Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010404

Physical Location & Seq

Genomic Coordinates Reverse (-)

48817951 .. 48820363

Gene Structure 2413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003469

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTATATTGAGGAGTTGAAAGGTGGGGAAGGTGGAGAAGAAGTGGATTTAGGGCATGGAAGGGATGGCAGGGGCATCGTGGGGTCGGATGCGAAACGGGTCTTGATCGGCGCAGGGGCTCGTGCGCTGTTTTACCCGACTCTGCTTTACAATGTCATCAGGAATAAGCTTCAGGCTGAGTTTCGCTGGTGGGATAAGGTCGATGAGTTTGTATTGTTAGGTGCAGTTCCATTCCCTACTGATGTGCCTCGCTTAAAGGAGGTCGGAGTTCGGGGAGTCATCACACTTAATGAGCCATATGAGACCTTGGTTCCAACATCTCTTTATCAGTCCAATGGCATTAGCCATCTGGTGATCCCTACCAGAGACTACTGCTTTGCACCATCGCTGAATGATATAGGTCGTGCTGTAAACTTCATTAATGAAAATGCATCAAGTGGGACGACAACATATGTTCACTGTAAAGCTGGACGGGGCCGTAGTACGACCATTGTTATCTGCTACTTGGTCCATCACAAGCAGATGACACCTGATTCTGCCTATGAATATCTGAAGTCAATTAGGCCACGTGTCCTTTTGGCCTCTGCTCAGTGGCAGGCTGTTCAGGAGTACTACTATATCATGGTGAAGAAAGCTGTGGTTTACAGCCACTTGACTAATCTAATATTGAATCCCCCATGTTCAGCTCCCTCACATGATCTCCTTGCATTTGACGAGGGCTCGGTAGTAGTGGTCACTGAATCAGATCTTGAAGGATATGATGCAAATCTCCAGTCTGGTACTGGGGGAAATGAGATATGGGCTGACTTAAGTGTGGTCTATCGGGTTCGAGTAGCTGGTCAGGCAGCTCTCACAAGGATTTCATGCCTGTGGCTCCGTTGCCATGCCCACCAGGAGAGTTCAGCTAAGAAGTTGGGCAGGGAAAGCAGCTGCTCAATTACAGCTGATCATCTCGGAGGCATTAGCGTGGACATACAAGTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

329

Amino Acids

36.17

Weight (kDa)

