Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002918.1

Orthogroup ID

OG0010404

Physical Location & Seq

Genomic Coordinates Reverse (-)

53382 .. 53777

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002918.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgcaggctgttcaggagtactactatttcatggtgaagaaagctgtggtttacagccacttgactaatctaatattgaatcccccatgttcagctccctcacatgatctccttgcatttgacgagggctctgtagtagtggtcactgaatcagatcttgaaggatatgatgcaaatctccagtctggtactgttggaaatgagatatgggctgacttgagtgtggtctatcgggttcgagtagctggtcaggcagctctcacaaggatttcatgcctgtggctccgttgccatgcccaccaggagagttcagctaagaagttgggcagggaaagcagctgctcgattacagctgatcatctgggaggcattagcgtggacatacaagtttactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

131

Amino Acids

14.38

Weight (kDa)

5.39

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35680
fragaria_vesca	FvH4_5g19640
malus_domestica	MD04G1061500.v1.1 MD06G1055300.v1.1
prunus_persica	Prupe.5G063900_v2.0.a1
pyrus_communis	pycom04g05520 pycom06g04630
rosa_chinensis	RchiOBHm_Chr7g0204371
rosa_laevigata	RLG00000003469
rosa_multiflora	Rmu_co8379943.1_g000001 Rmu_co8450077.1_g000001 Rmu_sc0002918.1_g000007 Rmu_sc0012666.1_g000001 Rmu_sc0014168.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253190
rosa_rugosa	Rorug07G0082600
rosa_samantha	Rh7AG212900 Rh7BG211000 Rh7CG226000 Rh7DG220200
rosa_wichuraiana	Rw7G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	20, 190
AgsI	TTSAA	2 cut(s)	79, 161
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	7 cut(s)	44, 95, 245, 257, 314, 339, 353
AluI	AGCT	7 cut(s)	44, 95, 245, 257, 314, 339, 353
ApeKI	GCWGC	3 cut(s)	254, 336, 339
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AsuHPI	GGTGA	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	131
BbvI	GCAGC	3 cut(s)	266, 326, 348
BciT130I	CCWGG	1 cut(s)	302
BclI	TGATCA	1 cut(s)	355
BfmI	CTRYAG	1 cut(s)	132
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	3 cut(s)	255, 337, 340
BlsI	GCNGC	3 cut(s)	256, 338, 341
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bse1I	ACTGG	1 cut(s)	181
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	302
BseJI	GATNNNNATC	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	181
BseXI	GCAGC	3 cut(s)	266, 326, 348
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	3 cut(s)	106, 154, 355
BspLI	GGNNCC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	181
BssMI	GATC	3 cut(s)	106, 154, 355
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	315
BstKTI	GATC	3 cut(s)	109, 157, 358
BstMBI	GATC	3 cut(s)	106, 154, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 333
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	300
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	3 cut(s)	266, 326, 348
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	19, 189
CviAII	CATG	5 cut(s)	31, 87, 104, 273, 293
CviQI	GTAC	2 cut(s)	19, 189
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	3 cut(s)	108, 156, 357
DpnII	GATC	3 cut(s)	106, 154, 355
Eco24I	GRGCYC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	5 cut(s)	34, 90, 107, 276, 296
FaiI	YATR	8 cut(s)	32, 88, 105, 168, 208, 274, 294, 383
FatI	CATG	5 cut(s)	30, 86, 103, 272, 292
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	255, 337, 340
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	3 cut(s)	255, 337, 340
GluI	GCNGC	3 cut(s)	255, 337, 340
GsuI	CTGGAG	1 cut(s)	164
Hin1II	CATG	5 cut(s)	34, 90, 107, 276, 296
HinfI	GANTC	2 cut(s)	79, 149
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	3 cut(s)	52, 379, 391
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	2 cut(s)	14, 158
Hpy8I	GTNNAC	3 cut(s)	52, 379, 391
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	4, 116, 173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 333
HpyF3I	CTNAG	1 cut(s)	315
Hsp92II	CATG	5 cut(s)	34, 90, 107, 276, 296
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	106, 154, 355
LmnI	GCTCC	2 cut(s)	100, 288
LpnPI	CCDG	9 cut(s)	171, 194, 231, 236, 287, 290, 313, 314, 347
Lsp1109I	GCAGC	3 cut(s)	266, 326, 348
LweI	GCATC	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	108, 156, 357
MboI	GATC	3 cut(s)	106, 154, 355
MboII	GAAGA	1 cut(s)	49
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	3 cut(s)	109, 118, 359
MslI	CAYNNNNRTG	2 cut(s)	277, 374
MspA1I	CMGCKG	2 cut(s)	339, 353
MspR9I	CCNGG	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	2 cut(s)	251, 333
NdeII	GATC	3 cut(s)	106, 154, 355
NlaIII	CATG	5 cut(s)	34, 90, 107, 276, 296
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	79, 149
PkrI	GCNGC	3 cut(s)	256, 338, 341
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	154
PvuII	CAGCTG	2 cut(s)	339, 353
RsaI	GTAC	2 cut(s)	20, 190
RsaNI	GTAC	2 cut(s)	19, 189
RseI	CAYNNNNRTG	2 cut(s)	277, 374
SatI	GCNGC	3 cut(s)	255, 337, 340
Sau3AI	GATC	3 cut(s)	106, 154, 355
ScaI	AGTACT	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	7 cut(s)	46, 97, 247, 259, 316, 341, 355
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	2 cut(s)	277, 374
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
SspI	AATATT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	2 cut(s)	238, 344
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	79, 149
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	3 cut(s)	254, 336, 339
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	19, 261
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	1 cut(s)	151
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.