Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010404

Physical Location & Seq

Genomic Coordinates Forward (+)

8303846 .. 8307560

Gene Structure 3715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1055300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTATATTGAGGAACTGAAGGGAGGAGAAGTTGCAAGTGGGGAAAAAGGGAATTTGTCCCTTGGAAATAGAGATTTTGATAGCAGGAGCATCACACGGTCCGATGCGAAGCGGGTTTTGATCGGTGCAGGAGCTCGTGCGCTGTTTTACCCGACTCTGCTTTACAATGTCATTAGGAATAAGCTTCAGGCTGAGTTTCGGTGGTGGGATAAGGTTGATGAGTTTGTATTGTTAGGTGCAGTTCCATTCCCTACTGACGTACCTCGCTTAAAGGATGTCGGAGTTGGTGGAGTCATAACACTTAATGAGCCATACGAGACTTTGGTTCCAACATCTCTTTATCATTCTCATGGCATTAACCATCTGGTGATTCCTACAAGAGACTACTGCTTTGCACCATCACTTGATGATGCATGTCGTGCTGTAGACTTCATTCATGAAAATGCATTAAGTGGACAGACAACATATGTTCACTGTAAAGCTGGACGGGGGCGTAGTACGACCATTGTTATCTGTTACCTGGTCCATCACAAGCAGATGACACCTGAATCTGCTTATGAATATCTAAAGTCAATTCGGCCGAGGGTGCTTTTAGCCTCTGCTCAGTGGCAGGCTGTCCAGGACTACTACTATTTAATGGTGAAGAAAGCTTTTGTTTACAGTCACATGCCAGATCTGATGATGACACCGCTTCAGTCTGCTTCCTCACACAATCTAGTTGCATTTGATGAAGGCTCTGTGGTAGTGGTAGCAGAATCAGATCTTGAAGGATATGATGCGAGTTTCCAGTCTGGCACCGTGGGAAGTGAGATTTGGGCGGACTTAAGTGTGGTTTATCGGGTGCGAGTAGCCGGTCAGGCAGCTCTTGCAAGAATCTCATGTATGTGGCTCCGCTTCGGTGCCCACCAGAAGATGTCAGGAGAGAATTCGGGCAGGAGGGCTGATCGTCTGAGCGGCATTAGTGTGGATATACAAGTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

328

Amino Acids

36.43

Weight (kDa)

