Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010404

Physical Location & Seq

Genomic Coordinates Forward (+)

20933696 .. 20936760

Gene Structure 3065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG226000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTATATTGAGGAGTTGAAAGGTGGGGAAGGTGGAGAAGAAGTGGATTTAGGGCATGGAAGGGGCATCGTGGGGTCGGATGCGAAACGGGTCTTGATCGGCGCGGGGGCTCGTGCCCTGTTTTACCCGACTCTGCTTTACAATGTCATCAGGAATAAGCTTCAGGCTGAGTTTCGCTGGTGGGATAAGGTCGATGAGTTTGTATTGTTAGGTGCAGTTCCATTCCCTACTGATGTGCCTCGCCTAAAGGAGATCGGAGTTCGTGGAGTCATCACACTTAATGAGCCATACGAGACTTTGGTTCCAACATCTCTTTATAAGTCCAATGGCATTAGCCATCTGGTGATCCCTACCAGAGACTACTGCTTTGCACCATCGCTGAATGATATATGTCGTGCTGTAAACTTCATTAATGAAAATGCATCAAGTGGGACGACAACATATGTTCACTGTAAAGCTGGACGGGGCCGTAGTACAACCATTGTTATCTGCTACTTGGTCCATCACAAGCAGATGACACCTGATTCTGCCTATGAATATCTGAAGTCAATTCGGTCACGTGTGCTTTTGGCCTCTGCTCAGTGGCAGGTAACTTGTATGATTTATGTTCTCACAGTCTGGGCATGTTCTTCCTGCTTTTGGTGTTTGGAACATGGAATTTTTGTTTTCATTTTTTCCCTTTGTGGCAATGCCTGTCTTCTATTTTATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

237

Amino Acids

26.6

Weight (kDa)

