Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012666.1

Orthogroup ID

OG0010404

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1753

Gene Structure 1753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012666.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgtatattgaggagttgaaaggtggggaaggtggagaagaagtggatttagggcatggaagggatggcaggggcatcgtggggtcggatgcgaaacgggtcttgatcggcgcgggggctcgtgccctgttttacccgactctgctttacaatgtcatcaggaataagcttcaggctgagtttcgctggtgggataaggtcgatgagtttgtattgttaggtgcggttccattccctactgatgtgcctcgcctaaaggaggtcggagttcgtggagtcataacacttaatgagccatacgagactttggttccaacatctctttatcagtccaatggcattagccatctggtgatccctaccagagactactgctttgcaccatcgctgaatgatatatgtcgtgctgtaaacttcattaatgaaaatgcatcacgtgggacaacaacatatgttcactgtaaagctggacggggccgtagtacgaccattgttatctgctacttggtccatcacaagcagatgacacctgattctgcctatgaatatctgaagtcaattcggccacgtgtgcttttggcctctgctcagtggcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

199

Amino Acids

22.26

Weight (kDa)

8.32

Isoelectric Point (pI)

30.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35680
fragaria_vesca	FvH4_5g19640
malus_domestica	MD04G1061500.v1.1 MD06G1055300.v1.1
prunus_persica	Prupe.5G063900_v2.0.a1
pyrus_communis	pycom04g05520 pycom06g04630
rosa_chinensis	RchiOBHm_Chr7g0204371
rosa_laevigata	RLG00000003469
rosa_multiflora	Rmu_co8379943.1_g000001 Rmu_co8450077.1_g000001 Rmu_sc0002918.1_g000007 Rmu_sc0012666.1_g000001 Rmu_sc0014168.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253190
rosa_rugosa	Rorug07G0082600
rosa_samantha	Rh7AG212900 Rh7BG211000 Rh7CG226000 Rh7DG220200
rosa_wichuraiana	Rw7G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	113, 224
AclWI	GGATC	1 cut(s)	349
AcoI	YGGCCR	1 cut(s)	563
AcuI	CTGAAG	2 cut(s)	155, 572
AcvI	CACGTG	2 cut(s)	437, 569
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	1 cut(s)	19
AluBI	AGCT	2 cut(s)	169, 467
AluI	AGCT	2 cut(s)	169, 467
Alw26I	GTCTC	2 cut(s)	296, 360
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	3 cut(s)	475, 563, 579
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AseI	ATTAAT	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	475, 508
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	121
BauI	CACGAG	1 cut(s)	120
BbrPI	CACGTG	2 cut(s)	437, 569
BccI	CCATC	4 cut(s)	59, 354, 391, 519
BceAI	ACGGC	1 cut(s)	462
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BcoDI	GTCTC	2 cut(s)	296, 360
Bme18I	GGWCC	1 cut(s)	508
BmgT120I	GGNCC	2 cut(s)	475, 508
BmiI	GGNNCC	3 cut(s)	228, 312, 476
BmsI	GCATC	3 cut(s)	79, 84, 440
BsaAI	YACGTR	2 cut(s)	437, 569
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
BseGI	GGATG	2 cut(s)	70, 94
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	3 cut(s)	477, 565, 581
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	2 cut(s)	296, 360
BsmFI	GGGAC	1 cut(s)	454
BsnI	GGCC	3 cut(s)	477, 565, 581
Bsp1286I	GDGCHC	2 cut(s)	121, 127
Bsp143I	GATC	2 cut(s)	105, 354
BspACI	CCGC	2 cut(s)	113, 224
BspANI	GGCC	3 cut(s)	477, 565, 581
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	3 cut(s)	228, 312, 476
BspPI	GGATC	1 cut(s)	349
BssMI	GATC	2 cut(s)	105, 354
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	461
BstBAI	YACGTR	2 cut(s)	437, 569
BstDEI	CTNAG	2 cut(s)	177, 588
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	70, 94
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	2 cut(s)	108, 357
BstMAI	GTCTC	2 cut(s)	296, 360
BstMBI	GATC	2 cut(s)	105, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	571
