Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8450077.1

Orthogroup ID

OG0010404

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 623

Gene Structure 623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8450077.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

gctgttcaggagtactactatttcatggtgaagaaagctgtggtttacagccacttgactaatctaatattgaatcccccatgttcagctccctcacatgatctccttgcatttgacgagggctctgtagtagtggtcactgaatcagatcttgaaggatatgatgcaaatctccagtctggtactgttggaaatgagatatgggctgacttgagtgtggtctatcgggttcgagtagctggtcaggcagctctcacaaggatttcatgcctgtggctccgttgccatgcccaccaggagagttcagctaagaagttgggcagggaaagcagctgctcgattacagctgatcatctgggaggcattagcgtggacatacaagtttactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

129

Amino Acids

14.12

Weight (kDa)

5.39

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35680
fragaria_vesca	FvH4_5g19640
malus_domestica	MD04G1061500.v1.1 MD06G1055300.v1.1
prunus_persica	Prupe.5G063900_v2.0.a1
pyrus_communis	pycom04g05520 pycom06g04630
rosa_chinensis	RchiOBHm_Chr7g0204371
rosa_laevigata	RLG00000003469
rosa_multiflora	Rmu_co8379943.1_g000001 Rmu_co8450077.1_g000001 Rmu_sc0002918.1_g000007 Rmu_sc0012666.1_g000001 Rmu_sc0014168.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253190
rosa_rugosa	Rorug07G0082600
rosa_samantha	Rh7AG212900 Rh7BG211000 Rh7CG226000 Rh7DG220200
rosa_wichuraiana	Rw7G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	14, 184
AgsI	TTSAA	2 cut(s)	73, 155
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	7 cut(s)	38, 89, 239, 251, 308, 333, 347
AluI	AGCT	7 cut(s)	38, 89, 239, 251, 308, 333, 347
ApeKI	GCWGC	3 cut(s)	248, 330, 333
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AsuHPI	GGTGA	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	125
BbvI	GCAGC	3 cut(s)	260, 320, 342
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	1 cut(s)	349
BfmI	CTRYAG	1 cut(s)	126
BglII	AGATCT	1 cut(s)	148
BisI	GCNGC	3 cut(s)	249, 331, 334
BlsI	GCNGC	3 cut(s)	250, 332, 335
BmcAI	AGTACT	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	168
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bse1I	ACTGG	1 cut(s)	175
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	296
BseJI	GATNNNNATC	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	175
BseXI	GCAGC	3 cut(s)	260, 320, 342
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	100, 148, 349
BspLI	GGNNCC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	175
BssMI	GATC	3 cut(s)	100, 148, 349
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	309
BstKTI	GATC	3 cut(s)	103, 151, 352
BstMBI	GATC	3 cut(s)	100, 148, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 327
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	3 cut(s)	260, 320, 342
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	13, 183
CviAII	CATG	5 cut(s)	25, 81, 98, 267, 287
CviQI	GTAC	2 cut(s)	13, 183
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	3 cut(s)	102, 150, 351
DpnII	GATC	3 cut(s)	100, 148, 349
Eco24I	GRGCYC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	125
FaeI	CATG	5 cut(s)	28, 84, 101, 270, 290
FaiI	YATR	8 cut(s)	26, 82, 99, 162, 202, 268, 288, 377
FatI	CATG	5 cut(s)	24, 80, 97, 266, 286
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	249, 331, 334
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	3 cut(s)	249, 331, 334
GluI	GCNGC	3 cut(s)	249, 331, 334
GsuI	CTGGAG	1 cut(s)	158
Hin1II	CATG	5 cut(s)	28, 84, 101, 270, 290
HinfI	GANTC	2 cut(s)	73, 143
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	3 cut(s)	46, 373, 385
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	8, 152
Hpy8I	GTNNAC	3 cut(s)	46, 373, 385
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	110, 167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 327
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	5 cut(s)	28, 84, 101, 270, 290
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	100, 148, 349
LmnI	GCTCC	2 cut(s)	94, 282
LpnPI	CCDG	9 cut(s)	165, 188, 225, 230, 281, 284, 307, 308, 341
Lsp1109I	GCAGC	3 cut(s)	260, 320, 342
LweI	GCATC	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	3 cut(s)	102, 150, 351
MboI	GATC	3 cut(s)	100, 148, 349
MboII	GAAGA	1 cut(s)	43
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	3 cut(s)	103, 112, 353
MslI	CAYNNNNRTG	2 cut(s)	271, 368
MspA1I	CMGCKG	2 cut(s)	333, 347
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	245, 327
NdeII	GATC	3 cut(s)	100, 148, 349
NlaIII	CATG	5 cut(s)	28, 84, 101, 270, 290
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	73, 143
PkrI	GCNGC	3 cut(s)	250, 332, 335
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	148
PvuII	CAGCTG	2 cut(s)	333, 347
RsaI	GTAC	2 cut(s)	14, 184
RsaNI	GTAC	2 cut(s)	13, 183
RseI	CAYNNNNRTG	2 cut(s)	271, 368
SatI	GCNGC	3 cut(s)	249, 331, 334
Sau3AI	GATC	3 cut(s)	100, 148, 349
ScaI	AGTACT	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	7 cut(s)	40, 91, 241, 253, 310, 335, 349
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	1 cut(s)	126
SmiMI	CAYNNNNRTG	2 cut(s)	271, 368
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
SspI	AATATT	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	2 cut(s)	232, 338
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	73, 143
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	3 cut(s)	248, 330, 333
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	13, 255
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	145
ZrmI	AGTACT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.