Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010404

Physical Location & Seq

Genomic Coordinates Reverse (-)

14996713 .. 14999125

Gene Structure 2413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTATATCAAAGAACTGACGGAAACGGATGAGGAGAAGAGGGAGAGATCGGTTGAGGATAACGTTGATGATGGAGATAAGGCGGTATTGGTGAGCAGAGGAAACGTGATTGTGTTGACTACAAAGAGGGCACTCGTTGGTGTTGGTGCTCGTGCTTTGTTTTATCCTACTCTGGTTTACAACGTTGTTAGGAATAAGCTCGAATCTGAGTTTCGCTGGTGGGATCGCGTGGCTGAGTTTATATTACTGGGAGCTGTTCCATTTCCATCTGATGTTCCACAGCTGAAAGAGCTCGGTGTTTGTGGAGTGATCACTCTGAATGAGCCATATGAAACTTTGGTTCCATCGTCTCTCTACAAATCTTACTGCATTGACCACCTGGTGATTGCTACAAGAGATTATTGTTTTGCTCCTTCCATGGAAGCAATATGCCAAGCTGTAGAATTTATCCATAGAAATGCTTCGCTTGGAAAGACGACTTATGTTCACTGCAAAGCGGGTCGGGGTCGCAGCACAACTATTGTCATATGCTACTTGGTTCAACACAAAAACATGACACCTGAAGCAGCATATTCCTACGTGAGATCAATCAGGCCCAGGGTTCTTTTAGCAGCAGCCCAATGGAAGGCCGTTGTTGAGTACTACCATGTCAAGGTGCTGAATACTCAGAGTTGCTTAACTGATGCAACTTCAGCTTTGATCCCGAGAAATGTGAAGCAGGTTTGTTCTGGGAATGTAGTGGTGTTTGATGATGGGTCAATGGTTGTAGTCACCCACTCGGATCTAGAGGGCTATAATGATGATGACTCACGGTCACGGAGGTCAGTGAAAGTTAATGGGAATGAGCTATGGGCGGCAGCTGCAGATCTGAGCATGGTGTACAGGGTGAAAGTGGTGGGGCAGGCTGCGATGGCGAGGATATCGTGTCTGTGGCTGGGCTTGCGTGAGGACCAAAAGCTTTCTGGGAAAAATCTTTCCATGGGAGGCATAAGCGTCGACATTTCTGTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

337

Amino Acids

37.55

Weight (kDa)

