Rw7G018440

dual specificity protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0010404
Physical Location & Seq
Forward (+)
19930146 .. 19933234
3089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G018440.1

Sequence Viewer

Length: 987 bp
ATGTATATTGAGGAGTTGAAAGGTGGGGAAGGTGGAGAAGAAGTGGATTTAGGGCATGGAAGGGATGGCAGGGGCATCGTGGGGTCGGATGCGAAACGGGTCTTGATCGGCGCGGGGGCTCGTGCCCTGTTTTACCCGACTCTGCTTTACAATGTCATCAGGAATAAGCTTCAGGCTGAGTTTCGCTGGTGGGATAAGGTCGATGAGTTTGTATTGTTAGGTGCGGTTCCATTCCCTACTGATGTGCCTCGCCTAAAGGAGGTCGGAGTTCGTGGAGTCATCACACTTAATGAGCCATACGAGACTTTGGTTCCAACATCTCTTTATCAGTCCAATGGCATTAGCCATCTGGTGATCCCTACCAGAGACTACTGCTTTGCACCATCGCTGAATGATATATGTCGTGCTGTAAACTTCATTAATGAAAATGCATCACGTGGGACAACAACATATGTTCACTGTAAAGCTGGACGGGGCCGTAGTACGACCATTGTTATCTGCTACTTGGTCCATCACAAGCAGATGACACCTGATTCTGCCTATGAATATCTGAAGTCAATTCGGCCACGTGTGCTTTTGGCCTCTGCTCAGTGGCAGGCTGTTCAGGAGTACTACTATTTCATGGTGAAGAAAGCTGTGGTTTACAGCCACTTGACTAATCTAATATTGAATCCCCCATGTTCAGCTCCCTCACATGATCTCCTTGCATTTGACGAGGGCTCTGTAGTAGTGGTCACTGAATCAGATCTTGAAGGATATGATGCAAATCTCCAGTCTGGTACTGTTGGAAATGAGATATGGGCTGACTTGAGTGTGGTGTATCGGGTTCGAGTAGCTGGTCAGGCAGCTCTCACAAGGATTTCATGCCTGTGGCTCCGTTGCCATGCCCACCAGGAGAGTTCAGCTAAGAAGTTGGGCAGGGAAAGCAGCTGCTCGATTACAGCTGATCATCTGGGAGGCATTAGCGTGGACATACAAGTTTACTGA

Protein Analysis

328

Amino Acids

36.36

Weight (kDa)

