Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010404

Physical Location & Seq

Genomic Coordinates Reverse (-)

7774673 .. 7778734

Gene Structure 4062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G063900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTATATTGAGGAATTGAAAGTAGGGGAAGTTGGAGGTGTGGAAGAAGGGAATTCATGCCCTGGAAATAACGATTTTGCTAGCAGAAGCATCGTTGGTTCGGATGCCAAACGGGTTTTGATCGGCGCTGGGGCTCGTGCGCTGTTTTACCCGACTCTGCTTTACAATGTCATCAGGAATAAGCTTCAGGCTGAGTTTCGGTGGTGGGACAAGGTCGATGAGTTTGTATTGTTAGGTGCAGTTCCATTCCCTACCGATGTGCCCCGCTTAAAGGAAGTTGGAGTTTGTGGAGTCATCACACTTAATGAGCCATATGAGACTTTGGTTCCAACGTCTCTTTATCATTATCATGGAATTAACCATCTGGTGATTCCTACAAGAGATTACTGCTTTGCACCATCACTGAGTGATACATGTCGTGCTGTAGACTTCATTCATGAAAATGCATCTTGTGGACAGACAACATATGTTCACTGTAAAGCTGGACGAGGGCGTAGTACGACCATTGTTATCTGTTACCTGGTCCATCACAAGCAGATGACACCTGATTCTGCCTATGAATATCTGAAGTCAATTCGTCCAAGGGTGCTTTTAGCCCCTTCTCAGTGGCAGGCTGTACAGGAATACTACTATATAATGGTGAAGAAAGCTGTTGTTTACAGCCACATGACCAATCTAATGATTCGATCCTTGCAGTCTGTTTCCTCACAGGATCTAGTTCCATTCGACGAAGGTTCTGTAGTAGTGATAACTGAATCAGATCTTGAAGGATATGATGCAAATCACCAATCAGGTGCTGTGGGAAGTGAGATATGGGCAGACTTAAGTGTTGTCTATCGGGTTCGAGTAGCCGGTCAGGCAGCTCTGGAAAGAATCTCATGTCTCTGGCTCCGCTGCCGTGCCCACCAGAAGATGTCAGGAGAGAACTTCAGCAGGGAAAGCAGCTGCTCGATGAGGGCTGATCATATGGGAAGCATTAATGTGGACATACAAGTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

334

Amino Acids

37.31

Weight (kDa)

