Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010404

Physical Location & Seq

Genomic Coordinates Forward (+)

5327344 .. 5330010

Gene Structure 2667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTATATTGAGGAGTTGAAAGGAGGGGGAGTTGGAAGTGGGGAAGAAGGGAATTTGTCCCCTGGAAATAGAGATTTTGACTGCAGGGGCATCACACCGTTGGATGCGAAGCGGGTTTTGATCGGTGCAGGAGCTCGTGCCCTGTTTTACCCGACTCTGCTTTACAATGTCATTAGGAATAAGCTGCAGGCTGAGTTTCGGTGGTGGGATAAGGTTGATGAGTTTGTATTGTTAGGTGCAGTTCCATTCCCTACTGACGTGCCTCGCTTAAGGGAGGTTGGAGTCGGTGGAGTCATCACACTTAATGAGCCATACGAGACTTTGGTTCCAACATCTCTTTACCATTCTCACGGCATTAACCATCTGGTGATTCCTACAAGAGATTACTGCTTTGCACCATCACTCAGCGACGCATGTCGTGCTGTAGACTTCATTCATGAGAATGCATTAAGTGGACGGACAACTTATGTTCACTGTAAAGCTGGACGGGGGCGTAGCACAACCATTGTTATCTGTTACCTGGTCCATCACAAACAGATGACACCTGAATCTGCTTATGAATATCTAAAGTTGATTCGGCCAAGGGTGCTTTTAGCCTCTGCTCAGTGGCAGGCTGTCCAGGAGTACTACTATTTAATGGTGAAGAAAGCTTTTGTTTACAGCCGCATGCCAGATCTGATGGTGAAACCGCTTCAGTCTGCTTCTTCGCACAATCTAGTTGCATTTGATGAAGGCTCTATGGTAGTAGTAACAGAATCAGATCTTGAAGGATATGATGCGAATTTCCAGTCTGGCGCTGTGGGAAGTGAGATTTGGGCAGACTTGAGTGTGGTTTATCGGGTGCGAGTAGCTGGTCAGGCAGCTCTTGCAAGAATCTCATGTATGTGGCTCCGCTGCGGTGCCCACCAGAAGATCTCAGGAGAGAATATGGGCAGGGACAGCAGCTGCTCGATGAGGGCTGATCGTCTGGGCGGCATTAGTGTGGATATACAAGTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

334

Amino Acids

37.0

Weight (kDa)

