Rh1CG124000

Galactose oxidase, central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002311
Physical Location & Seq
Reverse (-)
27044852 .. 27053805
8954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG124000.1

Sequence Viewer

Length: 1296 bp
ATGTTCATCTTTGGTGGGCGTTGCGGTGGCAAGAGGTTAGGTGACTTTTGGGTCCTAGATACTGATATATGGCAATGGTCAGAGTTGACAAGCTTTGGTGACTTACCCTCAGCACGCGACTTTGCTGCAGCTTCAGCTATTGGAAATCAGAAAATTATTATGTATGGTGGCTGGGATGGTAAAAAGTGGTTGTCAGATGTGTACGTCTTGGACACAATATCACTAGAGTGGATGGAACTGTCAGTTACTGGATCACTGCCACCACCTAGATGTGGCCACACAGCTACTATGGTTGAAAAACGGTTGCTTGTCTATGGCGGCAGAGGAGGTGGAGGTCCTATCATGGGTGATTTATGGGCTTTGAAGGGTGTAATCGCAGAAGAAAATGAAACACCTGGATGGACCCAACTGAAGCTTCCAGGTCAAGCTCCTTCTGCACGTTGTGGCCATACCATCACATCTGGAGGACACTATCTGTTGCTATTTGGAGGCCATGGAACTGGTGGCTGGTTGAGTCGTTATGACATCTATTACAATGACTGCATCATCTTAGACAGGGTTTCTGCACAGTGGAAGCGGTTACCTACTGGCAATGAACCCCCTCCTGCTCGAGCATACCATTCACTGACATGCATTGGCTCACGTTATCTGTTATTTGGTGGTTTTGATGGCAAATCCACATTTGGTGATCTATGGTGGTTGGTTCCTGAAGAGGACCCTATTGCAAACAGGCTTCGTGCAACTTCACCAACCAATATTACCGAAAATAAGGATGTCATGATGGAAAATAATAATGTCCAATCTGAACTCAAGGAAAGCGAAACAGAAGAATCTGCTGTCTCAGAATTGCGAAAAAGATTAGGAATATCAGTTTCTCTCCCTAGTAATGGGGTTCCTGTTGTGGATGAGTTAGAAGACAGAGAACTTATTGAACTAGCTTCAAGTTTGGTTGGAGAAAGAGATGCTACTCGTGAACATATTTCACATATTCAGGCACTTCGTGACCACTGGAGGAATTGTACTGCAAGGTTCATACCACTTAAAGAGCTTGGGCCTTTGCTTCGGGACTACCAACGCCAAATTACTCGTCGTCACCTGGAGAATGGCGGATCTGATCCAGAGTTGGTTGAGTCTGGTTCTCCTGGAAAAGTGGCTTATGGTTTCTATCATATTAGAAATGTTAATCAGGTATCCATCATATCGTTATTTTGTGTAATCCAATTAATCATCATCTTTACCAGATCGATGCTACTGATTATTTTTCTTTTTGCACATCTGGTGTATGTACTCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kelch_3 Kelch_4

Protein Analysis

431

Amino Acids

48.15

Weight (kDa)