6.21

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	80 - 180	8.8e-15	Swiss Army Knife protein, DSP-PTPase phosphatase domain
Tc-R-P	PF22785	83 - 173	6.5e-14	Polymorphic toxin system, DSP-PTPase phosphatase
DSPc	PF00782	103 - 205	1.8e-18	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35680
fragaria_vesca	FvH4_5g19640
malus_domestica	MD04G1061500.v1.1 MD06G1055300.v1.1
prunus_persica	Prupe.5G063900_v2.0.a1
pyrus_communis	pycom04g05520 pycom06g04630
rosa_chinensis	RchiOBHm_Chr7g0204371
rosa_laevigata	RLG00000003469
rosa_multiflora	Rmu_co8379943.1_g000001 Rmu_co8450077.1_g000001 Rmu_sc0002918.1_g000007 Rmu_sc0012666.1_g000001 Rmu_sc0014168.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253190
rosa_rugosa	Rorug07G0082600
rosa_samantha	Rh7AG212900 Rh7BG211000 Rh7CG226000 Rh7DG220200
rosa_wichuraiana	Rw7G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	349
AcuI	CTGAAG	2 cut(s)	155, 572
AcvI	CACGTG	1 cut(s)	569
AfaI	GTAC	3 cut(s)	484, 611, 781
AflII	CTTAAG	1 cut(s)	808
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	3 cut(s)	19, 670, 752
AjnI	CCWGG	1 cut(s)	891
AluBI	AGCT	9 cut(s)	169, 467, 635, 686, 836, 848, 905, 930, 944
AluI	AGCT	9 cut(s)	169, 467, 635, 686, 836, 848, 905, 930, 944
Alw26I	GTCTC	2 cut(s)	296, 360
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	3 cut(s)	475, 563, 579
ApeKI	GCWGC	3 cut(s)	845, 927, 930
ArsI	GACNNNNNNTTYG	4 cut(s)	359, 391, 758, 790
AseI	ATTAAT	1 cut(s)	420
AspLEI	GCGC	2 cut(s)	113, 127
AspS9I	GGNCC	2 cut(s)	475, 508
AsuHPI	GGTGA	2 cut(s)	364, 637
AvaII	GGWCC	1 cut(s)	508
BanII	GRGCYC	2 cut(s)	121, 722
BauI	CACGAG	1 cut(s)	120
BbrPI	CACGTG	1 cut(s)	569
BbvI	GCAGC	3 cut(s)	857, 917, 939
BccI	CCATC	4 cut(s)	59, 354, 391, 519
BceAI	ACGGC	1 cut(s)	462
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	1 cut(s)	893
BclI	TGATCA	1 cut(s)	946
BcoDI	GTCTC	2 cut(s)	296, 360
BfrI	CTTAAG	1 cut(s)	808
BglII	AGATCT	1 cut(s)	745
BisI	GCNGC	3 cut(s)	846, 928, 931
BlsI	GCNGC	3 cut(s)	847, 929, 932
BmcAI	AGTACT	1 cut(s)	611
Bme1390I	CCNGG	1 cut(s)	893
Bme18I	GGWCC	1 cut(s)	508
BmgT120I	GGNCC	2 cut(s)	475, 508
BmiI	GGNNCC	3 cut(s)	312, 476, 875
BmrFI	CCNGG	1 cut(s)	893
BmrI	ACTGGG	1 cut(s)	792
BmsI	GCATC	4 cut(s)	79, 84, 440, 751
BmuI	ACTGGG	1 cut(s)	792
BpmI	CTGGAG	1 cut(s)	755
BsaAI	YACGTR	1 cut(s)	569
BsaBI	GATNNNNATC	1 cut(s)	765
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 57, 684, 714
Bse1I	ACTGG	2 cut(s)	772, 787
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	1 cut(s)	893
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	70, 94
BseJI	GATNNNNATC	1 cut(s)	765
BseMII	CTCAG	2 cut(s)	168, 602
BseNI	ACTGG	2 cut(s)	772, 787
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	3 cut(s)	857, 917, 939
BsgI	GTGCAG	1 cut(s)	243
BshFI	GGCC	3 cut(s)	477, 565, 581
BslFI	GGGAC	1 cut(s)	454
BsmAI	GTCTC	2 cut(s)	296, 360
BsmFI	GGGAC	1 cut(s)	454
BsnI	GGCC	3 cut(s)	477, 565, 581