6.75

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	85 - 185	1.5e-11	Swiss Army Knife protein, DSP-PTPase phosphatase domain
Tc-R-P	PF22785	88 - 178	4.9e-12	Polymorphic toxin system, DSP-PTPase phosphatase
DSPc	PF00782	112 - 210	5.1e-16	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35680
fragaria_vesca	FvH4_5g19640
malus_domestica	MD04G1061500.v1.1 MD06G1055300.v1.1
prunus_persica	Prupe.5G063900_v2.0.a1
pyrus_communis	pycom04g05520 pycom06g04630
rosa_chinensis	RchiOBHm_Chr7g0204371
rosa_laevigata	RLG00000003469
rosa_multiflora	Rmu_co8379943.1_g000001 Rmu_co8450077.1_g000001 Rmu_sc0002918.1_g000007 Rmu_sc0012666.1_g000001 Rmu_sc0014168.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253190
rosa_rugosa	Rorug07G0082600
rosa_samantha	Rh7AG212900 Rh7BG211000 Rh7CG226000 Rh7DG220200
rosa_wichuraiana	Rw7G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	899
AccI	GTMKAC	2 cut(s)	426, 996
AciI	CCGC	6 cut(s)	112, 664, 689, 892, 897, 972
AcoI	YGGCCR	1 cut(s)	578
AcsI	RAATTY	2 cut(s)	52, 781
AcuI	CTGAAG	1 cut(s)	677
AfaI	GTAC	1 cut(s)	626
AflII	CTTAAG	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	19, 767
AjiI	CACGTC	1 cut(s)	259
AjnI	CCWGG	3 cut(s)	61, 519, 618
AjuI	GAANNNNNNNTTGG	2 cut(s)	796, 828
AluBI	AGCT	7 cut(s)	134, 184, 482, 650, 851, 863, 945
AluI	AGCT	7 cut(s)	134, 184, 482, 650, 851, 863, 945
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	311
AlwNI	CAGNNNCTG	1 cut(s)	945
AoxI	GGCC	1 cut(s)	578
ApeKI	GCWGC	5 cut(s)	184, 860, 894, 942, 945
ApoI	RAATTY	2 cut(s)	52, 781
ArsI	GACNNNNNNTTYG	2 cut(s)	773, 805
AspLEI	GCGC	1 cut(s)	797
AspS9I	GGNCC	1 cut(s)	523
AsuHPI	GGTGA	3 cut(s)	379, 652, 694
AvaII	GGWCC	1 cut(s)	523
BaeGI	GKGCMC	2 cut(s)	142, 904
BanI	GGYRCC	1 cut(s)	899
BanII	GRGCYC	1 cut(s)	136
BauI	CACGAG	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	5 cut(s)	171, 872, 881, 932, 954
BccI	CCATC	4 cut(s)	369, 406, 534, 673
BceAI	ACGGC	1 cut(s)	367
BciT130I	CCWGG	3 cut(s)	63, 521, 620
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	716
BfmI	CTRYAG	3 cut(s)	82, 185, 423
BfoI	RGCGCY	1 cut(s)	798
BfrI	CTTAAG	1 cut(s)	268
BglII	AGATCT	3 cut(s)	673, 760, 912
BisI	GCNGC	7 cut(s)	185, 664, 861, 895, 943, 946, 973
BlsI	GCNGC	7 cut(s)	186, 665, 862, 896, 944, 947, 974
BmcAI	AGTACT	1 cut(s)	626
Bme1390I	CCNGG	3 cut(s)	63, 521, 620
Bme18I	GGWCC	1 cut(s)	523
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	3 cut(s)	327, 890, 901
BmrFI	CCNGG	3 cut(s)	63, 521, 620
BmsI	GCATC	3 cut(s)	94, 99, 766
BoxI	GACNNNNGTC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	844
BsaJI	CCNNGG	2 cut(s)	61, 581
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse1I	ACTGG	1 cut(s)	787
BseBI	CCWGG	3 cut(s)	63, 521, 620
BseDI	CCNNGG	2 cut(s)	61, 581
BseGI	GGATG	1 cut(s)	109
BseMII	CTCAG	4 cut(s)	183, 418, 617, 930
BseNI	ACTGG	1 cut(s)	787
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	2 cut(s)	142, 904
BseXI	GCAGC	5 cut(s)	171, 872, 881, 932, 954
BsgI	GTGCAG	2 cut(s)	147, 258
BshFI	GGCC	1 cut(s)	580
BshNI	GGYRCC	1 cut(s)	899
BsiHKAI	GWGCWC	1 cut(s)	136
BslFI	GGGAC	2 cut(s)	43, 950
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	2 cut(s)	43, 950
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	580
Bsp1286I	GDGCHC	3 cut(s)	136, 142, 904
Bsp143I	GATC	5 cut(s)	120, 673, 760, 912, 961
BspACI	CCGC	6 cut(s)	112, 664, 689, 892, 897, 972
BspANI	GGCC	1 cut(s)	580