7.53

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	90 - 190	8.7e-12	Swiss Army Knife protein, DSP-PTPase phosphatase domain
Tc-R-P	PF22785	93 - 182	2.7e-10	Polymorphic toxin system, DSP-PTPase phosphatase
DSPc	PF00782	128 - 215	4.8e-18	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35680
fragaria_vesca	FvH4_5g19640
malus_domestica	MD04G1061500.v1.1 MD06G1055300.v1.1
prunus_persica	Prupe.5G063900_v2.0.a1
pyrus_communis	pycom04g05520 pycom06g04630
rosa_chinensis	RchiOBHm_Chr7g0204371
rosa_laevigata	RLG00000003469
rosa_multiflora	Rmu_co8379943.1_g000001 Rmu_co8450077.1_g000001 Rmu_sc0002918.1_g000007 Rmu_sc0012666.1_g000001 Rmu_sc0014168.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253190
rosa_rugosa	Rorug07G0082600
rosa_samantha	Rh7AG212900 Rh7BG211000 Rh7CG226000 Rh7DG220200
rosa_wichuraiana	Rw7G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1004
Acc36I	ACCTGC	1 cut(s)	709
AccI	GTMKAC	2 cut(s)	996, 1008
AccII	CGCG	1 cut(s)	228
AciI	CCGC	3 cut(s)	83, 497, 854
AclI	AACGTT	2 cut(s)	63, 183
AclWI	GGATC	3 cut(s)	231, 694, 789
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	2 cut(s)	582, 675
AdeI	CACNNNGTG	1 cut(s)	382
AfaI	GTAC	2 cut(s)	641, 881
AfiI	CCNNNNNNNGG	2 cut(s)	625, 652
AgsI	TTSAA	1 cut(s)	542
AhdI	GACNNNNNGTC	1 cut(s)	811
AjnI	CCWGG	2 cut(s)	378, 596
AluBI	AGCT	9 cut(s)	199, 254, 283, 292, 437, 695, 847, 860, 958
AluI	AGCT	9 cut(s)	199, 254, 283, 292, 437, 695, 847, 860, 958
Alw21I	GWGCWC	2 cut(s)	151, 294
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	3 cut(s)	231, 694, 789
Ama87I	CYCGRG	1 cut(s)	703
AoxI	GGCC	2 cut(s)	593, 627
ApeKI	GCWGC	7 cut(s)	510, 566, 611, 614, 857, 860, 905
ApoI	RAATTY	1 cut(s)	443
Asp700I	GAANNNNTTC	1 cut(s)	460
AspS9I	GGNCC	2 cut(s)	594, 949
AsuHPI	GGTGA	4 cut(s)	103, 394, 763, 898
AvaI	CYCGRG	1 cut(s)	703
AvaII	GGWCC	1 cut(s)	949
BaeGI	GKGCMC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	294
BauI	CACGAG	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	151, 294
BbvI	GCAGC	7 cut(s)	522, 578, 623, 626, 847, 869, 892
BccI	CCATC	5 cut(s)	65, 274, 352, 746, 904
BceAI	ACGGC	1 cut(s)	614
BcgI	CGANNNNNNTGC	2 cut(s)	976, 1010
BciT130I	CCWGG	2 cut(s)	380, 598
BclI	TGATCA	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	1 cut(s)	785
BfmI	CTRYAG	2 cut(s)	438, 861
BfuAI	ACCTGC	1 cut(s)	709
BglII	AGATCT	1 cut(s)	865
BisI	GCNGC	8 cut(s)	511, 567, 612, 615, 855, 858, 861, 906
BlsI	GCNGC	8 cut(s)	512, 568, 613, 616, 856, 859, 862, 907
BmcAI	AGTACT	1 cut(s)	641
Bme1390I	CCNGG	2 cut(s)	380, 598
Bme18I	GGWCC	1 cut(s)	949
BmeRI	GACNNNNNGTC	1 cut(s)	811
BmeT110I	CYCGRG	1 cut(s)	703
BmgT120I	GGNCC	2 cut(s)	594, 949
