Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010404

Physical Location & Seq

Genomic Coordinates Forward (+)

22048716 .. 22051990

Gene Structure 3275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18292

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTATATTGAGGAGTTGAAAGGTGGAGAAGAAGTGGATTTAGGGCATGGAAGGGGCATCGTGGGGTCGGATGCGAAACGGGTCTTGATCGGAGCGGGGGCTCGTGCGCTGTTTTACCCGACTCTGCTTTACAATGTCATCAGGAATAAGCTTCAGGCTGAGTTTCGCTGGTGGGATAAGGTCGATGAGTTTGTATTGTTAGGTGCAGTTCCATTCCCTACTGATGTGCCTCGCCTAAAGGAGGTCGGAGTTCGTGGAGTCATCACACTTAATGAGCCATACGAGACTTTGGTTCCAACGTCTCTTTATCAGTCCAATGGCATTAGCCATCTGGTGATCCCTACCAGAGACTACTGCTTTGCACCATCGCTGAATGATATATGTCGTGCTGTAAACTTCATTAATGAAAATGCATCAAGTGGGATGACAACATATGTTCACTGTAAAGCTGGACGGGGCCGTAGTACGACCATTGTTATCTGCTACTTGGTCCATCACAAGCAGATGACACCTGATTCTGCCTATGAATATCTGAAGTCAATTCGGCCACGTGTGCTTTTGGCCTCTGCTCAGTGGCAGGCTGTTCAGGAGTACTACTATTTCATGGTGAAGAAAGCTGTGGTTTACAGCCACTTGACTAATCTAATATTGAATCCCCCATGTTCAGCTCCCTCACATGATCTCCTTGCATTTGACGAGGGCTCTGTAGTAGTGGTCACTGAATCAGATCTTGAAGGATATGATGCAACTCTCCAGTCTGGTACTGTGGGAAATGAGATATGGGCCGACTTAAGTGTGGTCTATCGGGTTCGAGTAGCTGGTCAGGCAGCTCTCACAAGGATTTCATGCCTGTGGCTCCGTTGCCATGCCCACCAGGAGAGTTCAGCTAAGAAGTTGGGCAGGGAAAGCAGCTGCTCGATTACAGCTGATCATATGGGAGGCATTAGCGTGGACATACAAGTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

322

Amino Acids

35.75

Weight (kDa)

6.36

Isoelectric Point (pI)

