Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014168.1

Orthogroup ID

OG0010404

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 954

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014168.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 493 bp

atgtatattgaggagttgaaaggtggggaaggtggagaagaagtggatttagggcatggaagggatggcaggggcatcgtggggtcggatgcgaaacgggtcttgatcggcgcgggggctcgtgccctgttttacccgactctgctttacaatgtcatcaggaataagcttcaggctgagtttcgctggtgggataaggtcgatgagtttgtattgttaggtgcggttccattccctactgatgtgcctcgcctaaaggaggtcggaatacattccataaggtatgcttgctggcgtccattccctactgatgtgcctcgcctaaaggaggtcggagttcgtggagtcatcacacttaatgagccatacgagactttggttccaacatctctttatcagtccaatggcattagccatctggtgatccctaccagagactactgctttgcaccatcgctgaatgatatatgtcgtgctgtaaacttcattaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

164

Amino Acids

18.4

Weight (kDa)

6.3

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35680
fragaria_vesca	FvH4_5g19640
malus_domestica	MD04G1061500.v1.1 MD06G1055300.v1.1
prunus_persica	Prupe.5G063900_v2.0.a1
pyrus_communis	pycom04g05520 pycom06g04630
rosa_chinensis	RchiOBHm_Chr7g0204371
rosa_laevigata	RLG00000003469
rosa_multiflora	Rmu_co8379943.1_g000001 Rmu_co8450077.1_g000001 Rmu_sc0002918.1_g000007 Rmu_sc0012666.1_g000001 Rmu_sc0014168.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253190
rosa_rugosa	Rorug07G0082600
rosa_samantha	Rh7AG212900 Rh7BG211000 Rh7CG226000 Rh7DG220200
rosa_wichuraiana	Rw7G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	113, 224
AclWI	GGATC	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	295
AfiI	CCNNNNNNNGG	2 cut(s)	259, 328
AgsI	TTSAA	1 cut(s)	19
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	2 cut(s)	365, 429
AlwI	GGATC	1 cut(s)	418
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AseI	ATTAAT	1 cut(s)	489
Asp700I	GAANNNNTTC	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	121
BauI	CACGAG	1 cut(s)	120
BccI	CCATC	3 cut(s)	59, 423, 460
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BcoDI	GTCTC	2 cut(s)	365, 429
BmiI	GGNNCC	2 cut(s)	228, 381
BmsI	GCATC	2 cut(s)	79, 84
BsaHI	GRCGYC	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 328
BseGI	GGATG	2 cut(s)	70, 94
BseLI	CCNNNNNNNGG	2 cut(s)	259, 328
BseMII	CTCAG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	259, 328
BsmAI	GTCTC	2 cut(s)	365, 429
Bsp1286I	GDGCHC	2 cut(s)	121, 127
Bsp143I	GATC	2 cut(s)	105, 423
BspACI	CCGC	2 cut(s)	113, 224
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	228, 381
BspPI	GGATC	1 cut(s)	418
BssMI	GATC	2 cut(s)	105, 423
BssNI	GRCGYC	1 cut(s)	295
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	289, 293
BstDEI	CTNAG	1 cut(s)	177
BstENI	CCTNNNNNAGG	2 cut(s)	257, 326
BstF5I	GGATG	2 cut(s)	70, 94
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	2 cut(s)	108, 426
BstMAI	GTCTC	2 cut(s)	365, 429
BstMBI	GATC	2 cut(s)	105, 423
BstSLI	GKGCMC	1 cut(s)	127
BstUI	CGCG	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	438
BtsCI	GGATG	2 cut(s)	70, 94
Cac8I	GCNNGC	2 cut(s)	289, 293
CfoI	GCGC	1 cut(s)	113
CseI	GACGC	1 cut(s)	284
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	5 cut(s)	119, 169, 176, 364, 414
CviKI_1	RGCY	5 cut(s)	119, 169, 176, 364, 414
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	2 cut(s)	107, 425
DpnII	GATC	2 cut(s)	105, 423
Eco24I	GRGCYC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	155
EcoNI	CCTNNNNNAGG	2 cut(s)	257, 326
EcoT38I	GRGCYC	1 cut(s)	121
FaeI	CATG	1 cut(s)	59
FaiI	YATR	7 cut(s)	6, 57, 278, 285, 367, 467, 469
FalI	AAGNNNNNCTT	2 cut(s)	271, 303
FatI	CATG	1 cut(s)	55
FauI	CCCGC	1 cut(s)	106
FokI	GGATG	2 cut(s)	77, 101
FriOI	GRGCYC	1 cut(s)	121
GlaI	GCGC	1 cut(s)	112
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	2 cut(s)	139, 345
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	3 cut(s)	88, 266, 335
Hpy188III	TCNNGA	2 cut(s)	103, 160
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	2 cut(s)	23, 54
HpyCH4V	TGCA	1 cut(s)	449
HpyF3I	CTNAG	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	105, 423
LpnPI	CCDG	8 cut(s)	55, 140, 145, 158, 172, 277, 404, 445
LweI	GCATC	2 cut(s)	79, 84
MalI	GATC	2 cut(s)	107, 425
MboI	GATC	2 cut(s)	105, 423
MboII	GAAGA	1 cut(s)	50
MhlI	GDGCHC	2 cut(s)	121, 127
MlyI	GAGTC	2 cut(s)	133, 354
MmeI	TCCRAC	4 cut(s)	66, 244, 313, 407
MnlI	CCTC	5 cut(s)	4, 253, 258, 322, 327
MroXI	GAANNNNTTC	1 cut(s)	271
MseI	TTAA	2 cut(s)	357, 489
MvnI	CGCG	1 cut(s)	113
NdeII	GATC	2 cut(s)	105, 423
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	2 cut(s)	228, 381
PdmI	GAANNNNTTC	1 cut(s)	271
PleI	GAGTC	2 cut(s)	133, 353
PpsI	GAGTC	2 cut(s)	133, 353
PshBI	ATTAAT	1 cut(s)	489
PspN4I	GGNNCC	2 cut(s)	228, 381
SaqAI	TTAA	2 cut(s)	357, 489
Sau3AI	GATC	2 cut(s)	105, 423
SchI	GAGTC	2 cut(s)	133, 354
SduI	GDGCHC	2 cut(s)	121, 127
SetI	ASST	8 cut(s)	25, 34, 171, 201, 223, 264, 284, 333
SfaNI	GCATC	2 cut(s)	79, 84
SsiI	CCGC	2 cut(s)	113, 224
TaqI	TCGA	1 cut(s)	201
Tru1I	TTAA	2 cut(s)	357, 489
Tru9I	TTAA	2 cut(s)	357, 489
TspDTI	ATGAA	1 cut(s)	475
VspI	ATTAAT	1 cut(s)	489
XagI	CCTNNNNNAGG	2 cut(s)	257, 326
XmnI	GAANNNNTTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.