Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010404

Physical Location & Seq

Genomic Coordinates Forward (+)

11495886 .. 11498824

Gene Structure 2939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTATATTGAGGAATTGAAAGGAGGGGAAGGTGGAGGCGGAGGCGGAGAAGAAGTGGAGTTAGGGCGTGGGAGTGGTAGTGGGGGTGTTGTAGGATCGGATGCGAAACGGGTGTTGATCGGCGCAGGGGCTCGTGCGCTGTTTTACCCGACTCTGCTGTACAATGTCATTCGGAATAAGCTTCAGGCTGAGTTTCGCTGGTGGGATAAGGTCGATGAGTTTGTATTGTTAGGTGCAGTTCCATTCCCTACTGACGTGCCTCGCTTGAAGGAGGTCGGAGTTCGTGGAGTCATCACTCTTAATGAGCCATACGAGACTTTGGTTCCAACATCTCTTTATCAGTCCAATGGCATTAGCCATCTGGTGATCCCTACAAGAGACTACTGTTTTGCCCCATCACTGAATGATATCTGTCGTGCTGTAAACTTCATTAATGAAAATGCTTCAAATGGGACGACAACATATGTTCACTGTAAAGCTGGACGGGGCCGCAGTACAACCATTGTTATCTGCTACTTGGTCCATCACAAGCGGATGACCCCTGATTCTGCCTATGAATATCTTAAGTCGATTCGGCCACGTGTGCTTTTGGCCTCTGCTCAGTGGCAGGCTGTTCAGGAGTACTACTATTTCATGGTGAAGAAAGCTGTGGTTTACAGCAACTTGACAAATCTGATATTGGATCCCCTAAGTTCAGTTACCTCGCATGATCTGCTTGCATTCGATGAGAGCTCTGTAGTAGTGGTGACCGAATCAGATCTTGAAGGATATGATGCGACTCTTCAGTCTGGTGTTGTAGGAAATGAGATATGGGCCGACTTAAGTGTGGTCTATCGGGTTCGTGTAGCTGGTCAGGCAGCTCTCACAAGGATTTCATGCCTATGGCTCCGTTGCCATGCCCAAAAGCGGATTTCAGCAGAGAAGTTGGGCAGAGAAAGCAGCTGCTCGATTACAACTGATCATCTTGGAGGCATTAGTGTGGACATACAAGTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

333

Amino Acids

36.5

Weight (kDa)

