinensis	RchiOBHm_Chr7g0212131
rosa_laevigata	RLG00000002925
rosa_multiflora	Rmu_sc0002283.1_g000045 Rmu_sc0013167.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247090
rosa_rugosa	Rorug07G0131200 Rorug07G0131200 Rorug07G0131300
rosa_samantha	Rh7AG264300 Rh7BG258200 Rh7CG280800 Rh7DG270700
rosa_wichuraiana	Rw7G022550 Rw7G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	842
AccB1I	GGYRCC	1 cut(s)	656
AccB7I	CCANNNNNTGG	1 cut(s)	713
AciI	CCGC	3 cut(s)	699, 796, 925
AclWI	GGATC	3 cut(s)	169, 212, 742
AcsI	RAATTY	3 cut(s)	433, 541, 990
AcuI	CTGAAG	3 cut(s)	476, 900, 992
AdeI	CACNNNGTG	1 cut(s)	553
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	6 cut(s)	11, 86, 128, 568, 691, 713
AgsI	TTSAA	1 cut(s)	559
AhlI	ACTAGT	1 cut(s)	721
AjnI	CCWGG	4 cut(s)	229, 303, 730, 994
AluBI	AGCT	8 cut(s)	38, 312, 343, 590, 760, 784, 865, 949
AluI	AGCT	8 cut(s)	38, 312, 343, 590, 760, 784, 865, 949
Alw21I	GWGCWC	2 cut(s)	601, 751
AlwI	GGATC	3 cut(s)	169, 212, 742
AlwNI	CAGNNNCTG	1 cut(s)	713
Ama87I	CYCGRG	2 cut(s)	738, 983
AoxI	GGCC	1 cut(s)	867
ApeKI	GCWGC	3 cut(s)	234, 309, 946
ApoI	RAATTY	3 cut(s)	433, 541, 990
AspLEI	GCGC	1 cut(s)	843
AspS9I	GGNCC	2 cut(s)	617, 868
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	3 cut(s)	32, 38, 500
AvaI	CYCGRG	2 cut(s)	738, 983
AvaII	GGWCC	1 cut(s)	617
BaeGI	GKGCMC	1 cut(s)	661
BanI	GGYRCC	1 cut(s)	656
Bbv12I	GWGCWC	2 cut(s)	601, 751
BbvI	GCAGC	3 cut(s)	246, 321, 958
BccI	CCATC	6 cut(s)	154, 242, 265, 637, 670, 737
BceAI	ACGGC	1 cut(s)	593
BciT130I	CCWGG	4 cut(s)	231, 305, 732, 996
BciVI	GTATCC	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	159
BcuI	ACTAGT	1 cut(s)	721
BfaI	CTAG	3 cut(s)	722, 834, 1087
BfuI	GTATCC	1 cut(s)	129
BglII	AGATCT	1 cut(s)	1006
BisI	GCNGC	3 cut(s)	235, 310, 947
BlsI	GCNGC	3 cut(s)	236, 311, 948
Bme1390I	CCNGG	5 cut(s)	159, 231, 305, 732, 996
Bme18I	GGWCC	1 cut(s)	617
BmeT110I	CYCGRG	2 cut(s)	738, 983
BmgT120I	GGNCC	2 cut(s)	617, 868
BmiI	GGNNCC	3 cut(s)	361, 658, 696
BmrFI	CCNGG	5 cut(s)	159, 231, 305, 732, 996
BmsI	GCATC	5 cut(s)	32, 418, 481, 503, 936
BplI	GAGNNNNNCTC	2 cut(s)	950, 982
BpmI	CTGGAG	3 cut(s)	690, 714, 735
BpuMI	CCSGG	1 cut(s)	159
BsaJI	CCNNGG	5 cut(s)	124, 304, 363, 685, 995
BsaWI	WCCGGW	1 cut(s)	326
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bsc4I	CCNNNNNNNGG	6 cut(s)	11, 86, 128, 568, 691, 713
Bse1I	ACTGG	1 cut(s)	707
Bse3DI	GCAATG	3 cut(s)	120, 603, 1048