7.53

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	76 - 177	1.6e-14	Swiss Army Knife protein, DSP-PTPase phosphatase domain
Tc-R-P	PF22785	80 - 170	7.9e-14	Polymorphic toxin system, DSP-PTPase phosphatase
DSPc	PF00782	100 - 195	1e-17	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35680
fragaria_vesca	FvH4_5g19640
malus_domestica	MD04G1061500.v1.1 MD06G1055300.v1.1
prunus_persica	Prupe.5G063900_v2.0.a1
pyrus_communis	pycom04g05520 pycom06g04630
rosa_chinensis	RchiOBHm_Chr7g0204371
rosa_laevigata	RLG00000003469
rosa_multiflora	Rmu_co8379943.1_g000001 Rmu_co8450077.1_g000001 Rmu_sc0002918.1_g000007 Rmu_sc0012666.1_g000001 Rmu_sc0014168.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253190
rosa_rugosa	Rorug07G0082600
rosa_samantha	Rh7AG212900 Rh7BG211000 Rh7CG226000 Rh7DG220200
rosa_wichuraiana	Rw7G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
Acc36I	ACCTGC	1 cut(s)	577
AccII	CGCG	1 cut(s)	104
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	657
AcuI	CTGAAG	2 cut(s)	146, 563
AcvI	CACGTG	1 cut(s)	560
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	1 cut(s)	639
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	1 cut(s)	19
AluBI	AGCT	2 cut(s)	160, 458
AluI	AGCT	2 cut(s)	160, 458
Alw26I	GTCTC	2 cut(s)	287, 351
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	2 cut(s)	466, 570
ApoI	RAATTY	1 cut(s)	657
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AseI	ATTAAT	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	2 cut(s)	466, 499
AsuHPI	GGTGA	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	499
BaeGI	GKGCMC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	112
BauI	CACGAG	1 cut(s)	111
BbrPI	CACGTG	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	689
BccI	CCATC	3 cut(s)	345, 382, 510
BceAI	ACGGC	1 cut(s)	453
BcoDI	GTCTC	2 cut(s)	287, 351
BfuAI	ACCTGC	1 cut(s)	577
Bme18I	GGWCC	1 cut(s)	499
BmgT120I	GGNCC	2 cut(s)	466, 499
BmiI	GGNNCC	2 cut(s)	303, 467
BmsI	GCATC	3 cut(s)	70, 75, 431
BpiI	GAAGAC	1 cut(s)	689
BsaAI	YACGTR	1 cut(s)	560
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	639
Bse3DI	GCAATG	1 cut(s)	694
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	639
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	2 cut(s)	159, 593
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	118
BsgI	GTGCAG	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	468, 572
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	639
BsmAI	GTCTC	2 cut(s)	287, 351
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	468, 572
Bsp1286I	GDGCHC	2 cut(s)	112, 118
Bsp143I	GATC	3 cut(s)	96, 252, 345
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	468, 572
BspCNI	CTCAG	2 cut(s)	160, 592
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	2 cut(s)	303, 467
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	694
BssMI	GATC	3 cut(s)	96, 252, 345
BssSI	CACGAG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	452, 616
BstBAI	YACGTR	1 cut(s)	560
BstDEI	CTNAG	2 cut(s)	168, 579
BstF5I	GGATG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	3 cut(s)	99, 255, 348
BstMAI	GTCTC	2 cut(s)	287, 351
BstMBI	GATC	3 cut(s)	96, 252, 345
BstNSI	RCATGY	1 cut(s)	627
BstSLI	GKGCMC	1 cut(s)	118
BstUI	CGCG	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	689
BsuRI	GGCC	2 cut(s)	468, 572
BtgZI	GCGATG	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	2 cut(s)	448, 587
BveI	ACCTGC	1 cut(s)	577
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	466, 499
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	3 cut(s)	56, 624, 653
CviJI	RGCY	8 cut(s)	110, 160, 167, 286, 336, 458, 468, 572
CviKI_1	RGCY	8 cut(s)	110, 160, 167, 286, 336, 458, 468, 572
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	2 cut(s)	168, 579
DpnI	GATC	3 cut(s)	98, 254, 347
DpnII	GATC	3 cut(s)	96, 252, 345
Eco24I	GRGCYC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	499
Eco57I	CTGAAG	2 cut(s)	146, 563
Eco72I	CACGTG	1 cut(s)	560
EcoT22I	ATGCAT	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	112
FaeI	CATG	3 cut(s)	59, 627, 656
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	3 cut(s)	55, 623, 652
FauI	CCCGC	1 cut(s)	97
FauNDI	CATATG	1 cut(s)	442
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	112
GlaI	GCGC	1 cut(s)	103
HaeIII	GGCC	2 cut(s)	468, 572
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	3 cut(s)	59, 627, 656
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	3 cut(s)	130, 267, 524
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	403, 448
Hpy188I	TCNGA	3 cut(s)	79, 257, 543
Hpy188III	TCNNGA	2 cut(s)	94, 151
Hpy8I	GTNNAC	2 cut(s)	403, 448
HpyAV	CCTTC	2 cut(s)	23, 54
HpyCH4III	ACNGT	2 cut(s)	452, 616
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	3 cut(s)	215, 371, 422
HpyF3I	CTNAG	2 cut(s)	168, 579
HpySE526I	ACGT	1 cut(s)	559
Hsp92II	CATG	3 cut(s)	59, 627, 656
HspAI	GCGC	1 cut(s)	102
Kzo9I	GATC	3 cut(s)	96, 252, 345
LweI	GCATC	3 cut(s)	70, 75, 431
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	2 cut(s)	555, 589
MalI	GATC	3 cut(s)	98, 254, 347
MboI	GATC	3 cut(s)	96, 252, 345
MboII	GAAGA	3 cut(s)	50, 621, 689
MhlI	GDGCHC	2 cut(s)	112, 118
MluCI	AATT	2 cut(s)	549, 657
MlyI	GAGTC	2 cut(s)	124, 276
MmeI	TCCRAC	2 cut(s)	57, 329
MnlI	CCTC	3 cut(s)	4, 249, 583
Mph1103I	ATGCAT	1 cut(s)	424
MseI	TTAA	3 cut(s)	279, 411, 712
MvnI	CGCG	1 cut(s)	104
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	3 cut(s)	96, 252, 345
NlaIII	CATG	3 cut(s)	59, 627, 656
NlaIV	GGNNCC	2 cut(s)	303, 467
NmuCI	GTSAC	1 cut(s)	555
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	524
PleI	GAGTC	2 cut(s)	124, 275
PmaCI	CACGTG	1 cut(s)	560
PmlI	CACGTG	1 cut(s)	560
PpsI	GAGTC	2 cut(s)	124, 275
Ppu21I	YACGTR	1 cut(s)	560
PshBI	ATTAAT	1 cut(s)	411
PsiI	TTATAA	1 cut(s)	318
PspCI	CACGTG	1 cut(s)	560
PspN4I	GGNNCC	2 cut(s)	303, 467
PspPI	GGNCC	2 cut(s)	466, 499
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	279, 411, 712
Sau3AI	GATC	3 cut(s)	96, 252, 345
Sau96I	GGNCC	2 cut(s)	466, 499
SchI	GAGTC	2 cut(s)	124, 276
SduI	GDGCHC	2 cut(s)	112, 118
SetI	ASST	9 cut(s)	25, 34, 162, 192, 214, 460, 523, 562, 591
SfaNI	GCATC	3 cut(s)	70, 75, 431
SinI	GGWCC	1 cut(s)	499
Sse9I	AATT	2 cut(s)	549, 657
SsiI	CCGC	1 cut(s)	104
TaaI	ACNGT	2 cut(s)	452, 616
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	1 cut(s)	192
TaqII	GACCGA	1 cut(s)	543
TasI	AATT	2 cut(s)	549, 657
TatI	WGTACW	1 cut(s)	473
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	3 cut(s)	279, 411, 712
Tru9I	TTAA	3 cut(s)	279, 411, 712
TscAI	CASTG	2 cut(s)	455, 587
TseFI	GTSAC	1 cut(s)	555
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	4 cut(s)	397, 429, 549, 658
TspRI	CASTG	2 cut(s)	455, 587
VpaK11BI	GGWCC	1 cut(s)	499
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	1 cut(s)	657
XceI	RCATGY	1 cut(s)	627
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.