BspCNI	CTCAG	4 cut(s)	184, 417, 616, 929
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	3 cut(s)	327, 890, 901
BspMAI	CTGCAG	2 cut(s)	86, 189
BspT107I	GGYRCC	1 cut(s)	899
BspTI	CTTAAG	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	787
BssECI	CCNNGG	2 cut(s)	61, 581
BssMI	GATC	5 cut(s)	120, 673, 760, 912, 961
BssSI	CACGAG	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	581
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	3 cut(s)	63, 521, 620
Bst4CI	ACNGT	2 cut(s)	99, 476
BstAFI	CTTAAG	1 cut(s)	268
BstAPI	GCANNNNNTGC	2 cut(s)	419, 866
BstC8I	GCNNGC	3 cut(s)	189, 612, 668
BstDEI	CTNAG	4 cut(s)	192, 404, 603, 916
BstF5I	GGATG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	798
BstHHI	GCGC	1 cut(s)	797
BstKTI	GATC	5 cut(s)	123, 676, 763, 915, 964
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	5 cut(s)	120, 673, 760, 912, 961
BstMWI	GCNNNNNNNGC	5 cut(s)	419, 586, 857, 866, 939
BstNI	CCWGG	3 cut(s)	63, 521, 620
BstNSI	RCATGY	2 cut(s)	417, 670
BstPAI	GACNNNNGTC	1 cut(s)	414
BstSCI	CCNGG	3 cut(s)	61, 519, 618
BstSFI	CTRYAG	3 cut(s)	82, 185, 423
BstSLI	GKGCMC	2 cut(s)	142, 904
BstV1I	GCAGC	5 cut(s)	171, 872, 881, 932, 954
BstX2I	RGATCY	3 cut(s)	673, 760, 912
BstYI	RGATCY	3 cut(s)	673, 760, 912
BsuRI	GGCC	1 cut(s)	580
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	472, 611
Cac8I	GCNNGC	3 cut(s)	189, 612, 668
CaiI	CAGNNNCTG	1 cut(s)	945
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	1 cut(s)	797
Cfr13I	GGNCC	1 cut(s)	523
CseI	GACGC	1 cut(s)	419
CsiI	ACCWGGT	1 cut(s)	519
Csp6I	GTAC	1 cut(s)	625
CviAII	CATG	4 cut(s)	414, 437, 667, 879
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	4 cut(s)	192, 404, 603, 916
DpnI	GATC	5 cut(s)	122, 675, 762, 914, 963
DpnII	GATC	5 cut(s)	120, 673, 760, 912, 961
EaeI	YGGCCR	1 cut(s)	578
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	523
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	677
EcoICRI	GAGCTC	1 cut(s)	134
EcoRII	CCWGG	3 cut(s)	61, 519, 618
EcoT14I	CCWWGG	1 cut(s)	581
EcoT22I	ATGCAT	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	581
FaeI	CATG	4 cut(s)	417, 440, 670, 882
FaqI	GGGAC	2 cut(s)	43, 950
FatI	CATG	4 cut(s)	413, 436, 666, 878
FauI	CCCGC	1 cut(s)	105
FblI	GTMKAC	2 cut(s)	426, 996
Fnu4HI	GCNGC	7 cut(s)	185, 664, 861, 895, 943, 946, 973
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	7 cut(s)	185, 664, 861, 895, 943, 946, 973
FspBI	CTAG	1 cut(s)	716
GlaI	GCGC	1 cut(s)	796
GluI	GCNGC	7 cut(s)	185, 664, 861, 895, 943, 946, 973
HaeII	RGCGCY	1 cut(s)	798
HaeIII	GGCC	1 cut(s)	580
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	1 cut(s)	797
Hin1II	CATG	4 cut(s)	417, 440, 670, 882
Hin6I	GCGC	1 cut(s)	795
HinP1I	GCGC	1 cut(s)	795
HindIII	AAGCTT	1 cut(s)	648
HinfI	GANTC	8 cut(s)	154, 282, 291, 370, 548, 574, 755, 873
HphI	GGTGA	3 cut(s)	379, 652, 694
Hpy166II	GTNNAC	5 cut(s)	427, 455, 472, 658, 997
Hpy188I	TCNGA	2 cut(s)	678, 760
Hpy188III	TCNNGA	3 cut(s)	437, 764, 918
Hpy8I	GTNNAC	5 cut(s)	427, 455, 472, 658, 997
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	3 cut(s)	41, 725, 761
HpyCH4III	ACNGT	2 cut(s)	99, 476
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	8 cut(s)	84, 128, 187, 239, 395, 446, 722, 869
HpyF10VI	GCNNNNNNNGC	5 cut(s)	419, 586, 857, 866, 939
HpyF3I	CTNAG	4 cut(s)	192, 404, 603, 916
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	4 cut(s)	417, 440, 670, 882
HspAI	GCGC	1 cut(s)	795
