AT2G36360

Kelch motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002311
Physical Location & Seq
Reverse (-)
15242904 .. 15247695
4792 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36360.2

Sequence Viewer

Length: 1491 bp
ATGCATCACTGGGTTCAAGCTTCTTCTTCCGATTTCAGTGGAACTCCTCCGCAAGCTCGGAGTGGACATACAGCTGTCAATGTCGGAAAATCCATGGTGGTGGTGTTCGGTGGTCTCGTCGATAAGAAATTCCTCAGCGATATAATTGTTTATGATATTGAAAACAAACTCTGGTTTGAGCCAGAATGTACTGGCAGCGAGTCTGAAGGACAAGTGGGTCCTACACCTCGTGCGTTTCATGTTGCTATTACAATCGATTGTCATATGTTCATCTTTGGTGGACGTTCTGGTGGCAAGAGGTTGGGTGACTTCTGGGTTCTAGATACAGATATATGGCAGTGGTCTGAATTGACTAGCTTCGGCGACTTACCTACACCTCGTGATTTTGCTGCCGCTGCTGCTATTGGGAGCCAAAAAATTGTGTTGTGCGGCGGCTGGGACGGTAAAAAGTGGCTGTCAGATGTTTATGTTATGGACACAATGTCCCTTGAATGGCTGGAGCTATCGGTTTCAGGGTCATTGCCACCTCCTAGATGTGGTCATACGGCCACAATGGTGGAGAAACGATTACTTGTTTTCGGTGGCCGAGGAGGTGGTGGCCCAATCATGGGTGATTTGTGGGCTTTGAAGGGTCTGATAGATGAAGAGCGTGAAACACCTGGATGGACCCAACTCAAGCTTCCTGGACAAGCACCATCATCTCGATGTGGTCATACAGTTACATCTGGAGGACATTATCTTCTGTTATTTGGGGGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTGGACAGAGTAACTGCTCAGTGGAAGCGCTTACCAATAGGCAATGAGCCTCCTCCTCCTCGAGCTTACCATACCATGACTTGTATTGGAGCTCGTCATCTTTTAATTGGTGGTTTTGATGGAAAATTGACCTTCGGTGATCTCTGGTGGTTAGTTCCCGAAGATGATCCGATAGCCAAGAGGTCTTCTGTGCCTCAAGTTGTAAACCCTCCTGAAATTAAAGAGTCAGAGAGAGAGTTGGACAAGGAAAGGGGACAAGATGGATTCAGTATTGTTGACTTGCAACAGAAAATGGGAATATCTGTTTCATCAGGGTTGCGCCTTCAAATTCCCGAGGAGTCAGAAGATCAAGAGTTTGTTGAATTAGGAACAAGATTAATTGAGGGAGATGTAGTTGATGAACGGGCCTCTATGATTCAGATGGCCGCTCAAGCACTTCGTCAGCATTGGAAACAGTCCACTCCGAGAACTTTACAACTAAAAGAGCTTGGTTCCTTACTTCGAGATTATCAGCGACTTGTTACACGAATTTTCACTACACAGAGCAGCTTAACATCTGCTGATTTTGGCCTCCCTGGAACGAAGACCTTTACGTTTTATCATATCAAAAGTTCTTCCGAGTTGCGGATTAATGACATCTCGAAGTTGCTGGAAGAATACAAAACTCTTGTAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kelch_3 Kelch_4

Protein Analysis

496

Amino Acids

55.04

Weight (kDa)

