Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002311

Physical Location & Seq

Genomic Coordinates Reverse (-)

25015128 .. 25016466

Gene Structure 1339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56194

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCATGAAAGCGAAGCAGAAGAATCTGCTGTCTCAGAATTGCGAAAAAGATTAGGAATATCAGTTTCTCTCCCTAGTAATGGGGTTCCTGTTGTGGATGAGTTAGAAGACAGAGAACTTACTGAACTAGCTTCAAGTTTGGTTGGAGAAAGAGATACCACTTGTGAACATATTTCACATATTCAGGCACTTCGTGACCACTGGAGGAATTCTACTGCAAGGTTCATACCACTTAAAGAGCTTGGGCCTTTGCTTCGGGACTACCAACGCCAAATTACTCGTCGTCACCTGGAGAATGGCGGATCTGATCCAGAGTTGGTTGAGTCTGGTTCTCCTGGAAAAGTGGCTTATGGTTTCTATCATATTAGAAATGTTAATCAGTTGCGTATGGATGACATTCCAAAGCTGCTGGCAGAGTACAAACAACTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_3 Kelch_4

Protein Analysis

144

Amino Acids

16.37

Weight (kDa)

5.51

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36360 AT2G36360 AT2G36360 AT2G36360 AT2G36360
fragaria_vesca	FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38190 FvH4_5g38190 FvH4_7g05461
malus_domestica	MD02G1248400.v1.1 MD07G1067800.v1.1
prunus_persica	Prupe.2G084800_v2.0.a1 Prupe.2G084800_v2.0.a1
pyrus_communis	pycom02g21300 pycom07g05200
rosa_chinensis	RchiOBHm_Chr1g0333031 RchiOBHm_Chr1g0333101 RchiOBHm_Chr1g0333111 RchiOBHm_Chr1g0333981 RchiOBHm_Chr1g0333991
rosa_laevigata	RLG00000029628
rosa_multiflora	Rmu_sc0024961.1_g000002
rosa_roxburghii	Rroxscaffold_4G00317820
rosa_rugosa	Rorug01G0106600 Rorug01G0106600 Rorug01G0106700 Rorug01G0106800
rosa_samantha	Rh1AG129600 Rh1AG130200 Rh1BG099100 Rh1CG124000 Rh1DG135700
rosa_wichuraiana	Rw1G010260 Rw1G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	2 cut(s)	302, 310
AcsI	RAATTY	1 cut(s)	208
AdeI	CACNNNGTG	1 cut(s)	194
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	135
AjnI	CCWGG	2 cut(s)	288, 334
AluBI	AGCT	3 cut(s)	131, 241, 406
AluI	AGCT	3 cut(s)	131, 241, 406
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	302, 310
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	406
ApoI	RAATTY	1 cut(s)	208
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	393
BciT130I	CCWGG	2 cut(s)	290, 336
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	2 cut(s)	75, 128
BisI	GCNGC	1 cut(s)	407
BlsI	GCNGC	1 cut(s)	408
Bme1390I	CCNGG	2 cut(s)	290, 336
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	2 cut(s)	290, 336
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	2 cut(s)	223, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	290, 336
BseGI	GGATG	2 cut(s)	103, 397
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	393
BshFI	GGCC	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	302, 307
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	1 cut(s)	247
BspCNI	CTCAG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	2 cut(s)	302, 310
BsrI	ACTGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	302, 307
Bst2UI	CCWGG	2 cut(s)	290, 336
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	103, 397
BstKTI	GATC	2 cut(s)	305, 310
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	302, 307
BstNI	CCWGG	2 cut(s)	290, 336
BstSCI	CCNGG	2 cut(s)	288, 334
BstV1I	GCAGC	1 cut(s)	393
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	103, 397
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	411
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	5 cut(s)	131, 241, 247, 347, 406
CviKI_1	RGCY	5 cut(s)	131, 241, 247, 347, 406
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	2 cut(s)	304, 309
DpnII	GATC	2 cut(s)	302, 307
DraIII	CACNNNGTG	1 cut(s)	194
EciI	GGCGGA	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	288, 334
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	8
FaiI	YATR	7 cut(s)	6, 171, 180, 227, 351, 363, 389
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	1 cut(s)	4
Fnu4HI	GCNGC	1 cut(s)	407
FokI	GGATG	2 cut(s)	110, 404
Fsp4HI	GCNGC	1 cut(s)	407
FspBI	CTAG	2 cut(s)	75, 128
GluI	GCNGC	1 cut(s)	407
GsuI	CTGGAG	2 cut(s)	223, 311
HaeIII	GGCC	1 cut(s)	247
Hin1II	CATG	1 cut(s)	8
HinfI	GANTC	2 cut(s)	23, 323
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	2 cut(s)	37, 307
Hpy188III	TCNNGA	3 cut(s)	194, 257, 311
Hpy8I	GTNNAC	1 cut(s)	167
Hpy99I	CGWCG	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	4, 218
HpyF3I	CTNAG	1 cut(s)	34
Hsp92II	CATG	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	302, 307
Lsp1109I	GCAGC	1 cut(s)	393
MaeI	CTAG	2 cut(s)	75, 128
MaeIII	GTNAC	2 cut(s)	194, 284
MalI	GATC	2 cut(s)	304, 309
MboI	GATC	2 cut(s)	302, 307
MboII	GAAGA	2 cut(s)	32, 119
MflI	RGATCY	1 cut(s)	302
MluCI	AATT	4 cut(s)	38, 208, 273, 430
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	1 cut(s)	198
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	234, 375, 433
MspR9I	CCNGG	2 cut(s)	290, 336
MvaI	CCWGG	2 cut(s)	290, 336
NdeII	GATC	2 cut(s)	302, 307
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	2 cut(s)	194, 284
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	23
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	408
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Psp6I	CCWGG	2 cut(s)	288, 334
PspGI	CCWGG	2 cut(s)	288, 334
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SaqAI	TTAA	3 cut(s)	234, 375, 433
SatI	GCNGC	1 cut(s)	407
Sau3AI	GATC	2 cut(s)	302, 307
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	2 cut(s)	290, 336
SetI	ASST	5 cut(s)	133, 224, 243, 291, 408
Sse9I	AATT	4 cut(s)	38, 208, 273, 430
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	2 cut(s)	75, 128
StyD4I	CCNGG	2 cut(s)	288, 334
TasI	AATT	4 cut(s)	38, 208, 273, 430
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	3 cut(s)	234, 375, 433
Tru9I	TTAA	3 cut(s)	234, 375, 433
TscAI	CASTG	1 cut(s)	206
TseFI	GTSAC	2 cut(s)	194, 284
TseI	GCWGC	1 cut(s)	406
Tsp45I	GTSAC	2 cut(s)	194, 284
TspDTI	ATGAA	2 cut(s)	21, 214
TspRI	CASTG	1 cut(s)	206
XapI	RAATTY	1 cut(s)	208
XspI	CTAG	2 cut(s)	75, 128
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.