34.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	74 - 174	6.1e-14	Swiss Army Knife protein, DSP-PTPase phosphatase domain
Tc-R-P	PF22785	77 - 167	1e-13	Polymorphic toxin system, DSP-PTPase phosphatase
DSPc	PF00782	97 - 199	5.2e-18	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35680
fragaria_vesca	FvH4_5g19640
malus_domestica	MD04G1061500.v1.1 MD06G1055300.v1.1
prunus_persica	Prupe.5G063900_v2.0.a1
pyrus_communis	pycom04g05520 pycom06g04630
rosa_chinensis	RchiOBHm_Chr7g0204371
rosa_laevigata	RLG00000003469
rosa_multiflora	Rmu_co8379943.1_g000001 Rmu_co8450077.1_g000001 Rmu_sc0002918.1_g000007 Rmu_sc0012666.1_g000001 Rmu_sc0014168.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253190
rosa_rugosa	Rorug07G0082600
rosa_samantha	Rh7AG212900 Rh7BG211000 Rh7CG226000 Rh7DG220200
rosa_wichuraiana	Rw7G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	95
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	1 cut(s)	331
AcoI	YGGCCR	1 cut(s)	545
AcuI	CTGAAG	2 cut(s)	137, 554
AcvI	CACGTG	1 cut(s)	551
AfaI	GTAC	3 cut(s)	466, 593, 763
AfiI	CCNNNNNNNGG	1 cut(s)	241
AflII	CTTAAG	1 cut(s)	790
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	3 cut(s)	19, 652, 734
AjnI	CCWGG	1 cut(s)	873
AluBI	AGCT	9 cut(s)	151, 449, 617, 668, 818, 830, 887, 912, 926
AluI	AGCT	9 cut(s)	151, 449, 617, 668, 818, 830, 887, 912, 926
Alw26I	GTCTC	3 cut(s)	278, 306, 342
AlwI	GGATC	1 cut(s)	331
AoxI	GGCC	4 cut(s)	457, 545, 561, 783
ApeKI	GCWGC	3 cut(s)	827, 909, 912
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AseI	ATTAAT	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	3 cut(s)	457, 490, 783
AsuHPI	GGTGA	2 cut(s)	346, 619
AvaII	GGWCC	1 cut(s)	490
BanII	GRGCYC	2 cut(s)	103, 704
BauI	CACGAG	1 cut(s)	102
BbrPI	CACGTG	1 cut(s)	551
BbvI	GCAGC	3 cut(s)	839, 899, 921
BccI	CCATC	3 cut(s)	336, 373, 501
BceAI	ACGGC	1 cut(s)	444
BciT130I	CCWGG	1 cut(s)	875
BclI	TGATCA	1 cut(s)	928
BcoDI	GTCTC	3 cut(s)	278, 306, 342
BfmI	CTRYAG	1 cut(s)	705
BfrI	CTTAAG	1 cut(s)	790
BglII	AGATCT	1 cut(s)	727
BisI	GCNGC	3 cut(s)	828, 910, 913
BlsI	GCNGC	3 cut(s)	829, 911, 914
BmcAI	AGTACT	1 cut(s)	593
Bme1390I	CCNGG	1 cut(s)	875
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	3 cut(s)	457, 490, 783
BmiI	GGNNCC	3 cut(s)	294, 458, 857
BmrFI	CCNGG	1 cut(s)	875
BmsI	GCATC	4 cut(s)	61, 66, 422, 733
BpmI	CTGGAG	1 cut(s)	737
BsaAI	YACGTR	1 cut(s)	551
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 48, 666, 696
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	754
BseBI	CCWGG	1 cut(s)	875
BseGI	GGATG	2 cut(s)	76, 429
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	2 cut(s)	150, 584
BseNI	ACTGG	1 cut(s)	754
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	3 cut(s)	839, 899, 921
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	4 cut(s)	459, 547, 563, 785
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	3 cut(s)	278, 306, 342
BsmBI	CGTCTC	1 cut(s)	306
BsnI	GGCC	4 cut(s)	459, 547, 563, 785
Bsp1286I	GDGCHC	2 cut(s)	103, 704
Bsp143I	GATC	5 cut(s)	87, 336, 679, 727, 928
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	4 cut(s)	459, 547, 563, 785
BspCNI	CTCAG	2 cut(s)	151, 583
BspLI	GGNNCC	3 cut(s)	294, 458, 857
BspPI	GGATC	1 cut(s)	331
BspTI	CTTAAG	1 cut(s)	790
BsrBI	CCGCTC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	754
BssMI	GATC	5 cut(s)	87, 336, 679, 727, 928
BssSI	CACGAG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	875
Bst4CI	ACNGT	2 cut(s)	443, 766
BstAFI	CTTAAG	1 cut(s)	790
BstBAI	YACGTR	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	579
BstDEI	CTNAG	3 cut(s)	159, 570, 888
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	76, 429
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	5 cut(s)	90, 339, 682, 730, 931
BstMAI	GTCTC	3 cut(s)	278, 306, 342
BstMBI	GATC	5 cut(s)	87, 336, 679, 727, 928
BstMWI	GCNNNNNNNGC	3 cut(s)	553, 824, 906
BstNI	CCWGG	1 cut(s)	875
BstSCI	CCNGG	1 cut(s)	873
BstSFI	CTRYAG	1 cut(s)	705
BstV1I	GCAGC	3 cut(s)	839, 899, 921
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
BsuRI	GGCC	4 cut(s)	459, 547, 563, 785
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	76, 429
BtsIMutI	CAGTG	3 cut(s)	439, 578, 717
Cac8I	GCNNGC	1 cut(s)	579
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	3 cut(s)	457, 490, 783
Csp6I	GTAC	3 cut(s)	465, 592, 762
CviAII	CATG	6 cut(s)	47, 604, 660, 677, 846, 866
CviQI	GTAC	3 cut(s)	465, 592, 762
DdeI	CTNAG	3 cut(s)	159, 570, 888
DpnI	GATC	5 cut(s)	89, 338, 681, 729, 930
DpnII	GATC	5 cut(s)	87, 336, 679, 727, 928