5.81

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 1 - 164 6.9e-39 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 1 - 77 1e-14 FBX42, beta-propeller domain
Beta-prop_ATRN-LZTR1 PF24981 1 - 98 5.2e-09 Attractin/LZTR1 beta-propeller
Kelch_HCF PF13854 2 - 58 4.6e-08 Host cell factor, Kelch-repeats domain
Beta-prop_FBX42 PF13415 45 - 122 3.8e-15 FBX42, beta-propeller domain
Kelch_HCF PF13854 50 - 107 1e-07 Host cell factor, Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 54 - 177 5.7e-11 Attractin/LZTR1 beta-propeller
Kelch_KLHDC2_KLHL20_DRC7 PF24681 131 - 237 4.7e-20 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 131 - 234 8.8e-16 FBX42, beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
AccII CGCG 1 cut(s) 117
AciI CCGC 4 cut(s) 24, 318, 577, 1107
AclWI GGATC 3 cut(s) 259, 1109, 1117
AcoI YGGCCR 2 cut(s) 274, 445
AcuI CTGAAG 3 cut(s) 117, 431, 729
AdeI CACNNNGTG 2 cut(s) 443, 1001
AfaI GTAC 3 cut(s) 203, 1021, 1287
AfiI CCNNNNNNNGG 3 cut(s) 272, 344, 887
AgsI TTSAA 4 cut(s) 296, 364, 932, 942
AjnI CCWGG 4 cut(s) 394, 418, 1095, 1141
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
AleI CACNNNNGTG 1 cut(s) 226
AluBI AGCT 8 cut(s) 93, 131, 137, 284, 415, 428, 938, 1048
AluI AGCT 8 cut(s) 93, 131, 137, 284, 415, 428, 938, 1048
Alw26I GTCTC 1 cut(s) 844
AlwI GGATC 3 cut(s) 259, 1109, 1117
AlwNI CAGNNNCTG 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 609
AoxI GGCC 4 cut(s) 274, 445, 490, 1052
ApeKI GCWGC 2 cut(s) 125, 128
ArsI GACNNNNNNTTYG 2 cut(s) 1072, 1104
AseI ATTAAT 1 cut(s) 1223
AspS9I GGNCC 5 cut(s) 52, 335, 402, 715, 1052
AsuHPI GGTGA 6 cut(s) 53, 110, 359, 698, 738, 1085
AvaI CYCGRG 1 cut(s) 609
AvaII GGWCC 4 cut(s) 52, 335, 402, 715
BalI TGGCCA 2 cut(s) 276, 447
BauI CACGAG 1 cut(s) 969
BbsI GAAGAC 1 cut(s) 921
BbvCI CCTCAGC 1 cut(s) 109
BbvI GCAGC 2 cut(s) 112, 140
BccI CCATC 7 cut(s) 170, 226, 393, 461, 662, 775, 1202
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 4 cut(s) 396, 420, 1097, 1143
BciVI GTATCC 1 cut(s) 1201
BcoDI GTCTC 1 cut(s) 844
BfaI CTAG 5 cut(s) 56, 224, 267, 882, 935
BfmI CTRYAG 1 cut(s) 126
BfuI GTATCC 1 cut(s) 1201
BisI GCNGC 3 cut(s) 126, 129, 319
BlsI GCNGC 3 cut(s) 127, 130, 320
Bme1390I CCNGG 4 cut(s) 396, 420, 1097, 1143
Bme18I GGWCC 4 cut(s) 52, 335, 402, 715
BmeT110I CYCGRG 1 cut(s) 609
BmgT120I GGNCC 5 cut(s) 52, 335, 402, 715, 1052
BmiI GGNNCC 5 cut(s) 53, 404, 705, 717, 894
BmrFI CCNGG 4 cut(s) 396, 420, 1097, 1143
BmsI GCATC 3 cut(s) 552, 952, 1236
BpiI GAAGAC 1 cut(s) 921
BpmI CTGGAG 3 cut(s) 483, 1030, 1118
Bpu10I CCTNAGC 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 794
Bsa29I ATCGAT 1 cut(s) 1244
BsaJI CCNNGG 1 cut(s) 493
BsaXI ACNNNNNCTCC 2 cut(s) 1003, 1033
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 344, 887
Bse1I ACTGG 4 cut(s) 253, 505, 592, 1013
Bse3DI GCAATG 2 cut(s) 80, 598
BseBI CCWGG 4 cut(s) 396, 420, 1097, 1143
BseCI ATCGAT 1 cut(s) 1244
BseDI CCNNGG 1 cut(s) 493
BseGI GGATG 5 cut(s) 181, 237, 404, 778, 910
BseLI CCNNNNNNNGG 3 cut(s) 272, 344, 887