BseBI	CCWGG	4 cut(s)	231, 305, 732, 996
BseDI	CCNNGG	5 cut(s)	124, 304, 363, 685, 995
BseGI	GGATG	3 cut(s)	142, 648, 748
BseLI	CCNNNNNNNGG	6 cut(s)	11, 86, 128, 568, 691, 713
BseMI	GCAATG	3 cut(s)	120, 603, 1048
BseMII	CTCAG	6 cut(s)	252, 384, 452, 512, 922, 1001
BseNI	ACTGG	1 cut(s)	707
BseRI	GAGGAG	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	3 cut(s)	246, 321, 958
BseYI	CCCAGC	1 cut(s)	870
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	1 cut(s)	869
BshNI	GGYRCC	1 cut(s)	656
BsiHKAI	GWGCWC	2 cut(s)	601, 751
BsiHKCI	CYCGRG	2 cut(s)	738, 983
BsiSI	CCGG	2 cut(s)	158, 327
BslFI	GGGAC	1 cut(s)	15
BslI	CCNNNNNNNGG	6 cut(s)	11, 86, 128, 568, 691, 713
BsmFI	GGGAC	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	967
BsnI	GGCC	1 cut(s)	869
BsoBI	CYCGRG	2 cut(s)	738, 983
Bsp1286I	GDGCHC	3 cut(s)	601, 661, 751
Bsp143I	GATC	7 cut(s)	161, 204, 282, 290, 734, 911, 1006
Bsp19I	CCATGG	1 cut(s)	124
BspACI	CCGC	3 cut(s)	699, 796, 925
BspANI	GGCC	1 cut(s)	869
BspCNI	CTCAG	6 cut(s)	253, 385, 451, 511, 921, 1002
BspLI	GGNNCC	3 cut(s)	361, 658, 696
BspPI	GGATC	3 cut(s)	169, 212, 742
BspT107I	GGYRCC	1 cut(s)	656
BsrDI	GCAATG	3 cut(s)	120, 603, 1048
BsrI	ACTGG	1 cut(s)	707
BssECI	CCNNGG	5 cut(s)	124, 304, 363, 685, 995
BssMI	GATC	7 cut(s)	161, 204, 282, 290, 734, 911, 1006
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	4 cut(s)	231, 305, 732, 996
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstC8I	GCNNGC	5 cut(s)	678, 845, 849, 867, 876
BstDEI	CTNAG	7 cut(s)	261, 384, 393, 438, 498, 908, 1010
BstDSI	CCRYGG	2 cut(s)	124, 685
BstF5I	GGATG	3 cut(s)	142, 648, 748
BstHHI	GCGC	1 cut(s)	843
BstKTI	GATC	7 cut(s)	164, 207, 285, 293, 737, 914, 1009
BstMBI	GATC	7 cut(s)	161, 204, 282, 290, 734, 911, 1006
BstMWI	GCNNNNNNNGC	8 cut(s)	76, 309, 596, 605, 677, 802, 871, 875
BstNI	CCWGG	4 cut(s)	231, 305, 732, 996
BstSCI	CCNGG	5 cut(s)	157, 229, 303, 730, 994
BstSLI	GKGCMC	1 cut(s)	661
BstV1I	GCAGC	3 cut(s)	246, 321, 958
BstX2I	RGATCY	3 cut(s)	161, 734, 1006
BstXI	CCANNNNNNTGG	1 cut(s)	57
BstYI	RGATCY	3 cut(s)	161, 734, 1006
BsuI	GTATCC	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	869
BtgI	CCRYGG	2 cut(s)	124, 685
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	142, 648, 748
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	5 cut(s)	678, 845, 849, 867, 876
CaiI	CAGNNNCTG	1 cut(s)	713
CfoI	GCGC	1 cut(s)	843
Cfr13I	GGNCC	2 cut(s)	617, 868
