Rh7DG270700
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
29058239 .. 29065658
7420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG270700.1

Sequence Viewer

Length: 1149 bp
ATGGGTAGCAGCGAGATGGATAAACCAGCTAAAGAGAAAGAGAAGGAGTTGAAGACGACGCCTCCTACTACTCAGGAGCAGCAGTCTGCTACCACTAGCGCTGGCACTGTTAATCCTGATTGGTCCGGATTTCAGGCATATTCTCCTATGCCTCCACATGGGTTTATGGCATCAAGTCCCCAAGCTCACCCTCACCCATATATGTGGGGCGTTCAGCATATTATGCCTCCATATGGTACTCCTCCACACCCATATGTTGCAATGTATCCCCATGGTGGCTTATATGCTCATCCATCCATGCCTCCGGGATCTTACCCTTTCAGCCCTTTTGCTATGCCCTCGCCAAATGGGATCGTAGAGGCTTCTGGTAACACACCTGGCAGCATAGAAGCAGATGGTAAGCCATCTGAGGCAAAGGAAAAGTTACCGATCAAAAGATCAAAAGGAAGCCTGGGCAGCTTAAACATGATTACCGGAAAGAATAATGAGCTTCCTAAAACATCAGGAGCCTCGGCTAATGGAGTTTATTCTAAGAGTGCTGAGAGTGGTAGTGAAGGCACAAGTGAAGGAAGCGATGCAAATTCTCAGAGTGACTCACAACTGAAGTCAGGAGGAAGGGGAGATTCTTTGGAAGGTGATGCATCTCAGAATGGTGGTTCTGCACATAATTCTCAAAATGGAACACCAAATTCTCACGCAGTGTTGAACCCCACAATGGCAATTGTGCCAATGACAGCTGCTGGTGCTCCCATTGCCGTTTCTGGTCCTGCAACAAACCTAAATATTGGGATGGACTATTGGGGTGCCCCATCTTCTGCCATGCCTGCAATCCGTGGGAAGGTTCCCGCTACTCCAGTTGCTGGAGGACTAGTTACTCCAGGATCTCGGGATGGTGCTCAATCACAGCTTTGGTTACAAGATGAAAGAGAGCTTAAAAGACAGCGGAGAAAGCAGTCAAATAGGGAATCTGCTCGTCGTTCTAGGTTGCGCAAGCAGGCTGAATGTGATGAGCTGGCCCAGCGTGCTGAAGTCTTAAAAGATGAAAATGCCACACTCAGATCAGAAGTTAACCACATCAGGAGTGAGTATGAGCAGCTTCTTTCAGAGAATGCCTCCCTGAAGGTAACGCTTAGTTTAGGTTTTGTTTAG

Protein Analysis

382

Amino Acids

40.4

Weight (kDa)

6.81

Isoelectric Point (pI)