5.68

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 8 - 195 2.4e-51 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 13 - 67 1.6e-08 FBX42, beta-propeller domain
Beta-prop_ATRN-LZTR1 PF24981 71 - 314 2.4e-22 Attractin/LZTR1 beta-propeller
Beta-prop_FBX42 PF13415 72 - 165 7.5e-19 FBX42, beta-propeller domain
Kelch_HCF PF13854 73 - 146 1.3e-08 Host cell factor, Kelch-repeats domain
Kelch_1 PF01344 76 - 120 2.3e-08 Kelch motif
Kelch_HCF PF13854 137 - 195 1.5e-06 Host cell factor, Kelch-repeats domain
Beta-prop_FBX42 PF13415 139 - 210 7.5e-14 FBX42, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 153 - 325 4.2e-35 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 222 - 322 3.8e-15 FBX42, beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 216
AccBSI CCGCTC 1 cut(s) 1241
AciI CCGC 6 cut(s) 50, 393, 429, 432, 1239, 1438
AclWI GGATC 1 cut(s) 974
AcoI YGGCCR 3 cut(s) 546, 583, 1236
AcsI RAATTY 3 cut(s) 128, 1140, 1341
AcuI CTGAAG 1 cut(s) 225
AdeI CACNNNGTG 2 cut(s) 230, 380
AfaI GTAC 1 cut(s) 190
AfeI AGCGCT 1 cut(s) 842
AfiI CCNNNNNNNGG 5 cut(s) 492, 536, 607, 608, 1437
AgsI TTSAA 6 cut(s) 17, 161, 491, 628, 1139, 1175
AhdI GACNNNNNGTC 1 cut(s) 481
AjnI CCWGG 3 cut(s) 658, 682, 1387
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AleI CACNNNNGTG 1 cut(s) 554
Alw21I GWGCWC 1 cut(s) 907
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 974
Ama87I CYCGRG 2 cut(s) 873, 1145
Aor51HI AGCGCT 1 cut(s) 842
AoxI GGCC 6 cut(s) 546, 583, 598, 1218, 1236, 1381
ApeKI GCWGC 5 cut(s) 195, 389, 395, 398, 1359
ApoI RAATTY 3 cut(s) 128, 1140, 1341
AseI ATTAAT 2 cut(s) 1190, 1443
AspLEI GCGC 2 cut(s) 843, 1134
AspS9I GGNCC 4 cut(s) 218, 599, 666, 1218
AsuHPI GGTGA 3 cut(s) 317, 623, 962
AvaI CYCGRG 2 cut(s) 873, 1145
AvaII GGWCC 2 cut(s) 218, 666
BanII GRGCYC 1 cut(s) 907
BauI CACGAG 2 cut(s) 228, 378
BbsI GAAGAC 2 cut(s) 990, 1403
Bbv12I GWGCWC 1 cut(s) 907
BbvCI CCTCAGC 1 cut(s) 134
BbvI GCAGC 5 cut(s) 207, 376, 382, 385, 1371
BccI CCATC 6 cut(s) 657, 703, 765, 926, 1067, 1228
BceAI ACGGC 1 cut(s) 561
BciT130I CCWGG 3 cut(s) 660, 684, 1389
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 3 cut(s) 320, 354, 531
BfoI RGCGCY 1 cut(s) 844
BisI GCNGC 9 cut(s) 196, 390, 393, 396, 399, 430, 433, 1239, 1360
BlsI GCNGC 9 cut(s) 197, 391, 394, 397, 400, 431, 434, 1240, 1361
Bme1390I CCNGG 3 cut(s) 660, 684, 1389
Bme18I GGWCC 2 cut(s) 218, 666
BmeRI GACNNNNNGTC 1 cut(s) 481
BmeT110I CYCGRG 2 cut(s) 873, 1145
BmgT120I GGNCC 4 cut(s) 218, 599, 666, 1218
BmiI GGNNCC 4 cut(s) 219, 410, 668, 1306
BmrFI CCNGG 3 cut(s) 660, 684, 1389
BmrI ACTGGG 1 cut(s) 19
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 19
BpiI GAAGAC 2 cut(s) 990, 1403
BpmI CTGGAG 2 cut(s) 518, 747
Bpu10I CCTNAGC 1 cut(s) 134
BpuEI CTTGAG 3 cut(s) 659, 993, 1227
Bsa29I ATCGAT 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 4 cut(s) 93, 586, 1146, 1387