6.13

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35680
fragaria_vesca	FvH4_5g19640
malus_domestica	MD04G1061500.v1.1 MD06G1055300.v1.1
prunus_persica	Prupe.5G063900_v2.0.a1
pyrus_communis	pycom04g05520 pycom06g04630
rosa_chinensis	RchiOBHm_Chr7g0204371
rosa_laevigata	RLG00000003469
rosa_multiflora	Rmu_co8379943.1_g000001 Rmu_co8450077.1_g000001 Rmu_sc0002918.1_g000007 Rmu_sc0012666.1_g000001 Rmu_sc0014168.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253190
rosa_rugosa	Rorug07G0082600
rosa_samantha	Rh7AG212900 Rh7BG211000 Rh7CG226000 Rh7DG220200
rosa_wichuraiana	Rw7G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	992
AccI	GTMKAC	2 cut(s)	426, 996
AciI	CCGC	2 cut(s)	265, 892
AclWI	GGATC	2 cut(s)	681, 720
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	3 cut(s)	170, 587, 913
AdeI	CACNNNGTG	1 cut(s)	407
AfaI	GTAC	2 cut(s)	499, 618
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflII	CTTAAG	1 cut(s)	823
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	2 cut(s)	19, 767
AjnI	CCWGG	2 cut(s)	61, 519
AluBI	AGCT	5 cut(s)	184, 482, 650, 863, 945
AluI	AGCT	5 cut(s)	184, 482, 650, 863, 945
Alw26I	GTCTC	3 cut(s)	311, 339, 887
AlwI	GGATC	2 cut(s)	681, 720
AlwNI	CAGNNNCTG	1 cut(s)	797
ApeKI	GCWGC	4 cut(s)	860, 894, 942, 945
ApoI	RAATTY	1 cut(s)	52
AseI	ATTAAT	1 cut(s)	978
AspLEI	GCGC	2 cut(s)	128, 142
AspS9I	GGNCC	1 cut(s)	523
AsuHPI	GGTGA	3 cut(s)	379, 652, 776
AsuNHI	GCTAGC	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	523
BaeGI	GKGCMC	2 cut(s)	264, 904
BanII	GRGCYC	1 cut(s)	136
BauI	CACGAG	1 cut(s)	135
BbvI	GCAGC	4 cut(s)	872, 881, 932, 954
BccI	CCATC	3 cut(s)	369, 406, 534
BceAI	ACGGC	1 cut(s)	882
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciT130I	CCWGG	2 cut(s)	63, 521
BclI	TGATCA	1 cut(s)	961
BcoDI	GTCTC	3 cut(s)	311, 339, 887
BfaI	CTAG	2 cut(s)	81, 716
BfmI	CTRYAG	2 cut(s)	423, 738
BfoI	RGCGCY	1 cut(s)	129
BfrI	CTTAAG	1 cut(s)	823
BglI	GCCNNNNNGGC	1 cut(s)	857
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	4 cut(s)	861, 895, 943, 946
BlsI	GCNGC	4 cut(s)	862, 896, 944, 947
Bme1390I	CCNGG	2 cut(s)	63, 521
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	2 cut(s)	327, 890
BmrFI	CCNGG	2 cut(s)	63, 521
BmsI	GCATC	4 cut(s)	94, 99, 455, 766
BmtI	GCTAGC	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	780
BsaJI	CCNNGG	2 cut(s)	61, 581
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	851
Bse8I	GATNNNNATC	1 cut(s)	780
BseBI	CCWGG	2 cut(s)	63, 521
BseDI	CCNNGG	2 cut(s)	61, 581
BseGI	GGATG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	3 cut(s)	183, 395, 617
BseSI	GKGCMC	2 cut(s)	264, 904
BseXI	GCAGC	4 cut(s)	872, 881, 932, 954
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	852
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	3 cut(s)	311, 339, 887
BsmBI	CGTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	221
Bsp1286I	GDGCHC	3 cut(s)	136, 264, 904
Bsp1407I	TGTACA	1 cut(s)	616
Bsp143I	GATC	5 cut(s)	120, 686, 712, 760, 961
BspACI	CCGC	2 cut(s)	265, 892
BspCNI	CTCAG	3 cut(s)	184, 396, 616
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	327, 890
BspOI	GCTAGC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	681, 720
BspTI	CTTAAG	1 cut(s)	823