6.55

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	85 - 185	7.2e-12	Swiss Army Knife protein, DSP-PTPase phosphatase domain
Tc-R-P	PF22785	89 - 178	1.9e-12	Polymorphic toxin system, DSP-PTPase phosphatase
DSPc	PF00782	112 - 209	1.5e-16	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35680
fragaria_vesca	FvH4_5g19640
malus_domestica	MD04G1061500.v1.1 MD06G1055300.v1.1
prunus_persica	Prupe.5G063900_v2.0.a1
pyrus_communis	pycom04g05520 pycom06g04630
rosa_chinensis	RchiOBHm_Chr7g0204371
rosa_laevigata	RLG00000003469
rosa_multiflora	Rmu_co8379943.1_g000001 Rmu_co8450077.1_g000001 Rmu_sc0002918.1_g000007 Rmu_sc0012666.1_g000001 Rmu_sc0014168.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253190
rosa_rugosa	Rorug07G0082600
rosa_samantha	Rh7AG212900 Rh7BG211000 Rh7CG226000 Rh7DG220200
rosa_wichuraiana	Rw7G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	794, 899
AccBSI	CCGCTC	1 cut(s)	954
AccI	GTMKAC	2 cut(s)	426, 978
AciI	CCGC	5 cut(s)	112, 689, 818, 892, 954
AcoI	YGGCCR	1 cut(s)	578
AcsI	RAATTY	2 cut(s)	52, 925
AcuI	CTGAAG	3 cut(s)	38, 170, 677
AfaI	GTAC	2 cut(s)	261, 499
AflII	CTTAAG	1 cut(s)	823
AgsI	TTSAA	1 cut(s)	767
AjnI	CCWGG	2 cut(s)	519, 618
AjuI	GAANNNNNNNTTGG	2 cut(s)	796, 828
AluBI	AGCT	5 cut(s)	134, 184, 482, 650, 863
AluI	AGCT	5 cut(s)	134, 184, 482, 650, 863
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	311, 375
AoxI	GGCC	1 cut(s)	578
ApeKI	GCWGC	1 cut(s)	860
ApoI	RAATTY	2 cut(s)	52, 925
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	2 cut(s)	99, 523
AsuHPI	GGTGA	2 cut(s)	379, 652
AvaII	GGWCC	2 cut(s)	99, 523
BaeGI	GKGCMC	1 cut(s)	904
BaeI	ACNNNNGTAYC	2 cut(s)	243, 276
BanI	GGYRCC	2 cut(s)	794, 899
BanII	GRGCYC	1 cut(s)	136
BauI	CACGAG	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	872
BccI	CCATC	3 cut(s)	369, 406, 534
BciT130I	CCWGG	2 cut(s)	521, 620
BcoDI	GTCTC	2 cut(s)	311, 375
BfaI	CTAG	1 cut(s)	716
BfmI	CTRYAG	1 cut(s)	423
BfrI	CTTAAG	1 cut(s)	823
BglI	GCCNNNNNGGC	1 cut(s)	857
BglII	AGATCT	2 cut(s)	673, 760
BisI	GCNGC	2 cut(s)	861, 955
BlsI	GCNGC	2 cut(s)	862, 956
Bme1390I	CCNGG	2 cut(s)	521, 620
Bme18I	GGWCC	2 cut(s)	99, 523
BmgT120I	GGNCC	2 cut(s)	99, 523
BmiI	GGNNCC	4 cut(s)	327, 796, 890, 901
BmrFI	CCNGG	2 cut(s)	521, 620
BmsI	GCATC	4 cut(s)	94, 99, 400, 766
BsaJI	CCNNGG	3 cut(s)	61, 581, 798
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse118I	RCCGGY	1 cut(s)	851
Bse1I	ACTGG	1 cut(s)	787
BseBI	CCWGG	2 cut(s)	521, 620
BseDI	CCNNGG	3 cut(s)	61, 581, 798
BseGI	GGATG	1 cut(s)	280
BseMII	CTCAG	3 cut(s)	183, 617, 941
BseNI	ACTGG	1 cut(s)	787
BseRI	GAGGAG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	904
BseX3I	CGGCCG	1 cut(s)	578
BseXI	GCAGC	1 cut(s)	872
BsgI	GTGCAG	2 cut(s)	147, 258
Bsh1285I	CGRYCG	1 cut(s)	581
BshFI	GGCC	1 cut(s)	580
BshNI	GGYRCC	2 cut(s)	794, 899
BsiEI	CGRYCG	1 cut(s)	581
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	852
BslFI	GGGAC	1 cut(s)	43
BsmAI	GTCTC	2 cut(s)	311, 375
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	580
Bsp1286I	GDGCHC	2 cut(s)	136, 904
Bsp143I	GATC	4 cut(s)	120, 673, 760, 943
BspACI	CCGC	5 cut(s)	112, 689, 818, 892, 954
BspANI	GGCC	1 cut(s)	580
BspCNI	CTCAG	3 cut(s)	184, 616, 942
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	4 cut(s)	327, 796, 890, 901