BsaXI ACNNNNNCTCC 2 cut(s) 1191, 1221
Bsc4I CCNNNNNNNGG 5 cut(s) 492, 536, 607, 608, 1437
Bse1I ACTGG 3 cut(s) 14, 196, 769
Bse3DI GCAATG 2 cut(s) 518, 862
BseBI CCWGG 3 cut(s) 660, 684, 1389
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 4 cut(s) 93, 586, 1146, 1387
BseGI GGATG 2 cut(s) 668, 776
BseLI CCNNNNNNNGG 5 cut(s) 492, 536, 607, 608, 1437
BseMI GCAATG 2 cut(s) 518, 862
BseMII CTCAG 3 cut(s) 148, 767, 845
BseNI ACTGG 3 cut(s) 14, 196, 769
BseRI GAGGAG 6 cut(s) 36, 603, 855, 858, 861, 1163
BseXI GCAGC 5 cut(s) 207, 376, 382, 385, 1371
BseYI CCCAGC 1 cut(s) 435
BshFI GGCC 6 cut(s) 548, 585, 600, 1220, 1238, 1383
BshVI ATCGAT 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 907
BsiHKCI CYCGRG 2 cut(s) 873, 1145
BslFI GGGAC 4 cut(s) 452, 469, 768, 1080
BslI CCNNNNNNNGG 5 cut(s) 492, 536, 607, 608, 1437
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 4 cut(s) 452, 469, 768, 1080
BsnI GGCC 6 cut(s) 548, 585, 600, 1220, 1238, 1383
Bso31I GGTCTC 1 cut(s) 119
BsoBI CYCGRG 2 cut(s) 873, 1145
Bsp1286I GDGCHC 1 cut(s) 907
Bsp143I GATC 3 cut(s) 952, 979, 1159
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 6 cut(s) 50, 393, 429, 432, 1239, 1438
BspANI GGCC 6 cut(s) 548, 585, 600, 1220, 1238, 1383
BspCNI CTCAG 3 cut(s) 147, 768, 844
BspDI ATCGAT 1 cut(s) 255
BspLI GGNNCC 4 cut(s) 219, 410, 668, 1306
BspPI GGATC 1 cut(s) 974
BspQI GCTCTTC 1 cut(s) 639
BspTNI GGTCTC 1 cut(s) 119
BsrBI CCGCTC 1 cut(s) 1241
BsrDI GCAATG 2 cut(s) 518, 862
BsrI ACTGG 3 cut(s) 14, 196, 769
BssECI CCNNGG 4 cut(s) 93, 586, 1146, 1387
BssMI GATC 3 cut(s) 952, 979, 1159
BssSI CACGAG 2 cut(s) 228, 378
BssT1I CCWWGG 1 cut(s) 93
Bst2BI CACGAG 2 cut(s) 228, 378
Bst2UI CCWGG 3 cut(s) 660, 684, 1389
Bst4CI ACNGT 3 cut(s) 443, 718, 1269
Bst6I CTCTTC 1 cut(s) 639
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 3 cut(s) 134, 776, 831
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 668, 776
BstH2I RGCGCY 1 cut(s) 844
BstHHI GCGC 2 cut(s) 843, 1134
BstKTI GATC 3 cut(s) 955, 982, 1162
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 3 cut(s) 952, 979, 1159
BstMWI GCNNNNNNNGC 3 cut(s) 395, 398, 1244
BstNI CCWGG 3 cut(s) 660, 684, 1389
BstSCI CCNGG 3 cut(s) 658, 682, 1387
BstV1I GCAGC 5 cut(s) 207, 376, 382, 385, 1371
BstV2I GAAGAC 2 cut(s) 990, 1403
BstXI CCANNNNNNTGG 2 cut(s) 100, 556
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 6 cut(s) 548, 585, 600, 1220, 1238, 1383
BsuTUI ATCGAT 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 668, 776
BtsI GCAGTG 1 cut(s) 344
BtsIMutI CAGTG 4 cut(s) 7, 43, 344, 839
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 2 cut(s) 843, 1134
Cfr13I GGNCC 4 cut(s) 218, 599, 666, 1218
ClaI ATCGAT 1 cut(s) 255
Csp6I GTAC 1 cut(s) 189
CviAII CATG 5 cut(s) 94, 239, 607, 758, 889