61.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFMR PF07777 1 - 101 2e-28 G-box binding protein MFMR
MFMR_assoc PF16596 140 - 273 4.5e-53 Disordered region downstream of MFMR
bZIP_1 PF00170 308 - 370 5.5e-21 bZIP transcription factor
bZIP_2 PF07716 310 - 359 1.1e-07 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 989
AccB1I GGYRCC 1 cut(s) 803
AccB7I CCANNNNNTGG 1 cut(s) 860
AccIII TCCGGA 1 cut(s) 125
AciI CCGC 2 cut(s) 846, 943
AclWI GGATC 3 cut(s) 316, 359, 889
AcsI RAATTY 2 cut(s) 580, 688
AcuI CTGAAG 3 cut(s) 623, 1047, 1139
AcyI GRCGYC 1 cut(s) 59
AdeI CACNNNGTG 1 cut(s) 700
AfaI GTAC 1 cut(s) 238
AfeI AGCGCT 1 cut(s) 100
AfiI CCNNNNNNNGG 6 cut(s) 158, 233, 275, 715, 838, 860
AgsI TTSAA 2 cut(s) 52, 706
AhlI ACTAGT 1 cut(s) 868
AjnI CCWGG 3 cut(s) 376, 450, 877
AluBI AGCT 9 cut(s) 29, 185, 459, 490, 737, 907, 931, 1012, 1096
AluI AGCT 9 cut(s) 29, 185, 459, 490, 737, 907, 931, 1012, 1096
Alw21I GWGCWC 2 cut(s) 748, 898
AlwI GGATC 3 cut(s) 316, 359, 889
AlwNI CAGNNNCTG 2 cut(s) 740, 860
Ama87I CYCGRG 1 cut(s) 885
Aor13HI TCCGGA 1 cut(s) 125
Aor51HI AGCGCT 1 cut(s) 100
AoxI GGCC 1 cut(s) 1014
ApeKI GCWGC 6 cut(s) 9, 79, 381, 456, 737, 1093
ApoI RAATTY 2 cut(s) 580, 688
AspLEI GCGC 2 cut(s) 101, 990
AspS9I GGNCC 3 cut(s) 123, 764, 1015
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 3 cut(s) 179, 185, 647
AvaI CYCGRG 1 cut(s) 885
AvaII GGWCC 2 cut(s) 123, 764
BaeGI GKGCMC 1 cut(s) 808
BanI GGYRCC 1 cut(s) 803
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 748, 898
BbvI GCAGC 6 cut(s) 21, 91, 393, 468, 724, 1105
BccI CCATC 7 cut(s) 10, 301, 389, 412, 784, 817, 884
BceAI ACGGC 1 cut(s) 740
BciT130I CCWGG 3 cut(s) 378, 452, 879
BciVI GTATCC 1 cut(s) 276
BcnI CCSGG 1 cut(s) 306
BcuI ACTAGT 1 cut(s) 868
BfaI CTAG 3 cut(s) 96, 869, 981
BfoI RGCGCY 1 cut(s) 102
BfuI GTATCC 1 cut(s) 276
BisI GCNGC 6 cut(s) 10, 80, 382, 457, 738, 1094
BlsI GCNGC 6 cut(s) 11, 81, 383, 458, 739, 1095
Bme1390I CCNGG 4 cut(s) 306, 378, 452, 879
Bme18I GGWCC 2 cut(s) 123, 764
BmeT110I CYCGRG 1 cut(s) 885
BmgT120I GGNCC 3 cut(s) 123, 764, 1015
BmiI GGNNCC 3 cut(s) 508, 805, 843
BmrFI CCNGG 4 cut(s) 306, 378, 452, 879
BmsI GCATC 4 cut(s) 179, 565, 628, 650
BpiI GAAGAC 1 cut(s) 59
BplI GAGNNNNNCTC 2 cut(s) 1097, 1129
BpmI CTGGAG 3 cut(s) 837, 861, 882
BpuMI CCSGG 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 4 cut(s) 271, 451, 510, 832
BsaWI WCCGGW 2 cut(s) 125, 473
BsaXI ACNNNNNCTCC 6 cut(s) 46, 68, 76, 98, 855, 885
Bsc4I CCNNNNNNNGG 6 cut(s) 158, 233, 275, 715, 838, 860
Bse1I ACTGG 1 cut(s) 854
Bse3DI GCAATG 2 cut(s) 267, 750
BseAI TCCGGA 1 cut(s) 125