BsrFI	RCCGGY	1 cut(s)	851
BsrGI	TGTACA	1 cut(s)	616
BssAI	RCCGGY	1 cut(s)	851
BssECI	CCNNGG	2 cut(s)	61, 581
BssMI	GATC	5 cut(s)	120, 686, 712, 760, 961
BssSI	CACGAG	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	581
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	63, 521
Bst4CI	ACNGT	1 cut(s)	476
BstAFI	CTTAAG	1 cut(s)	823
BstAUI	TGTACA	1 cut(s)	616
BstC8I	GCNNGC	2 cut(s)	82, 612
BstDEI	CTNAG	3 cut(s)	192, 404, 603
BstF5I	GGATG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	128, 142
BstKTI	GATC	5 cut(s)	123, 689, 715, 763, 964
BstMAI	GTCTC	3 cut(s)	311, 339, 887
BstMBI	GATC	5 cut(s)	120, 686, 712, 760, 961
BstMWI	GCNNNNNNNGC	2 cut(s)	857, 939
BstNI	CCWGG	2 cut(s)	63, 521
BstNSI	RCATGY	1 cut(s)	417
BstSCI	CCNGG	2 cut(s)	61, 519
BstSFI	CTRYAG	2 cut(s)	423, 738
BstSLI	GKGCMC	2 cut(s)	264, 904
BstV1I	GCAGC	4 cut(s)	872, 881, 932, 954
BstX2I	RGATCY	2 cut(s)	712, 760
BstYI	RGATCY	2 cut(s)	712, 760
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	3 cut(s)	401, 472, 611
Cac8I	GCNNGC	2 cut(s)	82, 612
CaiI	CAGNNNCTG	1 cut(s)	797
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	2 cut(s)	128, 142
Cfr10I	RCCGGY	1 cut(s)	851
Cfr13I	GGNCC	1 cut(s)	523
CsiI	ACCWGGT	1 cut(s)	519
Csp6I	GTAC	2 cut(s)	498, 617
CviAII	CATG	6 cut(s)	57, 350, 414, 437, 667, 879
CviQI	GTAC	2 cut(s)	498, 617
DdeI	CTNAG	3 cut(s)	192, 404, 603
DpnI	GATC	5 cut(s)	122, 688, 714, 762, 963
DpnII	GATC	5 cut(s)	120, 686, 712, 760, 961
DraIII	CACNNNGTG	1 cut(s)	407
DrdI	GACNNNNNNGTC	1 cut(s)	992
DseDI	GACNNNNNNGTC	1 cut(s)	992
Eco130I	CCWWGG	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	523
Eco57I	CTGAAG	3 cut(s)	170, 587, 913
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	61, 519
EcoT14I	CCWWGG	1 cut(s)	581
EcoT22I	ATGCAT	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	581
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	6 cut(s)	60, 353, 417, 440, 670, 882
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	6 cut(s)	56, 349, 413, 436, 666, 878
FauI	CCCGC	1 cut(s)	272
FauNDI	CATATG	3 cut(s)	313, 466, 966
FbaI	TGATCA	1 cut(s)	961
FblI	GTMKAC	2 cut(s)	426, 996
Fnu4HI	GCNGC	4 cut(s)	861, 895, 943, 946
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	4 cut(s)	861, 895, 943, 946
FspBI	CTAG	2 cut(s)	81, 716
GlaI	GCGC	2 cut(s)	127, 141
GluI	GCNGC	4 cut(s)	861, 895, 943, 946
GsaI	CCCAGC	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	129
HapII	CCGG	1 cut(s)	852
HhaI	GCGC	2 cut(s)	128, 142
Hin1II	CATG	6 cut(s)	60, 353, 417, 440, 670, 882
Hin6I	GCGC	2 cut(s)	126, 140
HinP1I	GCGC	2 cut(s)	126, 140
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	7 cut(s)	154, 291, 370, 548, 682, 755, 873
HpaII	CCGG	1 cut(s)	852
HphI	GGTGA	3 cut(s)	379, 652, 776
Hpy166II	GTNNAC	6 cut(s)	427, 455, 472, 658, 985, 997
Hpy188I	TCNGA	3 cut(s)	103, 567, 760
Hpy188III	TCNNGA	5 cut(s)	175, 437, 764, 866, 918
Hpy8I	GTNNAC	6 cut(s)	427, 455, 472, 658, 985, 997
Hpy99I	CGWCG	1 cut(s)	731
HpyAV	CCTTC	4 cut(s)	41, 609, 725, 761
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	5 cut(s)	239, 395, 446, 694, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	857, 939
HpyF3I	CTNAG	3 cut(s)	192, 404, 603
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	6 cut(s)	60, 353, 417, 440, 670, 882