6.19

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	84 - 184	3.9e-14	Swiss Army Knife protein, DSP-PTPase phosphatase domain
Tc-R-P	PF22785	87 - 176	5.6e-14	Polymorphic toxin system, DSP-PTPase phosphatase
DSPc	PF00782	107 - 209	3.9e-18	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35680
fragaria_vesca	FvH4_5g19640
malus_domestica	MD04G1061500.v1.1 MD06G1055300.v1.1
prunus_persica	Prupe.5G063900_v2.0.a1
pyrus_communis	pycom04g05520 pycom06g04630
rosa_chinensis	RchiOBHm_Chr7g0204371
rosa_laevigata	RLG00000003469
rosa_multiflora	Rmu_co8379943.1_g000001 Rmu_co8450077.1_g000001 Rmu_sc0002918.1_g000007 Rmu_sc0012666.1_g000001 Rmu_sc0014168.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253190
rosa_rugosa	Rorug07G0082600
rosa_samantha	Rh7AG212900 Rh7BG211000 Rh7CG226000 Rh7DG220200
rosa_wichuraiana	Rw7G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	784
AciI	CCGC	5 cut(s)	39, 45, 490, 532, 907
AclWI	GGATC	4 cut(s)	103, 361, 677, 690
AcoI	YGGCCR	1 cut(s)	575
AcuI	CTGAAG	2 cut(s)	167, 767
AcvI	CACGTG	1 cut(s)	581
AfaI	GTAC	3 cut(s)	161, 496, 623
AfiI	CCNNNNNNNGG	1 cut(s)	906
AflII	CTTAAG	2 cut(s)	563, 820
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	4 cut(s)	19, 268, 447, 764
AjiI	CACGTC	1 cut(s)	256
AluBI	AGCT	7 cut(s)	181, 479, 647, 732, 848, 860, 942
AluI	AGCT	7 cut(s)	181, 479, 647, 732, 848, 860, 942
Alw21I	GWGCWC	1 cut(s)	734
Alw26I	GTCTC	2 cut(s)	308, 372
AlwI	GGATC	4 cut(s)	103, 361, 677, 690
AoxI	GGCC	4 cut(s)	487, 575, 591, 813
ApeKI	GCWGC	3 cut(s)	857, 939, 942
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
AseI	ATTAAT	1 cut(s)	432
AspLEI	GCGC	2 cut(s)	125, 139
AspS9I	GGNCC	3 cut(s)	487, 520, 813
AsuHPI	GGTGA	3 cut(s)	376, 649, 757
AvaII	GGWCC	1 cut(s)	520
BamHI	GGATCC	1 cut(s)	682
BanII	GRGCYC	2 cut(s)	133, 734
BauI	CACGAG	1 cut(s)	132
BbrPI	CACGTG	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	734
BbvI	GCAGC	3 cut(s)	869, 929, 951
BccI	CCATC	3 cut(s)	366, 403, 531
BclI	TGATCA	1 cut(s)	958
BcoDI	GTCTC	2 cut(s)	308, 372
BfmI	CTRYAG	1 cut(s)	735
BfrI	CTTAAG	2 cut(s)	563, 820
BglII	AGATCT	1 cut(s)	757
BisI	GCNGC	4 cut(s)	490, 858, 940, 943
BlsI	GCNGC	4 cut(s)	491, 859, 941, 944
BmcAI	AGTACT	1 cut(s)	623
Bme18I	GGWCC	1 cut(s)	520
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	3 cut(s)	487, 520, 813
BmiI	GGNNCC	4 cut(s)	324, 488, 684, 887
BmsI	GCATC	2 cut(s)	91, 763
BsaAI	YACGTR	1 cut(s)	581
BsaXI	ACNNNNNCTCC	4 cut(s)	39, 64, 69, 94
Bsc4I	CCNNNNNNNGG	1 cut(s)	906
BseGI	GGATG	2 cut(s)	106, 540
BseLI	CCNNNNNNNGG	1 cut(s)	906
BseMII	CTCAG	2 cut(s)	180, 614
BseXI	GCAGC	3 cut(s)	869, 929, 951
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	4 cut(s)	489, 577, 593, 815
BsiHKAI	GWGCWC	1 cut(s)	734
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	1 cut(s)	906
BsmAI	GTCTC	2 cut(s)	308, 372
BsmFI	GGGAC	1 cut(s)	466
BsmI	GAATGC	1 cut(s)	719
BsnI	GGCC	4 cut(s)	489, 577, 593, 815
Bsp1286I	GDGCHC	2 cut(s)	133, 734
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	7 cut(s)	95, 117, 366, 682, 709, 757, 958
BspACI	CCGC	5 cut(s)	39, 45, 490, 532, 907