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	2 cut(s)	380, 598
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	673
BmuI	ACTGGG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	580
BsaJI	CCNNGG	4 cut(s)	417, 596, 597, 978
Bsc4I	CCNNNNNNNGG	2 cut(s)	625, 652
Bse1I	ACTGG	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	380, 598
BseDI	CCNNGG	4 cut(s)	417, 596, 597, 978
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	2 cut(s)	625, 652
BseMII	CTCAG	4 cut(s)	198, 225, 680, 860
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	7 cut(s)	522, 578, 623, 626, 847, 869, 892
BseYI	CCCAGC	1 cut(s)	934
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	595, 629
BsiHKAI	GWGCWC	2 cut(s)	151, 294
BsiHKCI	CYCGRG	1 cut(s)	703
BslI	CCNNNNNNNGG	2 cut(s)	625, 652
BsmAI	GTCTC	1 cut(s)	354
BsmBI	CGTCTC	1 cut(s)	354
BsnI	GGCC	2 cut(s)	595, 629
BsoBI	CYCGRG	1 cut(s)	703
Bsp1286I	GDGCHC	3 cut(s)	133, 151, 294
Bsp1407I	TGTACA	1 cut(s)	879
Bsp143I	GATC	7 cut(s)	47, 223, 309, 584, 699, 781, 865
Bsp19I	CCATGG	2 cut(s)	417, 978
BspACI	CCGC	3 cut(s)	83, 497, 854
BspANI	GGCC	2 cut(s)	595, 629
BspCNI	CTCAG	4 cut(s)	199, 226, 679, 861
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	342
BspMAI	CTGCAG	1 cut(s)	865
BspMI	ACCTGC	1 cut(s)	709
BspPI	GGATC	3 cut(s)	231, 694, 789
BsrGI	TGTACA	1 cut(s)	879
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	4 cut(s)	417, 596, 597, 978
BssMI	GATC	7 cut(s)	47, 223, 309, 584, 699, 781, 865
BssSI	CACGAG	1 cut(s)	150
BssT1I	CCWWGG	2 cut(s)	417, 978
Bst2BI	CACGAG	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	380, 598
Bst4CI	ACNGT	1 cut(s)	813
Bst6I	CTCTTC	1 cut(s)	32
BstAUI	TGTACA	1 cut(s)	879
BstBAI	YACGTR	1 cut(s)	580
BstC8I	GCNNGC	2 cut(s)	903, 941
BstDEI	CTNAG	4 cut(s)	207, 234, 666, 869
BstDSI	CCRYGG	2 cut(s)	417, 978
BstF5I	GGATG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	228
BstKTI	GATC	7 cut(s)	50, 226, 312, 587, 702, 784, 868
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	7 cut(s)	47, 223, 309, 584, 699, 781, 865
BstMWI	GCNNNNNNNGC	5 cut(s)	289, 692, 860, 911, 940
BstNI	CCWGG	2 cut(s)	380, 598
BstSCI	CCNGG	2 cut(s)	378, 596
BstSFI	CTRYAG	2 cut(s)	438, 861
BstSLI	GKGCMC	1 cut(s)	133
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	7 cut(s)	522, 578, 623, 626, 847, 869, 892
BstX2I	RGATCY	2 cut(s)	781, 865
BstYI	RGATCY	2 cut(s)	781, 865
BsuRI	GGCC	2 cut(s)	595, 629
BtgI	CCRYGG	2 cut(s)	417, 978
BtgZI	GCGATG	1 cut(s)	923
BtsCI	GGATG	1 cut(s)	34
BtsI	GCAGTG	1 cut(s)	487
BtsIMutI	CAGTG	2 cut(s)	487, 831
BveI	ACCTGC	1 cut(s)	709
Cac8I	GCNNGC	2 cut(s)	903, 941
Cfr13I	GGNCC	2 cut(s)	594, 949
CseI	GACGC	1 cut(s)	982
CsiI	ACCWGGT	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	640, 880