BspT107I	GGYRCC	2 cut(s)	794, 899
BspTI	CTTAAG	1 cut(s)	823
BsrBI	CCGCTC	1 cut(s)	954
BsrFI	RCCGGY	1 cut(s)	851
BsrI	ACTGG	1 cut(s)	787
BssAI	RCCGGY	1 cut(s)	851
BssECI	CCNNGG	3 cut(s)	61, 581, 798
BssMI	GATC	4 cut(s)	120, 673, 760, 943
BssSI	CACGAG	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	521, 620
Bst4CI	ACNGT	4 cut(s)	99, 476, 662, 799
BstAFI	CTTAAG	1 cut(s)	823
BstAPI	GCANNNNNTGC	2 cut(s)	419, 866
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	3 cut(s)	192, 603, 950
BstDSI	CCRYGG	1 cut(s)	798
BstF5I	GGATG	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	4 cut(s)	123, 676, 763, 946
BstMAI	GTCTC	2 cut(s)	311, 375
BstMBI	GATC	4 cut(s)	120, 673, 760, 943
BstMCI	CGRYCG	1 cut(s)	581
BstMWI	GCNNNNNNNGC	4 cut(s)	419, 586, 857, 866
BstNI	CCWGG	2 cut(s)	521, 620
BstNSI	RCATGY	2 cut(s)	417, 670
BstSCI	CCNGG	2 cut(s)	519, 618
BstSFI	CTRYAG	1 cut(s)	423
BstSLI	GKGCMC	1 cut(s)	904
BstV1I	GCAGC	1 cut(s)	872
BstX2I	RGATCY	2 cut(s)	673, 760
BstYI	RGATCY	2 cut(s)	673, 760
BstZI	CGGCCG	1 cut(s)	578
BsuRI	GGCC	1 cut(s)	580
BtgI	CCRYGG	1 cut(s)	798
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	472, 611
Cac8I	GCNNGC	1 cut(s)	612
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	1 cut(s)	142
Cfr10I	RCCGGY	1 cut(s)	851
Cfr13I	GGNCC	2 cut(s)	99, 523
CpoI	CGGWCCG	1 cut(s)	99
CsiI	ACCWGGT	1 cut(s)	519
Csp6I	GTAC	2 cut(s)	260, 498
CspI	CGGWCCG	1 cut(s)	99
CviAII	CATG	5 cut(s)	350, 414, 437, 667, 879
CviQI	GTAC	2 cut(s)	260, 498
DdeI	CTNAG	3 cut(s)	192, 603, 950
DpnI	GATC	4 cut(s)	122, 675, 762, 945
DpnII	GATC	4 cut(s)	120, 673, 760, 943
EaeI	YGGCCR	1 cut(s)	578
EagI	CGGCCG	1 cut(s)	578
EciI	GGCGGA	1 cut(s)	833
Ecl136II	GAGCTC	1 cut(s)	134
EclXI	CGGCCG	1 cut(s)	578
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	99, 523
Eco52I	CGGCCG	1 cut(s)	578
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	3 cut(s)	38, 170, 677
EcoICRI	GAGCTC	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	925
EcoRII	CCWGG	2 cut(s)	519, 618
EcoT14I	CCWWGG	1 cut(s)	61
EcoT22I	ATGCAT	2 cut(s)	415, 448
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	5 cut(s)	353, 417, 440, 670, 882
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	5 cut(s)	349, 413, 436, 666, 878
FauI	CCCGC	1 cut(s)	105
FauNDI	CATATG	1 cut(s)	466
FblI	GTMKAC	2 cut(s)	426, 978
Fnu4HI	GCNGC	2 cut(s)	861, 955
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	2 cut(s)	861, 955
FspBI	CTAG	1 cut(s)	716
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	2 cut(s)	861, 955
HaeIII	GGCC	1 cut(s)	580
HapII	CCGG	1 cut(s)	852
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	5 cut(s)	353, 417, 440, 670, 882
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HindIII	AAGCTT	2 cut(s)	182, 648
HinfI	GANTC	6 cut(s)	154, 291, 370, 548, 755, 873
HpaII	CCGG	1 cut(s)	852
HphI	GGTGA	2 cut(s)	379, 652
Hpy166II	GTNNAC	5 cut(s)	427, 455, 472, 658, 979
Hpy188I	TCNGA	5 cut(s)	103, 281, 678, 760, 951
Hpy188III	TCNNGA	3 cut(s)	437, 764, 918
Hpy8I	GTNNAC	5 cut(s)	427, 455, 472, 658, 979
HpyAV	CCTTC	3 cut(s)	13, 725, 761
HpyCH4III	ACNGT	4 cut(s)	99, 476, 662, 799
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	8 cut(s)	35, 128, 239, 395, 413, 446, 722, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	419, 586, 857, 866