Bso31I	GGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	121, 722
Bsp143I	GATC	5 cut(s)	105, 354, 697, 745, 946
BspANI	GGCC	3 cut(s)	477, 565, 581
BspCNI	CTCAG	2 cut(s)	169, 601
BspLI	GGNNCC	3 cut(s)	312, 476, 875
BspPI	GGATC	1 cut(s)	349
BspTI	CTTAAG	1 cut(s)	808
BspTNI	GGTCTC	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	772, 787
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	5 cut(s)	105, 354, 697, 745, 946
BssSI	CACGAG	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	893
Bst4CI	ACNGT	1 cut(s)	461
BstAFI	CTTAAG	1 cut(s)	808
BstBAI	YACGTR	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	3 cut(s)	177, 588, 906
BstF5I	GGATG	2 cut(s)	70, 94
BstHHI	GCGC	2 cut(s)	113, 127
BstKTI	GATC	5 cut(s)	108, 357, 700, 748, 949
BstMAI	GTCTC	2 cut(s)	296, 360
BstMBI	GATC	5 cut(s)	105, 354, 697, 745, 946
BstMWI	GCNNNNNNNGC	2 cut(s)	842, 924
BstNI	CCWGG	1 cut(s)	893
BstSCI	CCNGG	1 cut(s)	891
BstV1I	GCAGC	3 cut(s)	857, 917, 939
BstX2I	RGATCY	1 cut(s)	745
BstYI	RGATCY	1 cut(s)	745
BsuRI	GGCC	3 cut(s)	477, 565, 581
BtgZI	GCGATG	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	70, 94
BtsIMutI	CAGTG	3 cut(s)	457, 596, 735
Cac8I	GCNNGC	1 cut(s)	597
CfoI	GCGC	2 cut(s)	113, 127
Cfr13I	GGNCC	2 cut(s)	475, 508
Csp6I	GTAC	3 cut(s)	483, 610, 780
CviAII	CATG	6 cut(s)	56, 622, 678, 695, 864, 884
CviQI	GTAC	3 cut(s)	483, 610, 780
DdeI	CTNAG	3 cut(s)	177, 588, 906
DpnI	GATC	5 cut(s)	107, 356, 699, 747, 948
DpnII	GATC	5 cut(s)	105, 354, 697, 745, 946
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	121, 722
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	508
Eco57I	CTGAAG	2 cut(s)	155, 572
Eco72I	CACGTG	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	891
EcoT14I	CCWWGG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	2 cut(s)	121, 722
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	6 cut(s)	59, 625, 681, 698, 867, 887
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	6 cut(s)	55, 621, 677, 694, 863, 883
FauNDI	CATATG	2 cut(s)	298, 451
FbaI	TGATCA	1 cut(s)	946
Fnu4HI	GCNGC	3 cut(s)	846, 928, 931
FokI	GGATG	2 cut(s)	77, 101
FriOI	GRGCYC	2 cut(s)	121, 722
Fsp4HI	GCNGC	3 cut(s)	846, 928, 931
GlaI	GCGC	2 cut(s)	112, 126
GluI	GCNGC	3 cut(s)	846, 928, 931
GsuI	CTGGAG	1 cut(s)	755
HaeIII	GGCC	3 cut(s)	477, 565, 581
HhaI	GCGC	2 cut(s)	113, 127
Hin1II	CATG	6 cut(s)	59, 625, 681, 698, 867, 887
Hin6I	GCGC	2 cut(s)	111, 125
HinP1I	GCGC	2 cut(s)	111, 125
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	5 cut(s)	139, 276, 533, 670, 740
HphI	GGTGA	2 cut(s)	364, 637
Hpy166II	GTNNAC	5 cut(s)	412, 457, 643, 970, 982
Hpy188I	TCNGA	5 cut(s)	88, 266, 552, 745, 956
Hpy188III	TCNNGA	4 cut(s)	103, 160, 605, 749
Hpy8I	GTNNAC	5 cut(s)	412, 457, 643, 970, 982
HpyAV	CCTTC	3 cut(s)	23, 54, 746
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	5 cut(s)	224, 380, 431, 707, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	842, 924
HpyF3I	CTNAG	3 cut(s)	177, 588, 906