CviAII	CATG	5 cut(s)	418, 553, 647, 874, 979
CviQI	GTAC	2 cut(s)	640, 880
DdeI	CTNAG	4 cut(s)	207, 234, 666, 869
DpnI	GATC	7 cut(s)	49, 225, 311, 586, 701, 783, 867
DpnII	GATC	7 cut(s)	47, 223, 309, 584, 699, 781, 865
DraIII	CACNNNGTG	1 cut(s)	382
DrdI	GACNNNNNNGTC	1 cut(s)	1004
DriI	GACNNNNNGTC	1 cut(s)	811
DseDI	GACNNNNNNGTC	1 cut(s)	1004
Eam1104I	CTCTTC	1 cut(s)	32
Eam1105I	GACNNNNNGTC	1 cut(s)	811
EarI	CTCTTC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	2 cut(s)	417, 978
Eco24I	GRGCYC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	921
Eco47I	GGWCC	1 cut(s)	949
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	2 cut(s)	582, 675
Eco88I	CYCGRG	1 cut(s)	703
EcoICRI	GAGCTC	1 cut(s)	292
EcoRII	CCWGG	2 cut(s)	378, 596
EcoRV	GATATC	1 cut(s)	921
EcoT14I	CCWWGG	2 cut(s)	417, 978
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	2 cut(s)	417, 978
Esp3I	CGTCTC	1 cut(s)	354
FaeI	CATG	5 cut(s)	421, 556, 650, 877, 982
FatI	CATG	5 cut(s)	417, 552, 646, 873, 978
FauI	CCCGC	1 cut(s)	490
FauNDI	CATATG	2 cut(s)	328, 527
FbaI	TGATCA	1 cut(s)	309
FblI	GTMKAC	2 cut(s)	996, 1008
Fnu4HI	GCNGC	8 cut(s)	511, 567, 612, 615, 855, 858, 861, 906
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	8 cut(s)	511, 567, 612, 615, 855, 858, 861, 906
FspBI	CTAG	1 cut(s)	785
GluI	GCNGC	8 cut(s)	511, 567, 612, 615, 855, 858, 861, 906
GsaI	CCCAGC	1 cut(s)	938
HaeIII	GGCC	2 cut(s)	595, 629
HgaI	GACGC	1 cut(s)	982
Hin1II	CATG	5 cut(s)	421, 556, 650, 877, 982
HincII	GTYRAC	2 cut(s)	117, 997
HindII	GTYRAC	2 cut(s)	117, 997
HindIII	AAGCTT	1 cut(s)	956
HinfI	GANTC	2 cut(s)	203, 806
HphI	GGTGA	4 cut(s)	103, 394, 763, 898
Hpy166II	GTNNAC	6 cut(s)	117, 178, 487, 880, 997, 1009
Hpy188I	TCNGA	6 cut(s)	208, 271, 318, 669, 781, 870
Hpy188III	TCNNGA	2 cut(s)	703, 785
Hpy8I	GTNNAC	6 cut(s)	117, 178, 487, 880, 997, 1009
Hpy99I	CGWCG	1 cut(s)	998
HpyAV	CCTTC	2 cut(s)	423, 619
HpyCH4III	ACNGT	1 cut(s)	813
HpyCH4IV	ACGT	4 cut(s)	63, 105, 183, 579
HpyCH4V	TGCA	4 cut(s)	369, 492, 686, 863
HpyF10VI	GCNNNNNNNGC	5 cut(s)	289, 692, 860, 911, 940
HpyF3I	CTNAG	4 cut(s)	207, 234, 666, 869
HpySE526I	ACGT	4 cut(s)	63, 105, 183, 579
Hsp92II	CATG	5 cut(s)	421, 556, 650, 877, 982
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	7 cut(s)	47, 223, 309, 584, 699, 781, 865
LmnI	GCTCC	2 cut(s)	251, 415
Lsp1109I	GCAGC	7 cut(s)	522, 578, 623, 626, 847, 869, 892
LweI	GCATC	1 cut(s)	673
MabI	ACCWGGT	1 cut(s)	378
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	4 cut(s)	63, 105, 183, 579
MaeIII	GTNAC	2 cut(s)	769, 813
MalI	GATC	7 cut(s)	49, 225, 311, 586, 701, 783, 867
MboI	GATC	7 cut(s)	47, 223, 309, 584, 699, 781, 865