BseBI CCWGG 3 cut(s) 378, 452, 879
BseDI CCNNGG 4 cut(s) 271, 451, 510, 832
BseGI GGATG 4 cut(s) 289, 293, 795, 895
BseLI CCNNNNNNNGG 6 cut(s) 158, 233, 275, 715, 838, 860
BseMI GCAATG 2 cut(s) 267, 750
BseMII CTCAG 6 cut(s) 86, 399, 531, 599, 659, 1069
BseNI ACTGG 1 cut(s) 854
BseRI GAGGAG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 808
BseXI GCAGC 6 cut(s) 21, 91, 393, 468, 724, 1105
BseYI CCCAGC 1 cut(s) 1017
BsgI GTGCAG 1 cut(s) 645
BshFI GGCC 1 cut(s) 1016
BshNI GGYRCC 1 cut(s) 803
BsiHKAI GWGCWC 2 cut(s) 748, 898
BsiHKCI CYCGRG 1 cut(s) 885
BsiSI CCGG 3 cut(s) 126, 305, 474
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 6 cut(s) 158, 233, 275, 715, 838, 860
BsmFI GGGAC 1 cut(s) 162
BsmI GAATGC 1 cut(s) 1114
BsnI GGCC 1 cut(s) 1016
BsoBI CYCGRG 1 cut(s) 885
Bsp1286I GDGCHC 3 cut(s) 748, 808, 898
Bsp13I TCCGGA 1 cut(s) 125
Bsp143I GATC 6 cut(s) 308, 351, 429, 437, 881, 1058
Bsp19I CCATGG 1 cut(s) 271
BspACI CCGC 2 cut(s) 846, 943
BspANI GGCC 1 cut(s) 1016
BspCNI CTCAG 6 cut(s) 85, 400, 532, 598, 658, 1068
BspEI TCCGGA 1 cut(s) 125
BspLI GGNNCC 3 cut(s) 508, 805, 843
BspPI GGATC 3 cut(s) 316, 359, 889
BspT107I GGYRCC 1 cut(s) 803
BsrDI GCAATG 2 cut(s) 267, 750
BsrI ACTGG 1 cut(s) 854
BssECI CCNNGG 4 cut(s) 271, 451, 510, 832
BssMI GATC 6 cut(s) 308, 351, 429, 437, 881, 1058
BssNI GRCGYC 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 271
Bst2UI CCWGG 3 cut(s) 378, 452, 879
Bst4CI ACNGT 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 223
BstC8I GCNNGC 6 cut(s) 103, 825, 992, 996, 1014, 1023
BstDEI CTNAG 8 cut(s) 72, 408, 531, 540, 585, 645, 1055, 1130
BstDSI CCRYGG 2 cut(s) 271, 832
BstF5I GGATG 4 cut(s) 289, 293, 795, 895
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 2 cut(s) 101, 990
BstKTI GATC 6 cut(s) 311, 354, 432, 440, 884, 1061
BstMBI GATC 6 cut(s) 308, 351, 429, 437, 881, 1058
BstMWI GCNNNNNNNGC 8 cut(s) 223, 456, 743, 752, 824, 949, 1018, 1022
BstNI CCWGG 3 cut(s) 378, 452, 879
BstSCI CCNGG 4 cut(s) 304, 376, 450, 877
BstSLI GKGCMC 1 cut(s) 808
BstV1I GCAGC 6 cut(s) 21, 91, 393, 468, 724, 1105
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 2 cut(s) 308, 881
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 2 cut(s) 308, 881
BsuI GTATCC 1 cut(s) 276
BsuRI GGCC 1 cut(s) 1016
BtgI CCRYGG 2 cut(s) 271, 832
BtgZI GCGATG 1 cut(s) 588
BtsCI GGATG 4 cut(s) 289, 293, 795, 895
BtsI GCAGTG 1 cut(s) 705
BtsIMutI CAGTG 2 cut(s) 105, 705
Cac8I GCNNGC 6 cut(s) 103, 825, 992, 996, 1014, 1023
CaiI CAGNNNCTG 2 cut(s) 740, 860
CfoI GCGC 2 cut(s) 101, 990
Cfr13I GGNCC 3 cut(s) 123, 764, 1015
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 237