EaeI	YGGCCR	1 cut(s)	545
Eco24I	GRGCYC	2 cut(s)	103, 704
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	2 cut(s)	137, 554
Eco72I	CACGTG	1 cut(s)	551
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	873
EcoT22I	ATGCAT	1 cut(s)	415
EcoT38I	GRGCYC	2 cut(s)	103, 704
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	6 cut(s)	50, 607, 663, 680, 849, 869
FatI	CATG	6 cut(s)	46, 603, 659, 676, 845, 865
FauI	CCCGC	1 cut(s)	88
FauNDI	CATATG	2 cut(s)	433, 933
FbaI	TGATCA	1 cut(s)	928
Fnu4HI	GCNGC	3 cut(s)	828, 910, 913
FokI	GGATG	2 cut(s)	83, 436
FriOI	GRGCYC	2 cut(s)	103, 704
Fsp4HI	GCNGC	3 cut(s)	828, 910, 913
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	3 cut(s)	828, 910, 913
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	4 cut(s)	459, 547, 563, 785
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	6 cut(s)	50, 607, 663, 680, 849, 869
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	5 cut(s)	121, 258, 515, 652, 722
HphI	GGTGA	2 cut(s)	346, 619
Hpy166II	GTNNAC	5 cut(s)	394, 439, 625, 952, 964
Hpy188I	TCNGA	5 cut(s)	70, 92, 248, 534, 727
Hpy188III	TCNNGA	4 cut(s)	85, 142, 587, 731
Hpy8I	GTNNAC	5 cut(s)	394, 439, 625, 952, 964
HpyAV	CCTTC	2 cut(s)	45, 728
HpyCH4III	ACNGT	2 cut(s)	443, 766
HpyCH4IV	ACGT	2 cut(s)	299, 550
HpyCH4V	TGCA	5 cut(s)	206, 362, 413, 689, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	553, 824, 906
HpyF3I	CTNAG	3 cut(s)	159, 570, 888
HpySE526I	ACGT	2 cut(s)	299, 550
Hsp92II	CATG	6 cut(s)	50, 607, 663, 680, 849, 869
HspAI	GCGC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	928
Kzo9I	GATC	5 cut(s)	87, 336, 679, 727, 928
LmnI	GCTCC	3 cut(s)	92, 673, 861
Lsp1109I	GCAGC	3 cut(s)	839, 899, 921
LweI	GCATC	4 cut(s)	61, 66, 422, 733
MaeII	ACGT	2 cut(s)	299, 550
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	5 cut(s)	89, 338, 681, 729, 930
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	5 cut(s)	87, 336, 679, 727, 928
MboII	GAAGA	2 cut(s)	41, 622
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	2 cut(s)	103, 704
MluCI	AATT	1 cut(s)	540
MlyI	GAGTC	2 cut(s)	115, 267
MmeI	TCCRAC	3 cut(s)	48, 226, 320
MnlI	CCTC	7 cut(s)	4, 235, 240, 574, 682, 691, 932
Mph1103I	ATGCAT	1 cut(s)	415
MseI	TTAA	3 cut(s)	270, 402, 791
MslI	CAYNNNNRTG	2 cut(s)	850, 947
MspA1I	CMGCKG	2 cut(s)	912, 926
MspCI	CTTAAG	1 cut(s)	790
MspR9I	CCNGG	1 cut(s)	875
MvaI	CCWGG	1 cut(s)	875
MwoI	GCNNNNNNNGC	3 cut(s)	553, 824, 906
NdeI	CATATG	2 cut(s)	433, 933
NdeII	GATC	5 cut(s)	87, 336, 679, 727, 928
NlaIII	CATG	6 cut(s)	50, 607, 663, 680, 849, 869
NlaIV	GGNNCC	3 cut(s)	294, 458, 857
NmuCI	GTSAC	1 cut(s)	715
NsiI	ATGCAT	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	515, 652, 722
PkrI	GCNGC	3 cut(s)	829, 911, 914
PleI	GAGTC	2 cut(s)	115, 266
PmaCI	CACGTG	1 cut(s)	551
PmlI	CACGTG	1 cut(s)	551
PpsI	GAGTC	2 cut(s)	115, 266
Ppu21I	YACGTR	1 cut(s)	551
PshBI	ATTAAT	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	873
PspCI	CACGTG	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	873
PspN4I	GGNNCC	3 cut(s)	294, 458, 857
PspPI	GGNCC	3 cut(s)	457, 490, 783
PsuI	RGATCY	1 cut(s)	727
PvuII	CAGCTG	2 cut(s)	912, 926
RsaI	GTAC	3 cut(s)	466, 593, 763
RsaNI	GTAC	3 cut(s)	465, 592, 762
RseI	CAYNNNNRTG	2 cut(s)	850, 947
SaqAI	TTAA	3 cut(s)	270, 402, 791
SatI	GCNGC	3 cut(s)	828, 910, 913
Sau3AI	GATC	5 cut(s)	87, 336, 679, 727, 928
Sau96I	GGNCC	3 cut(s)	457, 490, 783
ScaI	AGTACT	1 cut(s)	593
SchI	GAGTC	2 cut(s)	115, 267
ScrFI	CCNGG	1 cut(s)	875
SduI	GDGCHC	2 cut(s)	103, 704
SfaNI	GCATC	4 cut(s)	61, 66, 422, 733
SfcI	CTRYAG	1 cut(s)	705
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	2 cut(s)	850, 947
SmlI	CTYRAG	1 cut(s)	790
SmoI	CTYRAG	1 cut(s)	790
Sse9I	AATT	1 cut(s)	540
SsiI	CCGC	1 cut(s)	95
SspI	AATATT	1 cut(s)	648
StyD4I	CCNGG	1 cut(s)	873
TaaI	ACNGT	2 cut(s)	443, 766
TaiI	ACGT	2 cut(s)	302, 553
TaqI	TCGA	3 cut(s)	183, 811, 917
TasI	AATT	1 cut(s)	540
TatI	WGTACW	1 cut(s)	591
TfiI	GAWTC	3 cut(s)	515, 652, 722
Tru1I	TTAA	3 cut(s)	270, 402, 791
Tru9I	TTAA	3 cut(s)	270, 402, 791
TscAI	CASTG	3 cut(s)	446, 578, 724
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	3 cut(s)	827, 909, 912
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	5 cut(s)	388, 420, 540, 592, 834
TspGWI	ACGGA	1 cut(s)	848
TspRI	CASTG	3 cut(s)	446, 578, 724
Vha464I	CTTAAG	1 cut(s)	790
VpaK11BI	GGWCC	1 cut(s)	490
VspI	ATTAAT	1 cut(s)	402
XagI	CCTNNNNNAGG	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	593
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.