HspAI	GCGC	2 cut(s)	126, 140
Ksp22I	TGATCA	1 cut(s)	961
Kzo9I	GATC	5 cut(s)	120, 686, 712, 760, 961
LmnI	GCTCC	1 cut(s)	894
Lsp1109I	GCAGC	4 cut(s)	872, 881, 932, 954
LweI	GCATC	4 cut(s)	94, 99, 455, 766
MabI	ACCWGGT	1 cut(s)	519
MaeI	CTAG	2 cut(s)	81, 716
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	5 cut(s)	122, 688, 714, 762, 963
MboI	GATC	5 cut(s)	120, 686, 712, 760, 961
MboII	GAAGA	3 cut(s)	56, 655, 922
MflI	RGATCY	2 cut(s)	712, 760
MhlI	GDGCHC	3 cut(s)	136, 264, 904
MluCI	AATT	4 cut(s)	14, 52, 354, 573
MlyI	GAGTC	2 cut(s)	148, 300
MmeI	TCCRAC	3 cut(s)	13, 259, 353
MnlI	CCTC	5 cut(s)	4, 29, 482, 715, 948
Mph1103I	ATGCAT	1 cut(s)	448
MseI	TTAA	5 cut(s)	269, 303, 357, 824, 978
MslI	CAYNNNNRTG	3 cut(s)	348, 441, 980
MspA1I	CMGCKG	2 cut(s)	894, 945
MspCI	CTTAAG	1 cut(s)	823
MspI	CCGG	1 cut(s)	852
MspR9I	CCNGG	2 cut(s)	63, 521
MvaI	CCWGG	2 cut(s)	63, 521
MwoI	GCNNNNNNNGC	2 cut(s)	857, 939
NdeI	CATATG	3 cut(s)	313, 466, 966
NdeII	GATC	5 cut(s)	120, 686, 712, 760, 961
NheI	GCTAGC	1 cut(s)	80
NlaIII	CATG	6 cut(s)	60, 353, 417, 440, 670, 882
NlaIV	GGNNCC	2 cut(s)	327, 890
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	1 cut(s)	417
PagI	TCATGA	1 cut(s)	436
PciI	ACATGT	1 cut(s)	413
PfeI	GAWTC	5 cut(s)	370, 548, 682, 755, 873
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	4 cut(s)	862, 896, 944, 947
PleI	GAGTC	2 cut(s)	148, 299
PpsI	GAGTC	2 cut(s)	148, 299
PscI	ACATGT	1 cut(s)	413
PshBI	ATTAAT	1 cut(s)	978
Psp6I	CCWGG	2 cut(s)	61, 519
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	2 cut(s)	61, 519
PspN4I	GGNNCC	2 cut(s)	327, 890
PspPI	GGNCC	1 cut(s)	523
PstNI	CAGNNNCTG	1 cut(s)	797
PsuI	RGATCY	2 cut(s)	712, 760
PsyI	GACNNNGTC	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	945
RsaI	GTAC	2 cut(s)	499, 618
RsaNI	GTAC	2 cut(s)	498, 617
RseI	CAYNNNNRTG	3 cut(s)	348, 441, 980
SaqAI	TTAA	5 cut(s)	269, 303, 357, 824, 978
SatI	GCNGC	4 cut(s)	861, 895, 943, 946
Sau3AI	GATC	5 cut(s)	120, 686, 712, 760, 961
Sau96I	GGNCC	1 cut(s)	523
SchI	GAGTC	2 cut(s)	148, 300
ScrFI	CCNGG	2 cut(s)	63, 521
SduI	GDGCHC	3 cut(s)	136, 264, 904
SexAI	ACCWGGT	1 cut(s)	519
SfaNI	GCATC	4 cut(s)	94, 99, 455, 766
SfcI	CTRYAG	2 cut(s)	423, 738
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	3 cut(s)	348, 441, 980
SmlI	CTYRAG	1 cut(s)	823
SmoI	CTYRAG	1 cut(s)	823
Sse9I	AATT	4 cut(s)	14, 52, 354, 573
SsiI	CCGC	2 cut(s)	265, 892
SspMI	CTAG	2 cut(s)	81, 716
StyD4I	CCNGG	2 cut(s)	61, 519
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	5 cut(s)	216, 685, 726, 844, 950
TasI	AATT	4 cut(s)	14, 52, 354, 573
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	5 cut(s)	370, 548, 682, 755, 873
Tru1I	TTAA	5 cut(s)	269, 303, 357, 824, 978
Tru9I	TTAA	5 cut(s)	269, 303, 357, 824, 978
TscAI	CASTG	3 cut(s)	408, 479, 611
TseI	GCWGC	4 cut(s)	860, 894, 942, 945
TspDTI	ATGAA	5 cut(s)	45, 421, 425, 453, 573
TspRI	CASTG	3 cut(s)	408, 479, 611
Tth111I	GACNNNGTC	1 cut(s)	212
Vha464I	CTTAAG	1 cut(s)	823
VpaK11BI	GGWCC	1 cut(s)	523
VspI	ATTAAT	1 cut(s)	978
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	417
XmiI	GTMKAC	2 cut(s)	426, 996
XspI	CTAG	2 cut(s)	81, 716
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.