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	6 cut(s)	11, 125, 319, 673, 1001, 1076
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	7 cut(s)	261, 384, 393, 438, 498, 908, 1010
DpnI	GATC	7 cut(s)	163, 206, 284, 292, 736, 913, 1008
DpnII	GATC	7 cut(s)	161, 204, 282, 290, 734, 911, 1006
DraIII	CACNNNGTG	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	617
Eco57I	CTGAAG	3 cut(s)	476, 900, 992
Eco88I	CYCGRG	2 cut(s)	738, 983
EcoRII	CCWGG	4 cut(s)	229, 303, 730, 994
EcoT14I	CCWWGG	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	6 cut(s)	14, 128, 322, 676, 1004, 1079
FaqI	GGGAC	1 cut(s)	15
FatI	CATG	6 cut(s)	10, 124, 318, 672, 1000, 1075
FauI	CCCGC	1 cut(s)	706
FauNDI	CATATG	2 cut(s)	85, 106
Fnu4HI	GCNGC	3 cut(s)	235, 310, 947
FokI	GGATG	3 cut(s)	129, 655, 755
Fsp4HI	GCNGC	3 cut(s)	235, 310, 947
FspBI	CTAG	3 cut(s)	722, 834, 1087
FspI	TGCGCA	1 cut(s)	842
GlaI	GCGC	1 cut(s)	842
GluI	GCNGC	3 cut(s)	235, 310, 947
GsaI	CCCAGC	1 cut(s)	874
GsuI	CTGGAG	3 cut(s)	690, 714, 735
HaeIII	GGCC	1 cut(s)	869
HapII	CCGG	2 cut(s)	158, 327
HhaI	GCGC	1 cut(s)	843
Hin1II	CATG	6 cut(s)	14, 128, 322, 676, 1004, 1079
Hin6I	GCGC	1 cut(s)	841
HinP1I	GCGC	1 cut(s)	841
HincII	GTYRAC	1 cut(s)	922
HindII	GTYRAC	1 cut(s)	922
HinfI	GANTC	3 cut(s)	446, 476, 818
HpaI	GTTAAC	1 cut(s)	922
HpaII	CCGG	2 cut(s)	158, 327
HphI	GGTGA	3 cut(s)	32, 38, 500
Hpy166II	GTNNAC	1 cut(s)	922
Hpy188I	TCNGA	8 cut(s)	262, 441, 501, 911, 916, 958, 1011, 1056
Hpy188III	TCNNGA	4 cut(s)	357, 462, 740, 931
Hpy8I	GTNNAC	1 cut(s)	922
Hpy99I	CGWCG	1 cut(s)	831
HpyAV	CCTTC	6 cut(s)	401, 413, 462, 479, 685, 967
HpyCH4V	TGCA	8 cut(s)	113, 431, 494, 515, 623, 680, 1061, 1075
HpyF10VI	GCNNNNNNNGC	8 cut(s)	76, 309, 596, 605, 677, 802, 871, 875
HpyF3I	CTNAG	7 cut(s)	261, 384, 393, 438, 498, 908, 1010
Hsp92II	CATG	6 cut(s)	14, 128, 322, 676, 1004, 1079
HspAI	GCGC	1 cut(s)	841
KspAI	GTTAAC	1 cut(s)	922
Kzo9I	GATC	7 cut(s)	161, 204, 282, 290, 734, 911, 1006
LmnI	GCTCC	2 cut(s)	359, 604
Lsp1109I	GCAGC	3 cut(s)	246, 321, 958
LweI	GCATC	5 cut(s)	32, 418, 481, 503, 936
MaeI	CTAG	3 cut(s)	722, 834, 1087
MaeIII	GTNAC	7 cut(s)	221, 276, 443, 724, 765, 1025, 1082
MalI	GATC	7 cut(s)	163, 206, 284, 292, 736, 913, 1008
MboI	GATC	7 cut(s)	161, 204, 282, 290, 734, 911, 1006
MboII	GAAGA	2 cut(s)	657, 1016
MfeI	CAATTG	1 cut(s)	573
MflI	RGATCY	3 cut(s)	161, 734, 1006
MhlI	GDGCHC	3 cut(s)	601, 661, 751
MluCI	AATT	5 cut(s)	433, 520, 541, 573, 990
MlyI	GAGTC	1 cut(s)	440