BseMI GCAATG 2 cut(s) 80, 598
BseMII CTCAG 2 cut(s) 123, 855
BseNI ACTGG 4 cut(s) 253, 505, 592, 1013
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 2 cut(s) 112, 140
BseYI CCCAGC 1 cut(s) 171
BsgI GTGCAG 2 cut(s) 420, 549
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 4 cut(s) 276, 447, 492, 1054
BshVI ATCGAT 1 cut(s) 1244
BsiHKCI CYCGRG 1 cut(s) 609
BslFI GGGAC 1 cut(s) 1079
BslI CCNNNNNNNGG 3 cut(s) 272, 344, 887
BsmAI GTCTC 1 cut(s) 844
BsmFI GGGAC 1 cut(s) 1079
BsnI GGCC 4 cut(s) 276, 447, 492, 1054
BsoBI CYCGRG 1 cut(s) 609
Bsp143I GATC 5 cut(s) 251, 688, 1109, 1114, 1241
Bsp19I CCATGG 1 cut(s) 493
BspACI CCGC 4 cut(s) 24, 318, 577, 1107
BspANI GGCC 4 cut(s) 276, 447, 492, 1054
BspCNI CTCAG 2 cut(s) 122, 854
BspDI ATCGAT 1 cut(s) 1244
BspFNI CGCG 1 cut(s) 117
BspHI TCATGA 1 cut(s) 777
BspLI GGNNCC 5 cut(s) 53, 404, 705, 717, 894
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 3 cut(s) 259, 1109, 1117
BsrDI GCAATG 2 cut(s) 80, 598
BsrI ACTGG 4 cut(s) 253, 505, 592, 1013
BssECI CCNNGG 1 cut(s) 493
BssMI GATC 5 cut(s) 251, 688, 1109, 1114, 1241
BssSI CACGAG 1 cut(s) 969
BssT1I CCWWGG 1 cut(s) 493
Bst2BI CACGAG 1 cut(s) 969
Bst2UI CCWGG 4 cut(s) 396, 420, 1097, 1143
Bst4CI ACNGT 3 cut(s) 240, 303, 570
Bst6I CTCTTC 1 cut(s) 705
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 3 cut(s) 109, 550, 841
BstDSI CCRYGG 1 cut(s) 493
BstEII GGTNACC 1 cut(s) 579
BstF5I GGATG 5 cut(s) 181, 237, 404, 778, 910
BstFNI CGCG 1 cut(s) 117
BstKTI GATC 5 cut(s) 254, 691, 1112, 1117, 1244
BstMAI GTCTC 1 cut(s) 844
BstMBI GATC 5 cut(s) 251, 688, 1109, 1114, 1241
BstMWI GCNNNNNNNGC 2 cut(s) 134, 434
BstNI CCWGG 4 cut(s) 396, 420, 1097, 1143
BstNSI RCATGY 1 cut(s) 633
BstPI GGTNACC 1 cut(s) 579
BstSCI CCNGG 4 cut(s) 394, 418, 1095, 1141
BstSFI CTRYAG 1 cut(s) 126
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 112, 140
BstV2I GAAGAC 1 cut(s) 921
BstX2I RGATCY 1 cut(s) 1109
BstXI CCANNNNNNTGG 1 cut(s) 500
BstYI RGATCY 1 cut(s) 1109
Bsu15I ATCGAT 1 cut(s) 1244
BsuI GTATCC 1 cut(s) 1201
BsuRI GGCC 4 cut(s) 276, 447, 492, 1054
BsuTUI ATCGAT 1 cut(s) 1244
BtgI CCRYGG 1 cut(s) 493
BtsCI GGATG 5 cut(s) 181, 237, 404, 778, 910
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 4 cut(s) 254, 575, 623, 1006
Cac8I GCNNGC 1 cut(s) 115
CaiI CAGNNNCTG 1 cut(s) 248
CciI TCATGA 1 cut(s) 777
Cfr13I GGNCC 5 cut(s) 52, 335, 402, 715, 1052
ClaI ATCGAT 1 cut(s) 1244
Csp6I GTAC 3 cut(s) 202, 1020, 1286
CviAII CATG 4 cut(s) 343, 494, 630, 778
CviQI GTAC 3 cut(s) 202, 1020, 1286
DdeI CTNAG 3 cut(s) 109, 550, 841
DpnI GATC 5 cut(s) 253, 690, 1111, 1116, 1243
DpnII GATC 5 cut(s) 251, 688, 1109, 1114, 1241
DraIII CACNNNGTG 2 cut(s) 443, 1001
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
EaeI YGGCCR 2 cut(s) 274, 445
Eam1104I CTCTTC 1 cut(s) 705
EarI CTCTTC 1 cut(s) 705
EciI GGCGGA 1 cut(s) 1122
Eco130I CCWWGG 1 cut(s) 493
Eco47I GGWCC 4 cut(s) 52, 335, 402, 715
Eco57I CTGAAG 3 cut(s) 117, 431, 729
Eco88I CYCGRG 1 cut(s) 609
Eco91I GGTNACC 1 cut(s) 579
EcoO109I RGGNCCY 3 cut(s) 52, 335, 715