6.37

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTP-SAK PF22784 80 - 180 2.8e-14 Swiss Army Knife protein, DSP-PTPase phosphatase domain
Tc-R-P PF22785 83 - 173 1.6e-13 Polymorphic toxin system, DSP-PTPase phosphatase
DSPc PF00782 103 - 205 2.7e-18 Dual specificity phosphatase, catalytic domain
PTP-NADK PF22741 118 - 176 9.2e-06 DSP-PTPase phosphatase fused to NAD+ Kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 113
AciI CCGC 2 cut(s) 113, 224
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 563
AcuI CTGAAG 2 cut(s) 155, 572
AcvI CACGTG 2 cut(s) 437, 569
AfaI GTAC 3 cut(s) 484, 611, 781
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 568
AgsI TTSAA 3 cut(s) 19, 670, 752
AjnI CCWGG 1 cut(s) 891
AluBI AGCT 9 cut(s) 169, 467, 635, 686, 836, 848, 905, 930, 944
AluI AGCT 9 cut(s) 169, 467, 635, 686, 836, 848, 905, 930, 944
Alw26I GTCTC 2 cut(s) 296, 360
AlwI GGATC 1 cut(s) 349
AoxI GGCC 3 cut(s) 475, 563, 579
ApeKI GCWGC 3 cut(s) 845, 927, 930
ArsI GACNNNNNNTTYG 4 cut(s) 359, 391, 758, 790
AseI ATTAAT 1 cut(s) 420
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 475, 508
AsuHPI GGTGA 2 cut(s) 364, 637
AvaII GGWCC 1 cut(s) 508
BaeGI GKGCMC 1 cut(s) 127
BanII GRGCYC 2 cut(s) 121, 722
BauI CACGAG 1 cut(s) 120
BbrPI CACGTG 2 cut(s) 437, 569
BbvI GCAGC 3 cut(s) 857, 917, 939
BccI CCATC 4 cut(s) 59, 354, 391, 519
BceAI ACGGC 1 cut(s) 462
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 1 cut(s) 893
BclI TGATCA 1 cut(s) 946
BcoDI GTCTC 2 cut(s) 296, 360
BfmI CTRYAG 1 cut(s) 723
BglII AGATCT 1 cut(s) 745
BisI GCNGC 3 cut(s) 846, 928, 931
BlsI GCNGC 3 cut(s) 847, 929, 932
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 1 cut(s) 893
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 2 cut(s) 475, 508
BmiI GGNNCC 4 cut(s) 228, 312, 476, 875
BmrFI CCNGG 1 cut(s) 893
BmsI GCATC 4 cut(s) 79, 84, 440, 751
BpmI CTGGAG 1 cut(s) 755
BpuEI CTTGAG 1 cut(s) 829
BsaAI YACGTR 2 cut(s) 437, 569
BsaBI GATNNNNATC 1 cut(s) 765
BsaXI ACNNNNNCTCC 4 cut(s) 27, 57, 684, 714
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 772
Bse8I GATNNNNATC 1 cut(s) 765
BseBI CCWGG 1 cut(s) 893
BseGI GGATG 2 cut(s) 70, 94
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 168, 602
BseNI ACTGG 1 cut(s) 772
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 3 cut(s) 857, 917, 939
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 3 cut(s) 477, 565, 581
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 296, 360
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 3 cut(s) 477, 565, 581
Bsp1286I GDGCHC 3 cut(s) 121, 127, 722
Bsp143I GATC 5 cut(s) 105, 354, 697, 745, 946
BspACI CCGC 2 cut(s) 113, 224
BspANI GGCC 3 cut(s) 477, 565, 581
BspCNI CTCAG 2 cut(s) 169, 601
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 4 cut(s) 228, 312, 476, 875
BspPI GGATC 1 cut(s) 349
BsrI ACTGG 1 cut(s) 772
BssMI GATC 5 cut(s) 105, 354, 697, 745, 946
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 893
Bst4CI ACNGT 2 cut(s) 461, 784
BstBAI YACGTR 2 cut(s) 437, 569
BstC8I GCNNGC 1 cut(s) 597
BstDEI CTNAG 3 cut(s) 177, 588, 906
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 70, 94
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 5 cut(s) 108, 357, 700, 748, 949
BstMAI GTCTC 2 cut(s) 296, 360
BstMBI GATC 5 cut(s) 105, 354, 697, 745, 946
BstMWI GCNNNNNNNGC 3 cut(s) 571, 842, 924
BstNI CCWGG 1 cut(s) 893
BstSCI CCNGG 1 cut(s) 891
BstSFI CTRYAG 1 cut(s) 723
BstSLI GKGCMC 1 cut(s) 127
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 3 cut(s) 857, 917, 939
BstX2I RGATCY 1 cut(s) 745
BstYI RGATCY 1 cut(s) 745
BsuRI GGCC 3 cut(s) 477, 565, 581
BtgZI GCGATG 1 cut(s) 369
BtsCI GGATG 2 cut(s) 70, 94
BtsIMutI CAGTG 3 cut(s) 457, 596, 735
Cac8I GCNNGC 1 cut(s) 597
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 475, 508
Csp6I GTAC 3 cut(s) 483, 610, 780
CviAII CATG 6 cut(s) 56, 622, 678, 695, 864, 884
CviQI GTAC 3 cut(s) 483, 610, 780
DdeI CTNAG 3 cut(s) 177, 588, 906
DpnI GATC 5 cut(s) 107, 356, 699, 747, 948
DpnII GATC 5 cut(s) 105, 354, 697, 745, 946
EaeI YGGCCR 1 cut(s) 563
Eco24I GRGCYC 2 cut(s) 121, 722