Kzo9I	GATC	5 cut(s)	120, 673, 760, 912, 961
LmnI	GCTCC	2 cut(s)	131, 894
Lsp1109I	GCAGC	5 cut(s)	171, 872, 881, 932, 954
LweI	GCATC	3 cut(s)	94, 99, 766
MabI	ACCWGGT	1 cut(s)	519
MaeI	CTAG	1 cut(s)	716
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	515, 748
MalI	GATC	5 cut(s)	122, 675, 762, 914, 963
MboI	GATC	5 cut(s)	120, 673, 760, 912, 961
MboII	GAAGA	4 cut(s)	56, 655, 696, 922
MflI	RGATCY	3 cut(s)	673, 760, 912
MhlI	GDGCHC	3 cut(s)	136, 142, 904
MluCI	AATT	2 cut(s)	52, 781
MlyI	GAGTC	3 cut(s)	148, 291, 300
MmeI	TCCRAC	4 cut(s)	13, 81, 259, 353
MnlI	CCTC	6 cut(s)	4, 17, 268, 273, 607, 948
Mph1103I	ATGCAT	1 cut(s)	448
MseI	TTAA	5 cut(s)	269, 303, 357, 449, 635
MslI	CAYNNNNRTG	3 cut(s)	441, 883, 980
MspA1I	CMGCKG	2 cut(s)	894, 945
MspCI	CTTAAG	1 cut(s)	268
MspR9I	CCNGG	3 cut(s)	63, 521, 620
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	3 cut(s)	63, 521, 620
MwoI	GCNNNNNNNGC	5 cut(s)	419, 586, 857, 866, 939
NdeII	GATC	5 cut(s)	120, 673, 760, 912, 961
NlaIII	CATG	4 cut(s)	417, 440, 670, 882
NlaIV	GGNNCC	3 cut(s)	327, 890, 901
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	2 cut(s)	417, 670
PaeI	GCATGC	1 cut(s)	670
PagI	TCATGA	1 cut(s)	436
PctI	GAATGC	1 cut(s)	448
PfeI	GAWTC	5 cut(s)	370, 548, 574, 755, 873
PfoI	TCCNGGA	1 cut(s)	618
PkrI	GCNGC	7 cut(s)	186, 665, 862, 896, 944, 947, 974
PleI	GAGTC	3 cut(s)	148, 290, 299
PpsI	GAGTC	3 cut(s)	148, 290, 299
PshAI	GACNNNNGTC	1 cut(s)	414
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	3 cut(s)	61, 519, 618
PspGI	CCWGG	3 cut(s)	61, 519, 618
PspN4I	GGNNCC	3 cut(s)	327, 890, 901
PspPI	GGNCC	1 cut(s)	523
PstI	CTGCAG	2 cut(s)	86, 189
PstNI	CAGNNNCTG	1 cut(s)	945
PsuI	RGATCY	3 cut(s)	673, 760, 912
PvuII	CAGCTG	1 cut(s)	945
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
RseI	CAYNNNNRTG	3 cut(s)	441, 883, 980
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	5 cut(s)	269, 303, 357, 449, 635
SatI	GCNGC	7 cut(s)	185, 664, 861, 895, 943, 946, 973
Sau3AI	GATC	5 cut(s)	120, 673, 760, 912, 961
Sau96I	GGNCC	1 cut(s)	523
ScaI	AGTACT	1 cut(s)	626
SchI	GAGTC	3 cut(s)	148, 291, 300
ScrFI	CCNGG	3 cut(s)	63, 521, 620
SduI	GDGCHC	3 cut(s)	136, 142, 904
SexAI	ACCWGGT	1 cut(s)	519
SfaNI	GCATC	3 cut(s)	94, 99, 766
SfcI	CTRYAG	3 cut(s)	82, 185, 423
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	3 cut(s)	441, 883, 980
SmlI	CTYRAG	2 cut(s)	268, 823
SmoI	CTYRAG	2 cut(s)	268, 823
SphI	GCATGC	1 cut(s)	670
Sse9I	AATT	2 cut(s)	52, 781
SsiI	CCGC	6 cut(s)	112, 664, 689, 892, 897, 972
SspMI	CTAG	1 cut(s)	716
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	3 cut(s)	61, 519, 618
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	2 cut(s)	99, 476
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	950
TasI	AATT	2 cut(s)	52, 781
TatI	WGTACW	1 cut(s)	624
TauI	GCSGC	2 cut(s)	666, 975
TfiI	GAWTC	5 cut(s)	370, 548, 574, 755, 873
Tru1I	TTAA	5 cut(s)	269, 303, 357, 449, 635
Tru9I	TTAA	5 cut(s)	269, 303, 357, 449, 635
TscAI	CASTG	2 cut(s)	479, 611
TseI	GCWGC	5 cut(s)	184, 860, 894, 942, 945
TspDTI	ATGAA	4 cut(s)	421, 425, 573, 744
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	2 cut(s)	479, 611
Vha464I	CTTAAG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	523
XapI	RAATTY	2 cut(s)	52, 781
XceI	RCATGY	2 cut(s)	417, 670
XmiI	GTMKAC	2 cut(s)	426, 996
XspI	CTAG	1 cut(s)	716
ZrmI	AGTACT	1 cut(s)	626
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.