CviAII CATG 5 cut(s) 158, 272, 298, 466, 820
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 8 cut(s) 72, 408, 531, 540, 585, 645, 1055, 1130
DpnI GATC 6 cut(s) 310, 353, 431, 439, 883, 1060
DpnII GATC 6 cut(s) 308, 351, 429, 437, 881, 1058
DraIII CACNNNGTG 1 cut(s) 700
Eco130I CCWWGG 1 cut(s) 271
Eco47I GGWCC 2 cut(s) 123, 764
Eco47III AGCGCT 1 cut(s) 100
Eco57I CTGAAG 3 cut(s) 623, 1047, 1139
Eco88I CYCGRG 1 cut(s) 885
EcoRII CCWGG 3 cut(s) 376, 450, 877
EcoT14I CCWWGG 1 cut(s) 271
EcoT22I ATGCAT 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 5 cut(s) 161, 275, 301, 469, 823
FaqI GGGAC 1 cut(s) 162
FatI CATG 5 cut(s) 157, 271, 297, 465, 819
FauI CCCGC 1 cut(s) 853
FauNDI CATATG 2 cut(s) 232, 253
Fnu4HI GCNGC 6 cut(s) 10, 80, 382, 457, 738, 1094
FokI GGATG 4 cut(s) 276, 280, 802, 902
Fsp4HI GCNGC 6 cut(s) 10, 80, 382, 457, 738, 1094
FspBI CTAG 3 cut(s) 96, 869, 981
FspI TGCGCA 1 cut(s) 989
GlaI GCGC 2 cut(s) 100, 989
GluI GCNGC 6 cut(s) 10, 80, 382, 457, 738, 1094
GsaI CCCAGC 1 cut(s) 1021
GsuI CTGGAG 3 cut(s) 837, 861, 882
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 1 cut(s) 1016
HapII CCGG 3 cut(s) 126, 305, 474
HgaI GACGC 1 cut(s) 67
HhaI GCGC 2 cut(s) 101, 990
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 5 cut(s) 161, 275, 301, 469, 823
Hin6I GCGC 2 cut(s) 99, 988
HinP1I GCGC 2 cut(s) 99, 988
HincII GTYRAC 1 cut(s) 1069
HindII GTYRAC 1 cut(s) 1069
HinfI GANTC 3 cut(s) 593, 623, 965
HpaI GTTAAC 1 cut(s) 1069
HpaII CCGG 3 cut(s) 126, 305, 474
HphI GGTGA 3 cut(s) 179, 185, 647
Hpy166II GTNNAC 1 cut(s) 1069
Hpy188I TCNGA 6 cut(s) 409, 588, 648, 1058, 1063, 1105
Hpy188III TCNNGA 7 cut(s) 74, 116, 126, 504, 609, 887, 1078
Hpy8I GTNNAC 1 cut(s) 1069
Hpy99I CGWCG 2 cut(s) 61, 978
HpyAV CCTTC 7 cut(s) 37, 548, 560, 609, 626, 832, 1114
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 6 cut(s) 260, 578, 641, 662, 770, 827
HpyF10VI GCNNNNNNNGC 8 cut(s) 223, 456, 743, 752, 824, 949, 1018, 1022
HpyF3I CTNAG 8 cut(s) 72, 408, 531, 540, 585, 645, 1055, 1130
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 5 cut(s) 161, 275, 301, 469, 823
HspAI GCGC 2 cut(s) 99, 988
Kpn2I TCCGGA 1 cut(s) 125
KspAI GTTAAC 1 cut(s) 1069
Kzo9I GATC 6 cut(s) 308, 351, 429, 437, 881, 1058
LmnI GCTCC 3 cut(s) 76, 506, 751
Lsp1109I GCAGC 6 cut(s) 21, 91, 393, 468, 724, 1105
LweI GCATC 4 cut(s) 179, 565, 628, 650
MaeI CTAG 3 cut(s) 96, 869, 981
MaeIII GTNAC 6 cut(s) 368, 423, 590, 871, 912, 1123
MalI GATC 6 cut(s) 310, 353, 431, 439, 883, 1060
MboI GATC 6 cut(s) 308, 351, 429, 437, 881, 1058
MboII GAAGA 2 cut(s) 64, 804
MfeI CAATTG 1 cut(s) 720
MflI RGATCY 2 cut(s) 308, 881