BspANI	GGCC	4 cut(s)	489, 577, 593, 815
BspCNI	CTCAG	2 cut(s)	181, 613
BspLI	GGNNCC	4 cut(s)	324, 488, 684, 887
BspPI	GGATC	4 cut(s)	103, 361, 677, 690
BspTI	CTTAAG	2 cut(s)	563, 820
BsrGI	TGTACA	1 cut(s)	159
BssMI	GATC	7 cut(s)	95, 117, 366, 682, 709, 757, 958
BssSI	CACGAG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	386, 473
Bst6I	CTCTTC	1 cut(s)	786
BstAFI	CTTAAG	2 cut(s)	563, 820
BstAPI	GCANNNNNTGC	1 cut(s)	712
BstAUI	TGTACA	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	581
BstC8I	GCNNGC	2 cut(s)	609, 717
BstDEI	CTNAG	3 cut(s)	189, 600, 689
BstEII	GGTNACC	1 cut(s)	745
BstF5I	GGATG	2 cut(s)	106, 540
BstHHI	GCGC	2 cut(s)	125, 139
BstKTI	GATC	7 cut(s)	98, 120, 369, 685, 712, 760, 961
BstMAI	GTCTC	2 cut(s)	308, 372
BstMBI	GATC	7 cut(s)	95, 117, 366, 682, 709, 757, 958
BstMWI	GCNNNNNNNGC	4 cut(s)	583, 712, 854, 936
BstPI	GGTNACC	1 cut(s)	745
BstSFI	CTRYAG	1 cut(s)	735
BstV1I	GCAGC	3 cut(s)	869, 929, 951
BstX2I	RGATCY	2 cut(s)	682, 757
BstYI	RGATCY	2 cut(s)	682, 757
BsuRI	GGCC	4 cut(s)	489, 577, 593, 815
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	106, 540
BtsIMutI	CAGTG	3 cut(s)	398, 469, 608
Cac8I	GCNNGC	2 cut(s)	609, 717
CfoI	GCGC	2 cut(s)	125, 139
Cfr13I	GGNCC	3 cut(s)	487, 520, 813
Csp6I	GTAC	3 cut(s)	160, 495, 622
CviAII	CATG	4 cut(s)	634, 707, 876, 896
CviQI	GTAC	3 cut(s)	160, 495, 622
DdeI	CTNAG	3 cut(s)	189, 600, 689
DpnI	GATC	7 cut(s)	97, 119, 368, 684, 711, 759, 960
DpnII	GATC	7 cut(s)	95, 117, 366, 682, 709, 757, 958
DrdI	GACNNNNNNGTC	1 cut(s)	784
DseDI	GACNNNNNNGTC	1 cut(s)	784
EaeI	YGGCCR	1 cut(s)	575
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
EciI	GGCGGA	2 cut(s)	54, 60
Ecl136II	GAGCTC	1 cut(s)	732
Eco24I	GRGCYC	2 cut(s)	133, 734
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	520
Eco53kI	GAGCTC	1 cut(s)	732
Eco57I	CTGAAG	2 cut(s)	167, 767
Eco72I	CACGTG	1 cut(s)	581
Eco91I	GGTNACC	1 cut(s)	745
EcoICRI	GAGCTC	1 cut(s)	732
EcoO65I	GGTNACC	1 cut(s)	745
EcoRV	GATATC	1 cut(s)	409
EcoT38I	GRGCYC	2 cut(s)	133, 734
FaeI	CATG	4 cut(s)	637, 710, 879, 899
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	4 cut(s)	633, 706, 875, 895
FauNDI	CATATG	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	958
Fnu4HI	GCNGC	4 cut(s)	490, 858, 940, 943
FokI	GGATG	2 cut(s)	113, 547
FriOI	GRGCYC	2 cut(s)	133, 734
Fsp4HI	GCNGC	4 cut(s)	490, 858, 940, 943
GlaI	GCGC	2 cut(s)	124, 138
GluI	GCNGC	4 cut(s)	490, 858, 940, 943
HaeIII	GGCC	4 cut(s)	489, 577, 593, 815
HhaI	GCGC	2 cut(s)	125, 139
Hin1II	CATG	4 cut(s)	637, 710, 879, 899
Hin6I	GCGC	2 cut(s)	123, 137
HinP1I	GCGC	2 cut(s)	123, 137
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	6 cut(s)	151, 288, 545, 571, 752, 778
HphI	GGTGA	3 cut(s)	376, 649, 757
Hpy166II	GTNNAC	5 cut(s)	424, 469, 655, 982, 994
Hpy188I	TCNGA	5 cut(s)	100, 174, 278, 675, 757
Hpy188III	TCNNGA	2 cut(s)	617, 761
Hpy8I	GTNNAC	5 cut(s)	424, 469, 655, 982, 994
HpyAV	CCTTC	3 cut(s)	23, 262, 758
HpyCH4III	ACNGT	2 cut(s)	386, 473
HpyCH4IV	ACGT	2 cut(s)	255, 580
HpyCH4V	TGCA	2 cut(s)	236, 719