HpyF3I	CTNAG	3 cut(s)	192, 603, 950
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	5 cut(s)	353, 417, 440, 670, 882
HspAI	GCGC	1 cut(s)	140
Kzo9I	GATC	4 cut(s)	120, 673, 760, 943
LmnI	GCTCC	3 cut(s)	87, 131, 894
Lsp1109I	GCAGC	1 cut(s)	872
LweI	GCATC	4 cut(s)	94, 99, 400, 766
MabI	ACCWGGT	1 cut(s)	519
MaeI	CTAG	1 cut(s)	716
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	515, 662
MalI	GATC	4 cut(s)	122, 675, 762, 945
MbiI	CCGCTC	1 cut(s)	954
MboI	GATC	4 cut(s)	120, 673, 760, 943
MboII	GAAGA	2 cut(s)	655, 922
MflI	RGATCY	2 cut(s)	673, 760
MhlI	GDGCHC	2 cut(s)	136, 904
MluCI	AATT	3 cut(s)	52, 573, 925
MlyI	GAGTC	2 cut(s)	148, 300
MmeI	TCCRAC	2 cut(s)	259, 353
MnlI	CCTC	7 cut(s)	4, 17, 273, 576, 607, 715, 930
Mph1103I	ATGCAT	2 cut(s)	415, 448
MseI	TTAA	6 cut(s)	269, 303, 357, 449, 635, 824
MslI	CAYNNNNRTG	4 cut(s)	348, 441, 883, 962
MspCI	CTTAAG	1 cut(s)	823
MspI	CCGG	1 cut(s)	852
MspR9I	CCNGG	2 cut(s)	521, 620
MvaI	CCWGG	2 cut(s)	521, 620
MwoI	GCNNNNNNNGC	4 cut(s)	419, 586, 857, 866
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	4 cut(s)	120, 673, 760, 943
NlaIII	CATG	5 cut(s)	353, 417, 440, 670, 882
NlaIV	GGNNCC	4 cut(s)	327, 796, 890, 901
NmeAIII	GCCGAG	1 cut(s)	606
NmuCI	GTSAC	1 cut(s)	662
NsiI	ATGCAT	2 cut(s)	415, 448
NspI	RCATGY	2 cut(s)	417, 670
PagI	TCATGA	1 cut(s)	436
PfeI	GAWTC	4 cut(s)	370, 548, 755, 873
PfoI	TCCNGGA	1 cut(s)	618
PkrI	GCNGC	2 cut(s)	862, 956
PleI	GAGTC	2 cut(s)	148, 299
PpsI	GAGTC	2 cut(s)	148, 299
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	519, 618
PspGI	CCWGG	2 cut(s)	519, 618
PspN4I	GGNNCC	4 cut(s)	327, 796, 890, 901
PspPI	GGNCC	2 cut(s)	99, 523
PsuI	RGATCY	2 cut(s)	673, 760
RsaI	GTAC	2 cut(s)	261, 499
RsaNI	GTAC	2 cut(s)	260, 498
RseI	CAYNNNNRTG	4 cut(s)	348, 441, 883, 962
Rsr2I	CGGWCCG	1 cut(s)	99
RsrII	CGGWCCG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	6 cut(s)	269, 303, 357, 449, 635, 824
SatI	GCNGC	2 cut(s)	861, 955
Sau3AI	GATC	4 cut(s)	120, 673, 760, 943
Sau96I	GGNCC	2 cut(s)	99, 523
SchI	GAGTC	2 cut(s)	148, 300
ScrFI	CCNGG	2 cut(s)	521, 620
SduI	GDGCHC	2 cut(s)	136, 904
SexAI	ACCWGGT	1 cut(s)	519
SfaNI	GCATC	4 cut(s)	94, 99, 400, 766
SfcI	CTRYAG	1 cut(s)	423
SinI	GGWCC	2 cut(s)	99, 523
SmiMI	CAYNNNNRTG	4 cut(s)	348, 441, 883, 962
SmlI	CTYRAG	1 cut(s)	823
SmoI	CTYRAG	1 cut(s)	823
Sse9I	AATT	3 cut(s)	52, 573, 925
SsiI	CCGC	5 cut(s)	112, 689, 818, 892, 954
SspMI	CTAG	1 cut(s)	716
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	2 cut(s)	519, 618
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	4 cut(s)	99, 476, 662, 799
TaiI	ACGT	1 cut(s)	261
TasI	AATT	3 cut(s)	52, 573, 925
TauI	GCSGC	1 cut(s)	957
TfiI	GAWTC	4 cut(s)	370, 548, 755, 873
Tru1I	TTAA	6 cut(s)	269, 303, 357, 449, 635, 824
Tru9I	TTAA	6 cut(s)	269, 303, 357, 449, 635, 824
TscAI	CASTG	2 cut(s)	479, 611
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	1 cut(s)	860
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	5 cut(s)	421, 425, 453, 573, 744
TspRI	CASTG	2 cut(s)	479, 611
Vha464I	CTTAAG	1 cut(s)	823
VpaK11BI	GGWCC	2 cut(s)	99, 523
XapI	RAATTY	2 cut(s)	52, 925
XceI	RCATGY	2 cut(s)	417, 670
XmiI	GTMKAC	2 cut(s)	426, 978
XspI	CTAG	1 cut(s)	716
Zsp2I	ATGCAT	2 cut(s)	415, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.