Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010404

Physical Location & Seq

Genomic Coordinates Forward (+)

21399140 .. 21402376

Gene Structure 3237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG220200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGACAACATATGTTCACTGTAAAGCTGGACGGGGCCGTAGTACGACCATTGTTATCTGCTACTTGGTCCATCACAAGCAGATGACACCTGATTCTGCCTATGAATATCTGAAGTCAATTCGGCCACGTGTGCTTTTGGCCTCTGCTCAGTGGCAGGCTGTTCAGGAGTACTACTATTTCATGGTGAAGAAAGCTGTGGTTTACAGCCACTTGACTAATCTAATATTGAATCCCCCATGTTCAGCTCCCTCACATGATCTCCTTGCATTTGACGAGGGCTCTGTAGTAGTGGTCACTGAATCAGATCTTGAAGGATATGATGCAACTCTCCAGTCTGGTACTGTGGGAAATGAGATATGGGCCGACTTAAGTGTGGTCTATCGGGTTCGAGTAGCTGGTCAGGCAGCTCTCACAAGGATTTCATGCCTGTGGCTCCGTTGCCATGCCCACCAGGAGAGTTCAGCTAAGAAGTTGGGCAGGGAAAGCAGCTGCTCGATTACAGCTGATCATATGGGAGGCATTAGCGTGGACATACAAGTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

181

Amino Acids

20.12

Weight (kDa)