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 3 cut(s) 134, 776, 831
DpnI GATC 3 cut(s) 954, 981, 1161
DpnII GATC 3 cut(s) 952, 979, 1159
DraIII CACNNNGTG 2 cut(s) 230, 380
DrdI GACNNNNNNGTC 1 cut(s) 216
DriI GACNNNNNGTC 1 cut(s) 481
DseDI GACNNNNNNGTC 1 cut(s) 216
EaeI YGGCCR 3 cut(s) 546, 583, 1236
Eam1104I CTCTTC 1 cut(s) 639
Eam1105I GACNNNNNGTC 1 cut(s) 481
EarI CTCTTC 1 cut(s) 639
Ecl136II GAGCTC 1 cut(s) 905
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 907
Eco31I GGTCTC 1 cut(s) 119
Eco47I GGWCC 2 cut(s) 218, 666
Eco47III AGCGCT 1 cut(s) 842
Eco53kI GAGCTC 1 cut(s) 905
Eco57I CTGAAG 1 cut(s) 225
Eco88I CYCGRG 2 cut(s) 873, 1145
EcoICRI GAGCTC 1 cut(s) 905
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 3 cut(s) 658, 682, 1387
EcoT14I CCWWGG 1 cut(s) 93
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 907
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 5 cut(s) 97, 242, 610, 761, 892
FaqI GGGAC 4 cut(s) 452, 469, 768, 1080
FatI CATG 5 cut(s) 93, 238, 606, 757, 888
FauNDI CATATG 1 cut(s) 264
Fnu4HI GCNGC 9 cut(s) 196, 390, 393, 396, 399, 430, 433, 1239, 1360
FokI GGATG 2 cut(s) 675, 783
FriOI GRGCYC 1 cut(s) 907
Fsp4HI GCNGC 9 cut(s) 196, 390, 393, 396, 399, 430, 433, 1239, 1360
FspBI CTAG 3 cut(s) 320, 354, 531
GlaI GCGC 2 cut(s) 842, 1133
GluI GCNGC 9 cut(s) 196, 390, 393, 396, 399, 430, 433, 1239, 1360
GsaI CCCAGC 1 cut(s) 439
GsuI CTGGAG 2 cut(s) 518, 747
HaeII RGCGCY 1 cut(s) 844
HaeIII GGCC 6 cut(s) 548, 585, 600, 1220, 1238, 1383
HhaI GCGC 2 cut(s) 843, 1134
Hin1II CATG 5 cut(s) 97, 242, 610, 761, 892
Hin6I GCGC 2 cut(s) 841, 1132
HinP1I GCGC 2 cut(s) 841, 1132
HincII GTYRAC 1 cut(s) 1090
HindII GTYRAC 1 cut(s) 1090
HindIII AAGCTT 2 cut(s) 18, 677
HinfI GANTC 6 cut(s) 200, 778, 1037, 1077, 1151, 1228
HphI GGTGA 3 cut(s) 317, 623, 962
Hpy166II GTNNAC 6 cut(s) 65, 281, 793, 1018, 1090, 1272
Hpy8I GTNNAC 6 cut(s) 65, 281, 793, 1018, 1090, 1272
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 4 cut(s) 200, 622, 955, 1145
HpyCH4III ACNGT 3 cut(s) 443, 718, 1269
HpyCH4IV ACGT 2 cut(s) 283, 1406
HpyCH4V TGCA 2 cut(s) 4, 1096
HpyF10VI GCNNNNNNNGC 3 cut(s) 395, 398, 1244
HpyF3I CTNAG 3 cut(s) 134, 776, 831
HpySE526I ACGT 2 cut(s) 283, 1406
Hsp92II CATG 5 cut(s) 97, 242, 610, 761, 892
HspAI GCGC 2 cut(s) 841, 1132
Kzo9I GATC 3 cut(s) 952, 979, 1159
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 3 cut(s) 408, 499, 902
Lsp1109I GCAGC 5 cut(s) 207, 376, 382, 385, 1371
LweI GCATC 1 cut(s) 13
MaeI CTAG 3 cut(s) 320, 354, 531
MaeII ACGT 2 cut(s) 283, 1406
MaeIII GTNAC 4 cut(s) 305, 718, 823, 1333
MalI GATC 3 cut(s) 954, 981, 1161
MbiI CCGCTC 1 cut(s) 1241
MboI GATC 3 cut(s) 952, 979, 1159
MhlI GDGCHC 1 cut(s) 907
MlyI GAGTC 4 cut(s) 209, 787, 1046, 1160
MmeI TCCRAC 2 cut(s) 64, 1032
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 5 cut(s) 917, 1032, 1190, 1364, 1443