Mph1103I	ATGCAT	1 cut(s)	496
MseI	TTAA	4 cut(s)	314, 786, 887, 921
MslI	CAYNNNNRTG	2 cut(s)	55, 105
MspA1I	CMGCKG	2 cut(s)	590, 796
MspI	CCGG	2 cut(s)	158, 327
MspR9I	CCNGG	5 cut(s)	159, 231, 305, 732, 996
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	967
MvaI	CCWGG	4 cut(s)	231, 305, 732, 996
MwoI	GCNNNNNNNGC	8 cut(s)	76, 309, 596, 605, 677, 802, 871, 875
NciI	CCSGG	1 cut(s)	159
NcoI	CCATGG	1 cut(s)	124
NdeI	CATATG	2 cut(s)	85, 106
NdeII	GATC	7 cut(s)	161, 204, 282, 290, 734, 911, 1006
NlaIII	CATG	6 cut(s)	14, 128, 322, 676, 1004, 1079
NlaIV	GGNNCC	3 cut(s)	361, 658, 696
NmeAIII	GCCGAG	1 cut(s)	344
NmuCI	GTSAC	3 cut(s)	443, 1025, 1082
NsbI	TGCGCA	1 cut(s)	842
NsiI	ATGCAT	1 cut(s)	496
PctI	GAATGC	1 cut(s)	967
PfeI	GAWTC	2 cut(s)	476, 818
PflMI	CCANNNNNTGG	1 cut(s)	713
PfoI	TCCNGGA	2 cut(s)	157, 730
PkrI	GCNGC	3 cut(s)	236, 311, 948
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
Psp6I	CCWGG	4 cut(s)	229, 303, 730, 994
PspFI	CCCAGC	1 cut(s)	870
PspGI	CCWGG	4 cut(s)	229, 303, 730, 994
PspN4I	GGNNCC	3 cut(s)	361, 658, 696
PspPI	GGNCC	2 cut(s)	617, 868
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	3 cut(s)	161, 734, 1006
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	2 cut(s)	55, 105
SaqAI	TTAA	4 cut(s)	314, 786, 887, 921
SatI	GCNGC	3 cut(s)	235, 310, 947
Sau3AI	GATC	7 cut(s)	161, 204, 282, 290, 734, 911, 1006
Sau96I	GGNCC	2 cut(s)	617, 868
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	5 cut(s)	159, 231, 305, 732, 996
SduI	GDGCHC	3 cut(s)	601, 661, 751
SfaNI	GCATC	5 cut(s)	32, 418, 481, 503, 936
SinI	GGWCC	1 cut(s)	617
SmiMI	CAYNNNNRTG	2 cut(s)	55, 105
SpeI	ACTAGT	1 cut(s)	721
Sse9I	AATT	5 cut(s)	433, 520, 541, 573, 990
SsiI	CCGC	3 cut(s)	699, 796, 925
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	3 cut(s)	722, 834, 1087
StyD4I	CCNGG	5 cut(s)	157, 229, 303, 730, 994
StyI	CCWWGG	1 cut(s)	124
TasI	AATT	5 cut(s)	433, 520, 541, 573, 990
TfiI	GAWTC	2 cut(s)	476, 818
Tru1I	TTAA	4 cut(s)	314, 786, 887, 921
Tru9I	TTAA	4 cut(s)	314, 786, 887, 921
TscAI	CASTG	1 cut(s)	558
TseFI	GTSAC	3 cut(s)	443, 1025, 1082
TseI	GCWGC	3 cut(s)	234, 309, 946
Tsp45I	GTSAC	3 cut(s)	443, 1025, 1082
TspDTI	ATGAA	3 cut(s)	789, 909, 1017
TspGWI	ACGGA	1 cut(s)	674
TspRI	CASTG	1 cut(s)	558
Van91I	CCANNNNNTGG	1 cut(s)	713
VpaK11BI	GGWCC	1 cut(s)	617
XapI	RAATTY	3 cut(s)	433, 541, 990
XspI	CTAG	3 cut(s)	722, 834, 1087
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.