HpySE526I	ACGT	1 cut(s)	568
Hsp92II	CATG	6 cut(s)	59, 625, 681, 698, 867, 887
HspAI	GCGC	2 cut(s)	111, 125
Ksp22I	TGATCA	1 cut(s)	946
Kzo9I	GATC	5 cut(s)	105, 354, 697, 745, 946
LmnI	GCTCC	2 cut(s)	691, 879
Lsp1109I	GCAGC	3 cut(s)	857, 917, 939
LweI	GCATC	4 cut(s)	79, 84, 440, 751
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	1 cut(s)	733
MalI	GATC	5 cut(s)	107, 356, 699, 747, 948
MboI	GATC	5 cut(s)	105, 354, 697, 745, 946
MboII	GAAGA	2 cut(s)	50, 640
MflI	RGATCY	1 cut(s)	745
MhlI	GDGCHC	2 cut(s)	121, 722
MluCI	AATT	2 cut(s)	558, 936
MlyI	GAGTC	2 cut(s)	133, 285
MmeI	TCCRAC	3 cut(s)	66, 244, 338
MnlI	CCTC	7 cut(s)	4, 253, 258, 592, 700, 709, 950
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	4 cut(s)	254, 288, 420, 809
MslI	CAYNNNNRTG	2 cut(s)	868, 965
MspA1I	CMGCKG	2 cut(s)	930, 944
MspCI	CTTAAG	1 cut(s)	808
MspR9I	CCNGG	1 cut(s)	893
MvaI	CCWGG	1 cut(s)	893
MwoI	GCNNNNNNNGC	2 cut(s)	842, 924
NdeI	CATATG	2 cut(s)	298, 451
NdeII	GATC	5 cut(s)	105, 354, 697, 745, 946
NlaIII	CATG	6 cut(s)	59, 625, 681, 698, 867, 887
NlaIV	GGNNCC	3 cut(s)	312, 476, 875
NmuCI	GTSAC	1 cut(s)	733
NsiI	ATGCAT	1 cut(s)	433
PfeI	GAWTC	3 cut(s)	533, 670, 740
PkrI	GCNGC	3 cut(s)	847, 929, 932
PleI	GAGTC	2 cut(s)	133, 284
PmaCI	CACGTG	1 cut(s)	569
PmlI	CACGTG	1 cut(s)	569
PpsI	GAGTC	2 cut(s)	133, 284
Ppu21I	YACGTR	1 cut(s)	569
PshBI	ATTAAT	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	891
PspCI	CACGTG	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	891
PspN4I	GGNNCC	3 cut(s)	312, 476, 875
PspPI	GGNCC	2 cut(s)	475, 508
PsuI	RGATCY	1 cut(s)	745
PvuII	CAGCTG	2 cut(s)	930, 944
RsaI	GTAC	3 cut(s)	484, 611, 781
RsaNI	GTAC	3 cut(s)	483, 610, 780
RseI	CAYNNNNRTG	2 cut(s)	868, 965
SaqAI	TTAA	4 cut(s)	254, 288, 420, 809
SatI	GCNGC	3 cut(s)	846, 928, 931
Sau3AI	GATC	5 cut(s)	105, 354, 697, 745, 946
Sau96I	GGNCC	2 cut(s)	475, 508
ScaI	AGTACT	1 cut(s)	611
SchI	GAGTC	2 cut(s)	133, 285
ScrFI	CCNGG	1 cut(s)	893
SduI	GDGCHC	2 cut(s)	121, 722
SfaNI	GCATC	4 cut(s)	79, 84, 440, 751
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	2 cut(s)	868, 965
SmlI	CTYRAG	1 cut(s)	808
SmoI	CTYRAG	1 cut(s)	808
Sse9I	AATT	2 cut(s)	558, 936
SspI	AATATT	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	891
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	2 cut(s)	201, 829
TasI	AATT	2 cut(s)	558, 936
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	3 cut(s)	533, 670, 740
Tru1I	TTAA	4 cut(s)	254, 288, 420, 809
Tru9I	TTAA	4 cut(s)	254, 288, 420, 809
TscAI	CASTG	3 cut(s)	464, 596, 742
TseFI	GTSAC	1 cut(s)	733
TseI	GCWGC	3 cut(s)	845, 927, 930
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	4 cut(s)	406, 438, 558, 852
TspGWI	ACGGA	1 cut(s)	866
TspRI	CASTG	3 cut(s)	464, 596, 742
Vha464I	CTTAAG	1 cut(s)	808
VpaK11BI	GGWCC	1 cut(s)	508
VspI	ATTAAT	1 cut(s)	420
XcmI	CCANNNNNNNNNTGG	1 cut(s)	779
ZrmI	AGTACT	1 cut(s)	611
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.