RchiOBHm_Chr1g0333031

Galactose oxidase, central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002311
Physical Location & Seq
Reverse (-)
24948076 .. 24948880
805 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56187

Sequence Viewer

Length: 324 bp
ATGTTCTCTATGGTGCAGAAAAGTACAAAATTACTTATAATGTATCTCAGGCACTTCGTGACCACTGGAGGAATTCTACTGCAAGGTTCATACCACTTAATTAAAGAGCTTGGGCCTTTGCTTCGGGATTACCAACACCAAATTACTCGTCGTCACCTGGAGAATGGCGGATCTGATCCAGAGTTGGTTGAGTCTGGTTCTCTTGGAAAAGTGGCTTATGGTTTCTATCATATTAGAAATGTTAATCAGGGTGCTGATGATTTTCAGTTGCGTATCGATGACATTCCAAAGCTGCTAGTAGAGTACAAACAACTACTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kelch_3 Kelch_4

Protein Analysis

107

Amino Acids

12.3

Weight (kDa)

8.04

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
AciI CCGC 1 cut(s) 168
AclWI GGATC 2 cut(s) 170, 178
AcsI RAATTY 1 cut(s) 72
AdeI CACNNNGTG 1 cut(s) 58
AfaI GTAC 2 cut(s) 25, 305
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 2 cut(s) 109, 292
AluI AGCT 2 cut(s) 109, 292
AlwI GGATC 2 cut(s) 170, 178
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 1 cut(s) 72
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 146
BbvI GCAGC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 158
BfaI CTAG 1 cut(s) 296
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
Bme1390I CCNGG 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 158
BpmI CTGGAG 2 cut(s) 87, 179
Bsa29I ATCGAT 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 158
BseCI ATCGAT 1 cut(s) 276
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 70
BseXI GCAGC 1 cut(s) 279
BsgI GTGCAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 115
BshVI ATCGAT 1 cut(s) 276
BsnI GGCC 1 cut(s) 115
Bsp143I GATC 2 cut(s) 170, 175
BspACI CCGC 1 cut(s) 168
BspANI GGCC 1 cut(s) 115
BspCNI CTCAG 1 cut(s) 60
BspDI ATCGAT 1 cut(s) 276
BspPI GGATC 2 cut(s) 170, 178
BsrI ACTGG 1 cut(s) 70
BssMI GATC 2 cut(s) 170, 175
Bst2UI CCWGG 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 47
BstKTI GATC 2 cut(s) 173, 178
BstMBI GATC 2 cut(s) 170, 175
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
Bsu15I ATCGAT 1 cut(s) 276
BsuRI GGCC 1 cut(s) 115
BsuTUI ATCGAT 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 113
ClaI ATCGAT 1 cut(s) 276
Csp6I GTAC 2 cut(s) 24, 304
CviJI RGCY 4 cut(s) 109, 115, 215, 292
CviKI_1 RGCY 4 cut(s) 109, 115, 215, 292
CviQI GTAC 2 cut(s) 24, 304
DdeI CTNAG 1 cut(s) 47
DpnI GATC 2 cut(s) 172, 177
DpnII GATC 2 cut(s) 170, 175
DraIII CACNNNGTG 1 cut(s) 58
EciI GGCGGA 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 156
FaiI YATR 5 cut(s) 11, 38, 91, 219, 231
Fnu4HI GCNGC 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 293
FspBI CTAG 1 cut(s) 296
GluI GCNGC 1 cut(s) 293
GsuI CTGGAG 2 cut(s) 87, 179
HaeIII GGCC 1 cut(s) 115
HinfI GANTC 1 cut(s) 191
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 3 cut(s) 58, 125, 179
Hpy99I CGWCG 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 16, 82
HpyF3I CTNAG 1 cut(s) 47
Kzo9I GATC 2 cut(s) 170, 175
LpnPI CCDG 7 cut(s) 34, 51, 143, 170, 180, 192, 233
Lsp1109I GCAGC 1 cut(s) 279
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 2 cut(s) 58, 152
MalI GATC 2 cut(s) 172, 177
MboI GATC 2 cut(s) 170, 175
MflI RGATCY 1 cut(s) 170
MluCI AATT 5 cut(s) 29, 72, 99, 141, 319
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 1 cut(s) 62
MseI TTAA 5 cut(s) 98, 102, 243, 318, 322
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
NdeII GATC 2 cut(s) 170, 175
NmuCI GTSAC 2 cut(s) 58, 152
PacI TTAATTAA 2 cut(s) 102, 322
PkrI GCNGC 1 cut(s) 294
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PsiI TTATAA 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspPI GGNCC 1 cut(s) 113
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 2 cut(s) 25, 305
RsaNI GTAC 2 cut(s) 24, 304
SaqAI TTAA 5 cut(s) 98, 102, 243, 318, 322
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 2 cut(s) 170, 175
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 158
SetI ASST 4 cut(s) 88, 111, 159, 294
Sse9I AATT 5 cut(s) 29, 72, 99, 141, 319
SsiI CCGC 1 cut(s) 168
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 156
TaqI TCGA 1 cut(s) 276
TasI AATT 5 cut(s) 29, 72, 99, 141, 319
TatI WGTACW 2 cut(s) 23, 303
Tru1I TTAA 5 cut(s) 98, 102, 243, 318, 322
Tru9I TTAA 5 cut(s) 98, 102, 243, 318, 322
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 2 cut(s) 58, 152
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 2 cut(s) 58, 152
TspDTI ATGAA 1 cut(s) 78
TspRI CASTG 1 cut(s) 70
XapI RAATTY 1 cut(s) 72
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.