7.07

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	3 - 58	7.4e-13	Dual specificity phosphatase, catalytic domain
PTP-SAK	PF22784	3 - 33	3.8e-06	Swiss Army Knife protein, DSP-PTPase phosphatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35680
fragaria_vesca	FvH4_5g19640
malus_domestica	MD04G1061500.v1.1 MD06G1055300.v1.1
prunus_persica	Prupe.5G063900_v2.0.a1
pyrus_communis	pycom04g05520 pycom06g04630
rosa_chinensis	RchiOBHm_Chr7g0204371
rosa_laevigata	RLG00000003469
rosa_multiflora	Rmu_co8379943.1_g000001 Rmu_co8450077.1_g000001 Rmu_sc0002918.1_g000007 Rmu_sc0012666.1_g000001 Rmu_sc0014168.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253190
rosa_rugosa	Rorug07G0082600
rosa_samantha	Rh7AG212900 Rh7BG211000 Rh7CG226000 Rh7DG220200
rosa_wichuraiana	Rw7G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	131
AcvI	CACGTG	1 cut(s)	128
AfaI	GTAC	3 cut(s)	43, 170, 340
AflII	CTTAAG	1 cut(s)	367
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	229, 311
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	8 cut(s)	26, 194, 245, 395, 407, 464, 489, 503
AluI	AGCT	8 cut(s)	26, 194, 245, 395, 407, 464, 489, 503
AoxI	GGCC	4 cut(s)	34, 122, 138, 360
ApeKI	GCWGC	3 cut(s)	404, 486, 489
AspS9I	GGNCC	3 cut(s)	34, 67, 360
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	281
BbrPI	CACGTG	1 cut(s)	128
BbvI	GCAGC	3 cut(s)	416, 476, 498
BccI	CCATC	1 cut(s)	78
BceAI	ACGGC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	452
BclI	TGATCA	1 cut(s)	505
BfmI	CTRYAG	1 cut(s)	282
BfrI	CTTAAG	1 cut(s)	367
BglII	AGATCT	1 cut(s)	304
BisI	GCNGC	3 cut(s)	405, 487, 490
BlsI	GCNGC	3 cut(s)	406, 488, 491
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	452
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	3 cut(s)	34, 67, 360
BmiI	GGNNCC	2 cut(s)	35, 434
BmrFI	CCNGG	1 cut(s)	452
BmsI	GCATC	1 cut(s)	310
BpmI	CTGGAG	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bse1I	ACTGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	331
BseXI	GCAGC	3 cut(s)	416, 476, 498
BshFI	GGCC	4 cut(s)	36, 124, 140, 362
BsnI	GGCC	4 cut(s)	36, 124, 140, 362
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	3 cut(s)	256, 304, 505
BspANI	GGCC	4 cut(s)	36, 124, 140, 362
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	35, 434
BspTI	CTTAAG	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	331
BssMI	GATC	3 cut(s)	256, 304, 505
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	2 cut(s)	20, 343
BstAFI	CTTAAG	1 cut(s)	367
BstBAI	YACGTR	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	147, 465
BstKTI	GATC	3 cut(s)	259, 307, 508
BstMBI	GATC	3 cut(s)	256, 304, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 401, 483
BstNI	CCWGG	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	450
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	416, 476, 498
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	4 cut(s)	36, 124, 140, 362
BtsIMutI	CAGTG	3 cut(s)	16, 155, 294
Cac8I	GCNNGC	1 cut(s)	156
Cfr13I	GGNCC	3 cut(s)	34, 67, 360
Csp6I	GTAC	3 cut(s)	42, 169, 339
CviAII	CATG	5 cut(s)	181, 237, 254, 423, 443
CviQI	GTAC	3 cut(s)	42, 169, 339
DdeI	CTNAG	2 cut(s)	147, 465
DpnI	GATC	3 cut(s)	258, 306, 507
DpnII	GATC	3 cut(s)	256, 304, 505
EaeI	YGGCCR	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	131
Eco72I	CACGTG	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	281
FaeI	CATG	5 cut(s)	184, 240, 257, 426, 446
FatI	CATG	5 cut(s)	180, 236, 253, 422, 442
FauNDI	CATATG	2 cut(s)	10, 510
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	3 cut(s)	405, 487, 490
FriOI	GRGCYC	1 cut(s)	281
Fsp4HI	GCNGC	3 cut(s)	405, 487, 490
GluI	GCNGC	3 cut(s)	405, 487, 490
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	4 cut(s)	36, 124, 140, 362
Hin1II	CATG	5 cut(s)	184, 240, 257, 426, 446
HinfI	GANTC	3 cut(s)	92, 229, 299
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	4 cut(s)	16, 202, 529, 541
Hpy188I	TCNGA	2 cut(s)	111, 304
Hpy188III	TCNNGA	2 cut(s)	164, 308
Hpy8I	GTNNAC	4 cut(s)	16, 202, 529, 541
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	2 cut(s)	20, 343
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	266, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 401, 483
HpyF3I	CTNAG	2 cut(s)	147, 465
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	5 cut(s)	184, 240, 257, 426, 446
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	256, 304, 505
LmnI	GCTCC	2 cut(s)	250, 438
Lsp1109I	GCAGC	3 cut(s)	416, 476, 498
LweI	GCATC	1 cut(s)	310
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	3 cut(s)	258, 306, 507
MboI	GATC	3 cut(s)	256, 304, 505
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	1 cut(s)	117
MnlI	CCTC	4 cut(s)	151, 259, 268, 509
MseI	TTAA	1 cut(s)	368
MslI	CAYNNNNRTG	2 cut(s)	427, 524
MspA1I	CMGCKG	2 cut(s)	489, 503
MspCI	CTTAAG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	3 cut(s)	130, 401, 483
NdeI	CATATG	2 cut(s)	10, 510
NdeII	GATC	3 cut(s)	256, 304, 505
NlaIII	CATG	5 cut(s)	184, 240, 257, 426, 446
NlaIV	GGNNCC	2 cut(s)	35, 434
NmuCI	GTSAC	1 cut(s)	292
PfeI	GAWTC	3 cut(s)	92, 229, 299
PkrI	GCNGC	3 cut(s)	406, 488, 491
PmaCI	CACGTG	1 cut(s)	128
PmlI	CACGTG	1 cut(s)	128
Ppu21I	YACGTR	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	450
PspCI	CACGTG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	35, 434
PspPI	GGNCC	3 cut(s)	34, 67, 360
PsuI	RGATCY	1 cut(s)	304
PvuII	CAGCTG	2 cut(s)	489, 503
RsaI	GTAC	3 cut(s)	43, 170, 340
RsaNI	GTAC	3 cut(s)	42, 169, 339
RseI	CAYNNNNRTG	2 cut(s)	427, 524
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	3 cut(s)	405, 487, 490
Sau3AI	GATC	3 cut(s)	256, 304, 505
Sau96I	GGNCC	3 cut(s)	34, 67, 360
ScaI	AGTACT	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	1 cut(s)	281
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	2 cut(s)	427, 524
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	1 cut(s)	117
SspI	AATATT	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	450
TaaI	ACNGT	2 cut(s)	20, 343
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	388, 494
TasI	AATT	1 cut(s)	117
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	3 cut(s)	92, 229, 299
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	3 cut(s)	23, 155, 301
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	3 cut(s)	404, 486, 489
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	117, 169, 411
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	3 cut(s)	23, 155, 301
Vha464I	CTTAAG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	67
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.