Eco47I GGWCC 1 cut(s) 508
Eco57I CTGAAG 2 cut(s) 155, 572
Eco72I CACGTG 2 cut(s) 437, 569
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 891
EcoT22I ATGCAT 1 cut(s) 433
EcoT38I GRGCYC 2 cut(s) 121, 722
FaeI CATG 6 cut(s) 59, 625, 681, 698, 867, 887
FaqI GGGAC 1 cut(s) 454
FatI CATG 6 cut(s) 55, 621, 677, 694, 863, 883
FauI CCCGC 1 cut(s) 106
FauNDI CATATG 1 cut(s) 451
FbaI TGATCA 1 cut(s) 946
Fnu4HI GCNGC 3 cut(s) 846, 928, 931
FokI GGATG 2 cut(s) 77, 101
FriOI GRGCYC 2 cut(s) 121, 722
Fsp4HI GCNGC 3 cut(s) 846, 928, 931
GlaI GCGC 1 cut(s) 112
GluI GCNGC 3 cut(s) 846, 928, 931
GsuI CTGGAG 1 cut(s) 755
HaeIII GGCC 3 cut(s) 477, 565, 581
HhaI GCGC 1 cut(s) 113
Hin1II CATG 6 cut(s) 59, 625, 681, 698, 867, 887
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 5 cut(s) 139, 276, 533, 670, 740
HphI GGTGA 2 cut(s) 364, 637
Hpy166II GTNNAC 5 cut(s) 412, 457, 643, 970, 982
Hpy188I TCNGA 4 cut(s) 88, 266, 552, 745
Hpy188III TCNNGA 4 cut(s) 103, 160, 605, 749
Hpy8I GTNNAC 5 cut(s) 412, 457, 643, 970, 982
HpyAV CCTTC 3 cut(s) 23, 54, 746
HpyCH4III ACNGT 2 cut(s) 461, 784
HpyCH4IV ACGT 2 cut(s) 436, 568
HpyCH4V TGCA 4 cut(s) 380, 431, 707, 764
HpyF10VI GCNNNNNNNGC 3 cut(s) 571, 842, 924
HpyF3I CTNAG 3 cut(s) 177, 588, 906
HpySE526I ACGT 2 cut(s) 436, 568
Hsp92II CATG 6 cut(s) 59, 625, 681, 698, 867, 887
HspAI GCGC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 946
Kzo9I GATC 5 cut(s) 105, 354, 697, 745, 946
LmnI GCTCC 2 cut(s) 691, 879
Lsp1109I GCAGC 3 cut(s) 857, 917, 939
LweI GCATC 4 cut(s) 79, 84, 440, 751
MaeII ACGT 2 cut(s) 436, 568
MaeIII GTNAC 1 cut(s) 733
MalI GATC 5 cut(s) 107, 356, 699, 747, 948
MboI GATC 5 cut(s) 105, 354, 697, 745, 946
MboII GAAGA 2 cut(s) 50, 640
MflI RGATCY 1 cut(s) 745
MhlI GDGCHC 3 cut(s) 121, 127, 722
MluCI AATT 1 cut(s) 558
MlyI GAGTC 2 cut(s) 133, 285
MmeI TCCRAC 4 cut(s) 66, 244, 338, 766
MnlI CCTC 7 cut(s) 4, 253, 258, 592, 700, 709, 950
Mph1103I ATGCAT 1 cut(s) 433
MseI TTAA 2 cut(s) 288, 420
MslI CAYNNNNRTG 2 cut(s) 868, 965
MspA1I CMGCKG 2 cut(s) 930, 944
MspR9I CCNGG 1 cut(s) 893
MvaI CCWGG 1 cut(s) 893
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 571, 842, 924
NdeI CATATG 1 cut(s) 451
NdeII GATC 5 cut(s) 105, 354, 697, 745, 946
NlaIII CATG 6 cut(s) 59, 625, 681, 698, 867, 887
NlaIV GGNNCC 4 cut(s) 228, 312, 476, 875
NmuCI GTSAC 1 cut(s) 733
NsiI ATGCAT 1 cut(s) 433
PfeI GAWTC 3 cut(s) 533, 670, 740
PkrI GCNGC 3 cut(s) 847, 929, 932
PleI GAGTC 2 cut(s) 133, 284
PmaCI CACGTG 2 cut(s) 437, 569
PmlI CACGTG 2 cut(s) 437, 569
PpsI GAGTC 2 cut(s) 133, 284
Ppu21I YACGTR 2 cut(s) 437, 569
PshBI ATTAAT 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 891
PspCI CACGTG 2 cut(s) 437, 569
PspGI CCWGG 1 cut(s) 891
PspN4I GGNNCC 4 cut(s) 228, 312, 476, 875
PspPI GGNCC 2 cut(s) 475, 508
PsuI RGATCY 1 cut(s) 745
PvuII CAGCTG 2 cut(s) 930, 944
RsaI GTAC 3 cut(s) 484, 611, 781
RsaNI GTAC 3 cut(s) 483, 610, 780
RseI CAYNNNNRTG 2 cut(s) 868, 965
SaqAI TTAA 2 cut(s) 288, 420
SatI GCNGC 3 cut(s) 846, 928, 931
Sau3AI GATC 5 cut(s) 105, 354, 697, 745, 946
Sau96I GGNCC 2 cut(s) 475, 508
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 2 cut(s) 133, 285
ScrFI CCNGG 1 cut(s) 893
SduI GDGCHC 3 cut(s) 121, 127, 722
SfaNI GCATC 4 cut(s) 79, 84, 440, 751
SfcI CTRYAG 1 cut(s) 723
SinI GGWCC 1 cut(s) 508
SmiMI CAYNNNNRTG 2 cut(s) 868, 965
SmlI CTYRAG 1 cut(s) 808
SmoI CTYRAG 1 cut(s) 808
Sse9I AATT 1 cut(s) 558
SsiI CCGC 2 cut(s) 113, 224
SspI AATATT 1 cut(s) 666
StyD4I CCNGG 1 cut(s) 891
TaaI ACNGT 2 cut(s) 461, 784
TaiI ACGT 2 cut(s) 439, 571
TaqI TCGA 3 cut(s) 201, 829, 935
TasI AATT 1 cut(s) 558
TatI WGTACW 1 cut(s) 609
TfiI GAWTC 3 cut(s) 533, 670, 740
Tru1I TTAA 2 cut(s) 288, 420
Tru9I TTAA 2 cut(s) 288, 420
TscAI CASTG 3 cut(s) 464, 596, 742
TseFI GTSAC 1 cut(s) 733
TseI GCWGC 3 cut(s) 845, 927, 930
Tsp45I GTSAC 1 cut(s) 733
TspDTI ATGAA 5 cut(s) 406, 438, 558, 610, 852
TspGWI ACGGA 1 cut(s) 866
TspRI CASTG 3 cut(s) 464, 596, 742
VpaK11BI GGWCC 1 cut(s) 508
VspI ATTAAT 1 cut(s) 420
XagI CCTNNNNNAGG 1 cut(s) 257
ZrmI AGTACT 1 cut(s) 611
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.