MhlI GDGCHC 3 cut(s) 748, 808, 898
MluCI AATT 4 cut(s) 580, 667, 688, 720
MlyI GAGTC 1 cut(s) 587
Mph1103I ATGCAT 1 cut(s) 643
MroI TCCGGA 1 cut(s) 125
MseI TTAA 5 cut(s) 111, 461, 933, 1034, 1068
MslI CAYNNNNRTG 2 cut(s) 202, 252
MspA1I CMGCKG 2 cut(s) 737, 943
MspI CCGG 3 cut(s) 126, 305, 474
MspR9I CCNGG 4 cut(s) 306, 378, 452, 879
MunI CAATTG 1 cut(s) 720
Mva1269I GAATGC 1 cut(s) 1114
MvaI CCWGG 3 cut(s) 378, 452, 879
MwoI GCNNNNNNNGC 8 cut(s) 223, 456, 743, 752, 824, 949, 1018, 1022
NciI CCSGG 1 cut(s) 306
NcoI CCATGG 1 cut(s) 271
NdeI CATATG 2 cut(s) 232, 253
NdeII GATC 6 cut(s) 308, 351, 429, 437, 881, 1058
NlaIII CATG 5 cut(s) 161, 275, 301, 469, 823
NlaIV GGNNCC 3 cut(s) 508, 805, 843
NmeAIII GCCGAG 1 cut(s) 491
NmuCI GTSAC 1 cut(s) 590
NsbI TGCGCA 1 cut(s) 989
NsiI ATGCAT 1 cut(s) 643
PctI GAATGC 1 cut(s) 1114
PfeI GAWTC 2 cut(s) 623, 965
PflMI CCANNNNNTGG 1 cut(s) 860
PfoI TCCNGGA 2 cut(s) 304, 877
PkrI GCNGC 6 cut(s) 11, 81, 383, 458, 739, 1095
PleI GAGTC 1 cut(s) 587
PpsI GAGTC 1 cut(s) 587
Psp6I CCWGG 3 cut(s) 376, 450, 877
PspFI CCCAGC 1 cut(s) 1017
PspGI CCWGG 3 cut(s) 376, 450, 877
PspN4I GGNNCC 3 cut(s) 508, 805, 843
PspPI GGNCC 3 cut(s) 123, 764, 1015
PstNI CAGNNNCTG 2 cut(s) 740, 860
PsuI RGATCY 2 cut(s) 308, 881
PvuII CAGCTG 1 cut(s) 737
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
RseI CAYNNNNRTG 2 cut(s) 202, 252
SaqAI TTAA 5 cut(s) 111, 461, 933, 1034, 1068
SatI GCNGC 6 cut(s) 10, 80, 382, 457, 738, 1094
Sau3AI GATC 6 cut(s) 308, 351, 429, 437, 881, 1058
Sau96I GGNCC 3 cut(s) 123, 764, 1015
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 4 cut(s) 306, 378, 452, 879
SduI GDGCHC 3 cut(s) 748, 808, 898
SfaNI GCATC 4 cut(s) 179, 565, 628, 650
SinI GGWCC 2 cut(s) 123, 764
SmiMI CAYNNNNRTG 2 cut(s) 202, 252
SpeI ACTAGT 1 cut(s) 868
Sse9I AATT 4 cut(s) 580, 667, 688, 720
SsiI CCGC 2 cut(s) 846, 943
SspI AATATT 1 cut(s) 784
SspMI CTAG 3 cut(s) 96, 869, 981
StyD4I CCNGG 4 cut(s) 304, 376, 450, 877
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 1 cut(s) 109
TasI AATT 4 cut(s) 580, 667, 688, 720
TfiI GAWTC 2 cut(s) 623, 965
Tru1I TTAA 5 cut(s) 111, 461, 933, 1034, 1068
Tru9I TTAA 5 cut(s) 111, 461, 933, 1034, 1068
TscAI CASTG 2 cut(s) 112, 705
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 6 cut(s) 9, 79, 381, 456, 737, 1093
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 2 cut(s) 936, 1056
TspGWI ACGGA 1 cut(s) 821
TspRI CASTG 2 cut(s) 112, 705
Van91I CCANNNNNTGG 1 cut(s) 860
VpaK11BI GGWCC 2 cut(s) 123, 764
XapI RAATTY 2 cut(s) 580, 688
XspI CTAG 3 cut(s) 96, 869, 981
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.