Rorug01G0106700

Galactose oxidase, central domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
19140605 .. 19141829
1225 bp
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UTR
Exon/CDS
Intron
Rorug01G0106700.1

Sequence Viewer

Length: 195 bp
ATGGGTGTTTTGATGAAGGAGACTGACTTTGATAATTTGGGGGTTGCGGTAATGCACAAGATGTTCCAGCTTCTGTGGTCTGTACTTGGTCGTCATTGGTATACAGTCCCTGGTGGAAGGAAGGTTTATGTTGGTAAAACTGGGCAGGAATTGACAGGTCAAGCAGCCCACAGACTATGCTCAAAGGAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

64

Amino Acids

7.19

Weight (kDa)

9.36

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 101
AciI CCGC 1 cut(s) 47
AfaI GTAC 1 cut(s) 84
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 14
AlwNI CAGNNNCTG 2 cut(s) 73, 110
ApeKI GCWGC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 14
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 111
BmrI ACTGGG 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 109
BseNI ACTGG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 176
BslFI GGGAC 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 92
BspACI CCGC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 109
BssNAI GTATAC 1 cut(s) 102
Bst1107I GTATAC 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 176
BstZ17I GTATAC 1 cut(s) 102
CaiI CAGNNNCTG 2 cut(s) 73, 110
Csp6I GTAC 1 cut(s) 83
CviJI RGCY 2 cut(s) 70, 167
CviKI_1 RGCY 2 cut(s) 70, 167
CviQI GTAC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 109
FaiI YATR 3 cut(s) 102, 129, 178
FaqI GGGAC 1 cut(s) 92
FblI GTMKAC 1 cut(s) 101
Fnu4HI GCNGC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 102
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 3 cut(s) 10, 111, 115
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 55
LpnPI CCDG 6 cut(s) 80, 96, 123, 126, 131, 141
Lsp1109I GCAGC 1 cut(s) 176
MluCI AATT 2 cut(s) 34, 149
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
PkrI GCNGC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PstNI CAGNNNCTG 2 cut(s) 73, 110
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SatI GCNGC 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 111
SetI ASST 3 cut(s) 72, 126, 160
SgeI CNNG 9 cut(s) 70, 79, 98, 122, 123, 153, 158, 168, 173
Sse9I AATT 2 cut(s) 34, 149
SsiI CCGC 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 106
TasI AATT 2 cut(s) 34, 149
TatI WGTACW 1 cut(s) 82
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.