HpyF10VI	GCNNNNNNNGC	4 cut(s)	583, 712, 854, 936
HpyF3I	CTNAG	3 cut(s)	189, 600, 689
HpySE526I	ACGT	2 cut(s)	255, 580
Hsp92II	CATG	4 cut(s)	637, 710, 879, 899
HspAI	GCGC	2 cut(s)	123, 137
Ksp22I	TGATCA	1 cut(s)	958
Kzo9I	GATC	7 cut(s)	95, 117, 366, 682, 709, 757, 958
LmnI	GCTCC	1 cut(s)	891
Lsp1109I	GCAGC	3 cut(s)	869, 929, 951
LweI	GCATC	2 cut(s)	91, 763
MaeII	ACGT	2 cut(s)	255, 580
MaeIII	GTNAC	2 cut(s)	697, 745
MalI	GATC	7 cut(s)	97, 119, 368, 684, 711, 759, 960
MboI	GATC	7 cut(s)	95, 117, 366, 682, 709, 757, 958
MboII	GAAGA	3 cut(s)	62, 652, 773
MflI	RGATCY	2 cut(s)	682, 757
MhlI	GDGCHC	2 cut(s)	133, 734
MluCI	AATT	1 cut(s)	14
MlyI	GAGTC	3 cut(s)	145, 297, 772
MmeI	TCCRAC	2 cut(s)	256, 350
MnlI	CCTC	9 cut(s)	4, 17, 29, 35, 265, 270, 604, 712, 962
MseI	TTAA	4 cut(s)	300, 432, 564, 821
MslI	CAYNNNNRTG	2 cut(s)	880, 977
MspA1I	CMGCKG	1 cut(s)	942
MspCI	CTTAAG	2 cut(s)	563, 820
Mva1269I	GAATGC	1 cut(s)	719
MwoI	GCNNNNNNNGC	4 cut(s)	583, 712, 854, 936
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	7 cut(s)	95, 117, 366, 682, 709, 757, 958
NlaIII	CATG	4 cut(s)	637, 710, 879, 899
NlaIV	GGNNCC	4 cut(s)	324, 488, 684, 887
NmuCI	GTSAC	1 cut(s)	745
PctI	GAATGC	1 cut(s)	719
PfeI	GAWTC	3 cut(s)	545, 571, 752
PkrI	GCNGC	4 cut(s)	491, 859, 941, 944
PleI	GAGTC	3 cut(s)	145, 296, 772
PmaCI	CACGTG	1 cut(s)	581
PmlI	CACGTG	1 cut(s)	581
PpsI	GAGTC	3 cut(s)	145, 296, 772
Ppu21I	YACGTR	1 cut(s)	581
PshBI	ATTAAT	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	734
PspCI	CACGTG	1 cut(s)	581
PspEI	GGTNACC	1 cut(s)	745
PspN4I	GGNNCC	4 cut(s)	324, 488, 684, 887
PspPI	GGNCC	3 cut(s)	487, 520, 813
PsuI	RGATCY	2 cut(s)	682, 757
PvuII	CAGCTG	1 cut(s)	942
RsaI	GTAC	3 cut(s)	161, 496, 623
RsaNI	GTAC	3 cut(s)	160, 495, 622
RseI	CAYNNNNRTG	2 cut(s)	880, 977
SacI	GAGCTC	1 cut(s)	734
SaqAI	TTAA	4 cut(s)	300, 432, 564, 821
SatI	GCNGC	4 cut(s)	490, 858, 940, 943
Sau3AI	GATC	7 cut(s)	95, 117, 366, 682, 709, 757, 958
Sau96I	GGNCC	3 cut(s)	487, 520, 813
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	3 cut(s)	145, 297, 772
SduI	GDGCHC	2 cut(s)	133, 734
SfaNI	GCATC	2 cut(s)	91, 763
SfcI	CTRYAG	1 cut(s)	735
SinI	GGWCC	1 cut(s)	520
SmiMI	CAYNNNNRTG	2 cut(s)	880, 977
SmlI	CTYRAG	2 cut(s)	563, 820
SmoI	CTYRAG	2 cut(s)	563, 820
Sse9I	AATT	1 cut(s)	14
SsiI	CCGC	5 cut(s)	39, 45, 490, 532, 907
SstI	GAGCTC	1 cut(s)	734
TaaI	ACNGT	2 cut(s)	386, 473
TaiI	ACGT	2 cut(s)	258, 583
TaqI	TCGA	4 cut(s)	213, 569, 723, 947
TaqII	GACCGA	1 cut(s)	764
TasI	AATT	1 cut(s)	14
TatI	WGTACW	3 cut(s)	159, 494, 621
TauI	GCSGC	1 cut(s)	492
TfiI	GAWTC	3 cut(s)	545, 571, 752
Tru1I	TTAA	4 cut(s)	300, 432, 564, 821
Tru9I	TTAA	4 cut(s)	300, 432, 564, 821
TscAI	CASTG	3 cut(s)	405, 476, 608
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	3 cut(s)	857, 939, 942
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	5 cut(s)	418, 450, 570, 622, 864
TspGWI	ACGGA	1 cut(s)	878
TspRI	CASTG	3 cut(s)	405, 476, 608
Vha464I	CTTAAG	2 cut(s)	563, 820
VpaK11BI	GGWCC	1 cut(s)	520
VspI	ATTAAT	1 cut(s)	432
ZrmI	AGTACT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.