Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002311

Physical Location & Seq

Genomic Coordinates Forward (+)

23031806 .. 23033134

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G010320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAAAATAATAATGTCCAATCTGAACTCAAGGAAAGCGAAACAGAAGAATCTGCTGTCTCAGAATTGCGAAAAAGATTAGGAATATCAGTTTCTCTCCCTAGTAATGGGGTTCCTGTTGTGGATGAGTTAGAAGACAGAGAACTTATTGAACTAGCTTCAAGTTTGGTTGGAGAAAGAGATACTACTCGTGAACATATTTCACATATTCAGGCACTTCGTGACCACTGGAGGAATTCTACTGCAAGGTTCATACCACTTAAAGAGCTTGGGCCTTTGCTTCGGGTCTACCAACGCCAAATTACTCGTCGTCACCTGGAGAATGGCGGATCTGATCCAGAGTCGGTTGAGTCTGGTTCTCCTAGAAAAGTGGCTTATGATTTCTATCATATTAGAAATGTTAATCAGGGTGCTGATGATTTTCAGTTGCGTATGGATGACATTCCAAAGCTGCTGGCAGAGTACAAACAACTACTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_3 Kelch_4

Protein Analysis

160

Amino Acids

18.35

Weight (kDa)

5.29

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36360 AT2G36360 AT2G36360 AT2G36360 AT2G36360
fragaria_vesca	FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38190 FvH4_5g38190 FvH4_7g05461
malus_domestica	MD02G1248400.v1.1 MD07G1067800.v1.1
prunus_persica	Prupe.2G084800_v2.0.a1 Prupe.2G084800_v2.0.a1
pyrus_communis	pycom02g21300 pycom07g05200
rosa_chinensis	RchiOBHm_Chr1g0333031 RchiOBHm_Chr1g0333101 RchiOBHm_Chr1g0333111 RchiOBHm_Chr1g0333981 RchiOBHm_Chr1g0333991
rosa_laevigata	RLG00000029628
rosa_multiflora	Rmu_sc0024961.1_g000002
rosa_roxburghii	Rroxscaffold_4G00317820
rosa_rugosa	Rorug01G0106600 Rorug01G0106600 Rorug01G0106700 Rorug01G0106800
rosa_samantha	Rh1AG129600 Rh1AG130200 Rh1BG099100 Rh1CG124000 Rh1DG135700
rosa_wichuraiana	Rw1G010260 Rw1G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	2 cut(s)	329, 337
AcsI	RAATTY	1 cut(s)	235
AdeI	CACNNNGTG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	152, 162
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	3 cut(s)	158, 268, 451
AluI	AGCT	3 cut(s)	158, 268, 451
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	2 cut(s)	329, 337
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	1 cut(s)	235
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	305
BauI	CACGAG	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	438
BciT130I	CCWGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	3 cut(s)	102, 155, 363
BisI	GCNGC	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	453
Bme1390I	CCNGG	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	141
BpmI	CTGGAG	2 cut(s)	250, 338
BpuEI	CTTGAG	1 cut(s)	14
BsaBI	GATNNNNATC	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	233
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	130, 442
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	438
BshFI	GGCC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	274
Bsp143I	GATC	2 cut(s)	329, 334
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	2 cut(s)	329, 337
BsrI	ACTGG	1 cut(s)	233
BssMI	GATC	2 cut(s)	329, 334
BssSI	CACGAG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	130, 442
BstKTI	GATC	2 cut(s)	332, 337
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	2 cut(s)	329, 334
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	438
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	130, 442
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	456
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	463
CviJI	RGCY	5 cut(s)	158, 268, 274, 374, 451
CviKI_1	RGCY	5 cut(s)	158, 268, 274, 374, 451
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	2 cut(s)	331, 336
DpnII	GATC	2 cut(s)	329, 334
DraIII	CACNNNGTG	1 cut(s)	221
EciI	GGCGGA	1 cut(s)	342
EcoRI	GAATTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	315
FaiI	YATR	6 cut(s)	198, 207, 254, 378, 390, 434
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	452
FokI	GGATG	2 cut(s)	137, 449
Fsp4HI	GCNGC	1 cut(s)	452
FspBI	CTAG	3 cut(s)	102, 155, 363
GluI	GCNGC	1 cut(s)	452
GsuI	CTGGAG	2 cut(s)	250, 338
HaeIII	GGCC	1 cut(s)	274
HinfI	GANTC	3 cut(s)	50, 341, 350
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	2 cut(s)	194, 289
Hpy188I	TCNGA	3 cut(s)	25, 64, 334
Hpy188III	TCNNGA	3 cut(s)	191, 221, 338
Hpy8I	GTNNAC	2 cut(s)	194, 289
Hpy99I	CGWCG	1 cut(s)	312
HpyCH4V	TGCA	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	329, 334
LpnPI	CCDG	9 cut(s)	129, 197, 214, 302, 329, 339, 351, 392, 440
Lsp1109I	GCAGC	1 cut(s)	438
MaeI	CTAG	3 cut(s)	102, 155, 363
MaeIII	GTNAC	2 cut(s)	221, 311
MalI	GATC	2 cut(s)	331, 336
MboI	GATC	2 cut(s)	329, 334
MboII	GAAGA	2 cut(s)	59, 146
MflI	RGATCY	1 cut(s)	329
MluCI	AATT	4 cut(s)	65, 235, 300, 478
MlyI	GAGTC	2 cut(s)	350, 359
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	1 cut(s)	225
MseI	TTAA	4 cut(s)	261, 402, 477, 481
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
NdeII	GATC	2 cut(s)	329, 334
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	2 cut(s)	221, 311
PacI	TTAATTAA	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	453
PleI	GAGTC	2 cut(s)	349, 358
PpsI	GAGTC	2 cut(s)	349, 358
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SaqAI	TTAA	4 cut(s)	261, 402, 477, 481
SatI	GCNGC	1 cut(s)	452
Sau3AI	GATC	2 cut(s)	329, 334
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	2 cut(s)	350, 359
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	5 cut(s)	160, 251, 270, 318, 453
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	4 cut(s)	65, 235, 300, 478
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	3 cut(s)	102, 155, 363
StyD4I	CCNGG	1 cut(s)	315
TasI	AATT	4 cut(s)	65, 235, 300, 478
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	4 cut(s)	261, 402, 477, 481
Tru9I	TTAA	4 cut(s)	261, 402, 477, 481
TscAI	CASTG	1 cut(s)	233
TseFI	GTSAC	2 cut(s)	221, 311
TseI	GCWGC	1 cut(s)	451
Tsp45I	GTSAC	2 cut(s)	221, 311
TspDTI	ATGAA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	233
XapI	RAATTY	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	3 cut(s)	102, 155, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.