MboII	GAAGA	1 cut(s)	49
MflI	RGATCY	2 cut(s)	781, 865
MhlI	GDGCHC	3 cut(s)	133, 151, 294
MluCI	AATT	1 cut(s)	443
MlyI	GAGTC	1 cut(s)	800
MroXI	GAANNNNTTC	1 cut(s)	460
MseI	TTAA	2 cut(s)	677, 834
MslI	CAYNNNNRTG	1 cut(s)	456
MspA1I	CMGCKG	2 cut(s)	283, 860
MspR9I	CCNGG	2 cut(s)	380, 598
MvaI	CCWGG	2 cut(s)	380, 598
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	5 cut(s)	289, 692, 860, 911, 940
NcoI	CCATGG	2 cut(s)	417, 978
NdeI	CATATG	2 cut(s)	328, 527
NdeII	GATC	7 cut(s)	47, 223, 309, 584, 699, 781, 865
NlaIII	CATG	5 cut(s)	421, 556, 650, 877, 982
NlaIV	GGNNCC	1 cut(s)	342
NmuCI	GTSAC	2 cut(s)	769, 813
PasI	CCCWGGG	1 cut(s)	597
PdmI	GAANNNNTTC	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	8 cut(s)	512, 568, 613, 616, 856, 859, 862, 907
PleI	GAGTC	1 cut(s)	800
PpsI	GAGTC	1 cut(s)	800
Ppu21I	YACGTR	1 cut(s)	580
Psp124BI	GAGCTC	1 cut(s)	294
Psp1406I	AACGTT	2 cut(s)	63, 183
Psp6I	CCWGG	2 cut(s)	378, 596
PspFI	CCCAGC	1 cut(s)	934
PspGI	CCWGG	2 cut(s)	378, 596
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	2 cut(s)	594, 949
PstI	CTGCAG	1 cut(s)	865
PsuI	RGATCY	2 cut(s)	781, 865
PvuII	CAGCTG	2 cut(s)	283, 860
RsaI	GTAC	2 cut(s)	641, 881
RsaNI	GTAC	2 cut(s)	640, 880
RseI	CAYNNNNRTG	1 cut(s)	456
SacI	GAGCTC	1 cut(s)	294
SalI	GTCGAC	1 cut(s)	995
SaqAI	TTAA	2 cut(s)	677, 834
SatI	GCNGC	8 cut(s)	511, 567, 612, 615, 855, 858, 861, 906
Sau3AI	GATC	7 cut(s)	47, 223, 309, 584, 699, 781, 865
Sau96I	GGNCC	2 cut(s)	594, 949
ScaI	AGTACT	1 cut(s)	641
SchI	GAGTC	1 cut(s)	800
ScrFI	CCNGG	2 cut(s)	380, 598
SduI	GDGCHC	3 cut(s)	133, 151, 294
SexAI	ACCWGGT	1 cut(s)	378
SfaNI	GCATC	1 cut(s)	673
SfcI	CTRYAG	2 cut(s)	438, 861
SinI	GGWCC	1 cut(s)	949
SmiMI	CAYNNNNRTG	1 cut(s)	456
Sse9I	AATT	1 cut(s)	443
SsiI	CCGC	3 cut(s)	83, 497, 854
SspMI	CTAG	1 cut(s)	785
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	2 cut(s)	378, 596
StyI	CCWWGG	2 cut(s)	417, 978
TaaI	ACNGT	1 cut(s)	813
TaiI	ACGT	4 cut(s)	66, 108, 186, 582
TaqI	TCGA	2 cut(s)	201, 996
TasI	AATT	1 cut(s)	443
TatI	WGTACW	2 cut(s)	639, 879
TauI	GCSGC	1 cut(s)	857
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	677, 834
Tru9I	TTAA	2 cut(s)	677, 834
TscAI	CASTG	2 cut(s)	494, 831
TseFI	GTSAC	2 cut(s)	769, 813
TseI	GCWGC	7 cut(s)	510, 566, 611, 614, 857, 860, 905
Tsp45I	GTSAC	2 cut(s)	769, 813
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	3 cut(s)	35, 41, 832
TspRI	CASTG	2 cut(s)	494, 831
VpaK11BI	GGWCC	1 cut(s)	949
XapI	RAATTY	1 cut(s)	443
XbaI	TCTAGA	1 cut(s)	784
XcmI	CCANNNNNNNNNTGG	1 cut(s)	959
XmiI	GTMKAC	2 cut(s)	996, 1008
XmnI	GAANNNNTTC	1 cut(s)	460
XspI	CTAG	1 cut(s)	785
ZrmI	AGTACT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.