BstSLI	GKGCMC	1 cut(s)	127
BstUI	CGCG	1 cut(s)	113
BsuRI	GGCC	3 cut(s)	477, 565, 581
BtgZI	GCGATG	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	70, 94
BtsIMutI	CAGTG	2 cut(s)	457, 596
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	475, 508
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	9 cut(s)	119, 169, 176, 295, 345, 467, 477, 565, 581
CviKI_1	RGCY	9 cut(s)	119, 169, 176, 295, 345, 467, 477, 565, 581
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	2 cut(s)	177, 588
DpnI	GATC	2 cut(s)	107, 356
DpnII	GATC	2 cut(s)	105, 354
EaeI	YGGCCR	1 cut(s)	563
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	508
Eco57I	CTGAAG	2 cut(s)	155, 572
Eco72I	CACGTG	2 cut(s)	437, 569
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	121
FaeI	CATG	1 cut(s)	59
FaiI	YATR	9 cut(s)	6, 57, 281, 298, 398, 400, 451, 453, 543
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	1 cut(s)	55
FauI	CCCGC	1 cut(s)	106
FauNDI	CATATG	1 cut(s)	451
FokI	GGATG	2 cut(s)	77, 101
FriOI	GRGCYC	1 cut(s)	121
GlaI	GCGC	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	477, 565, 581
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	3 cut(s)	139, 276, 533
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	412, 457
Hpy188I	TCNGA	3 cut(s)	88, 266, 552
Hpy188III	TCNNGA	2 cut(s)	103, 160
Hpy8I	GTNNAC	2 cut(s)	412, 457
HpyAV	CCTTC	2 cut(s)	23, 54
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	2 cut(s)	436, 568
HpyCH4V	TGCA	2 cut(s)	380, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	571
HpyF3I	CTNAG	2 cut(s)	177, 588
HpySE526I	ACGT	2 cut(s)	436, 568
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	105, 354
LpnPI	CCDG	9 cut(s)	55, 140, 145, 158, 172, 335, 376, 453, 543
LweI	GCATC	3 cut(s)	79, 84, 440
MaeII	ACGT	2 cut(s)	436, 568
MalI	GATC	2 cut(s)	107, 356
MboI	GATC	2 cut(s)	105, 354
MboII	GAAGA	1 cut(s)	50
MhlI	GDGCHC	2 cut(s)	121, 127
MluCI	AATT	1 cut(s)	558
MlyI	GAGTC	2 cut(s)	133, 285
MmeI	TCCRAC	3 cut(s)	66, 244, 338
MnlI	CCTC	4 cut(s)	4, 253, 258, 592
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	2 cut(s)	288, 420
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	571
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	2 cut(s)	105, 354
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	3 cut(s)	228, 312, 476
NsiI	ATGCAT	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	533
PleI	GAGTC	2 cut(s)	133, 284
PmaCI	CACGTG	2 cut(s)	437, 569
PmlI	CACGTG	2 cut(s)	437, 569
PpsI	GAGTC	2 cut(s)	133, 284
Ppu21I	YACGTR	2 cut(s)	437, 569
PshBI	ATTAAT	1 cut(s)	420
PspCI	CACGTG	2 cut(s)	437, 569
PspN4I	GGNNCC	3 cut(s)	228, 312, 476
PspPI	GGNCC	2 cut(s)	475, 508
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	288, 420
Sau3AI	GATC	2 cut(s)	105, 354
Sau96I	GGNCC	2 cut(s)	475, 508
SchI	GAGTC	2 cut(s)	133, 285
SduI	GDGCHC	2 cut(s)	121, 127
SfaNI	GCATC	3 cut(s)	79, 84, 440
SinI	GGWCC	1 cut(s)	508
Sse9I	AATT	1 cut(s)	558
SsiI	CCGC	2 cut(s)	113, 224
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	2 cut(s)	439, 571
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	558
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	2 cut(s)	288, 420
Tru9I	TTAA	2 cut(s)	288, 420
TscAI	CASTG	2 cut(s)	464, 596
TspDTI	ATGAA	3 cut(s)	406, 438, 558
TspRI	CASTG	2 cut(s)	464, 596
VpaK11BI	GGWCC	1 cut(s)	508
VspI	ATTAAT	1 cut(s)	420
XagI	CCTNNNNNAGG	1 cut(s)	257
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.