MslI CAYNNNNRTG 4 cut(s) 98, 554, 661, 703
MspA1I CMGCKG 2 cut(s) 74, 395
MspR9I CCNGG 3 cut(s) 660, 684, 1389
MvaI CCWGG 3 cut(s) 660, 684, 1389
MwoI GCNNNNNNNGC 3 cut(s) 395, 398, 1244
NcoI CCATGG 1 cut(s) 93
NdeI CATATG 1 cut(s) 264
NdeII GATC 3 cut(s) 952, 979, 1159
NlaIII CATG 5 cut(s) 97, 242, 610, 761, 892
NlaIV GGNNCC 4 cut(s) 219, 410, 668, 1306
NmeAIII GCCGAG 1 cut(s) 611
NmuCI GTSAC 1 cut(s) 305
NsiI ATGCAT 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 554
PaeR7I CTCGAG 1 cut(s) 873
PciSI GCTCTTC 1 cut(s) 639
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 2 cut(s) 1077, 1228
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 9 cut(s) 197, 391, 394, 397, 400, 431, 434, 1240, 1361
PleI GAGTC 4 cut(s) 208, 786, 1045, 1159
PpsI GAGTC 4 cut(s) 208, 786, 1045, 1159
PpuMI RGGWCCY 1 cut(s) 218
PshBI ATTAAT 2 cut(s) 1190, 1443
Psp124BI GAGCTC 1 cut(s) 907
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 3 cut(s) 658, 682, 1387
PspFI CCCAGC 1 cut(s) 435
PspGI CCWGG 3 cut(s) 658, 682, 1387
PspN4I GGNNCC 4 cut(s) 219, 410, 668, 1306
PspPI GGNCC 4 cut(s) 218, 599, 666, 1218
PspPPI RGGWCCY 1 cut(s) 218
PspXI VCTCGAGB 1 cut(s) 873
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 4 cut(s) 98, 554, 661, 703
SacI GAGCTC 1 cut(s) 907
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 5 cut(s) 917, 1032, 1190, 1364, 1443
SatI GCNGC 9 cut(s) 196, 390, 393, 396, 399, 430, 433, 1239, 1360
Sau3AI GATC 3 cut(s) 952, 979, 1159
Sau96I GGNCC 4 cut(s) 218, 599, 666, 1218
SchI GAGTC 4 cut(s) 209, 787, 1046, 1160
ScrFI CCNGG 3 cut(s) 660, 684, 1389
SduI GDGCHC 1 cut(s) 907
SfaNI GCATC 1 cut(s) 13
Sfr274I CTCGAG 1 cut(s) 873
SinI GGWCC 2 cut(s) 218, 666
SlaI CTCGAG 1 cut(s) 873
SmiMI CAYNNNNRTG 4 cut(s) 98, 554, 661, 703
SmlI CTYRAG 4 cut(s) 674, 873, 1008, 1242
SmoI CTYRAG 4 cut(s) 674, 873, 1008, 1242
SsiI CCGC 6 cut(s) 50, 393, 429, 432, 1239, 1438
SspMI CTAG 3 cut(s) 320, 354, 531
SstI GAGCTC 1 cut(s) 907
StyD4I CCNGG 3 cut(s) 658, 682, 1387
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 3 cut(s) 443, 718, 1269
TaiI ACGT 2 cut(s) 286, 1409
TaqI TCGA 6 cut(s) 120, 255, 703, 874, 1315, 1454
TatI WGTACW 1 cut(s) 188
TauI GCSGC 4 cut(s) 395, 432, 435, 1241
TfiI GAWTC 2 cut(s) 1077, 1228
Tru1I TTAA 5 cut(s) 917, 1032, 1190, 1364, 1443
Tru9I TTAA 5 cut(s) 917, 1032, 1190, 1364, 1443
TscAI CASTG 4 cut(s) 14, 43, 344, 839
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 5 cut(s) 195, 389, 395, 398, 1359
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 5 cut(s) 227, 259, 657, 1110, 1227
TspRI CASTG 4 cut(s) 14, 43, 344, 839
VpaK11BI GGWCC 2 cut(s) 218, 666
VspI ATTAAT 2 cut(s) 1190, 1443
XapI RAATTY 3 cut(s) 128, 1140, 1341
XbaI TCTAGA 1 cut(s) 319
XhoI CTCGAG 1 cut(s) 873
XspI CTAG 3 cut(s) 320, 354, 531
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.