EcoO65I GGTNACC 1 cut(s) 579
EcoRII CCWGG 4 cut(s) 394, 418, 1095, 1141
EcoT14I CCWWGG 1 cut(s) 493
EcoT22I ATGCAT 1 cut(s) 635
ErhI CCWWGG 1 cut(s) 493
FaeI CATG 4 cut(s) 346, 497, 633, 781
FaqI GGGAC 1 cut(s) 1079
FatI CATG 4 cut(s) 342, 493, 629, 777
Fnu4HI GCNGC 3 cut(s) 126, 129, 319
FokI GGATG 5 cut(s) 188, 244, 411, 785, 917
Fsp4HI GCNGC 3 cut(s) 126, 129, 319
FspBI CTAG 5 cut(s) 56, 224, 267, 882, 935
GluI GCNGC 3 cut(s) 126, 129, 319
GsaI CCCAGC 1 cut(s) 175
GsuI CTGGAG 3 cut(s) 483, 1030, 1118
HaeIII GGCC 4 cut(s) 276, 447, 492, 1054
Hin1II CATG 4 cut(s) 346, 497, 633, 781
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HindIII AAGCTT 2 cut(s) 91, 413
HinfI GANTC 3 cut(s) 514, 830, 1130
HphI GGTGA 6 cut(s) 53, 110, 359, 698, 738, 1085
Hpy166II GTNNAC 3 cut(s) 87, 202, 974
Hpy188I TCNGA 6 cut(s) 82, 150, 196, 805, 844, 1114
Hpy188III TCNNGA 7 cut(s) 462, 707, 778, 971, 1001, 1064, 1118
Hpy8I GTNNAC 3 cut(s) 87, 202, 974
Hpy99I CGWCG 1 cut(s) 1092
HpyAV CCTTC 2 cut(s) 358, 441
HpyCH4III ACNGT 3 cut(s) 240, 303, 570
HpyCH4IV ACGT 3 cut(s) 204, 439, 643
HpyCH4V TGCA 9 cut(s) 128, 437, 543, 566, 633, 725, 740, 1025, 1271
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 434
HpyF3I CTNAG 3 cut(s) 109, 550, 841
HpySE526I ACGT 3 cut(s) 204, 439, 643
Hsp92II CATG 4 cut(s) 346, 497, 633, 781
Kzo9I GATC 5 cut(s) 251, 688, 1109, 1114, 1241
LmnI GCTCC 1 cut(s) 433
Lsp1109I GCAGC 2 cut(s) 112, 140
LweI GCATC 3 cut(s) 552, 952, 1236
MaeI CTAG 5 cut(s) 56, 224, 267, 882, 935
MaeII ACGT 3 cut(s) 204, 439, 643
MaeIII GTNAC 6 cut(s) 41, 98, 244, 579, 1001, 1091
MalI GATC 5 cut(s) 253, 690, 1111, 1116, 1243
MboI GATC 5 cut(s) 251, 688, 1109, 1114, 1241
MboII GAAGA 4 cut(s) 392, 722, 839, 926
MflI RGATCY 1 cut(s) 1109
MlsI TGGCCA 2 cut(s) 276, 447
MluCI AATT 5 cut(s) 153, 845, 1015, 1080, 1220
MluNI TGGCCA 2 cut(s) 276, 447
MlyI GAGTC 2 cut(s) 523, 1139
MmeI TCCRAC 1 cut(s) 931
Mox20I TGGCCA 2 cut(s) 276, 447
Mph1103I ATGCAT 1 cut(s) 635
MscI TGGCCA 2 cut(s) 276, 447
MseI TTAA 3 cut(s) 1041, 1182, 1223
MslI CAYNNNNRTG 4 cut(s) 226, 268, 397, 628
Msp20I TGGCCA 2 cut(s) 276, 447
MspR9I CCNGG 4 cut(s) 396, 420, 1097, 1143
MvaI CCWGG 4 cut(s) 396, 420, 1097, 1143
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 134, 434
NcoI CCATGG 1 cut(s) 493
NdeII GATC 5 cut(s) 251, 688, 1109, 1114, 1241
NlaIII CATG 4 cut(s) 346, 497, 633, 781
NlaIV GGNNCC 5 cut(s) 53, 404, 705, 717, 894
NmuCI GTSAC 4 cut(s) 41, 98, 1001, 1091
NsiI ATGCAT 1 cut(s) 635
NspI RCATGY 1 cut(s) 633
OliI CACNNNNGTG 1 cut(s) 226
PaeR7I CTCGAG 1 cut(s) 609
PagI TCATGA 1 cut(s) 777
PfeI GAWTC 1 cut(s) 830
PfoI TCCNGGA 1 cut(s) 1141
PkrI GCNGC 3 cut(s) 127, 130, 320
PleI GAGTC 2 cut(s) 522, 1138
PpsI GAGTC 2 cut(s) 522, 1138
PpuMI RGGWCCY 3 cut(s) 52, 335, 715
PshBI ATTAAT 1 cut(s) 1223
Psp5II RGGWCCY 3 cut(s) 52, 335, 715
Psp6I CCWGG 4 cut(s) 394, 418, 1095, 1141
PspEI GGTNACC 1 cut(s) 579
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 4 cut(s) 394, 418, 1095, 1141
PspN4I GGNNCC 5 cut(s) 53, 404, 705, 717, 894
PspPI GGNCC 5 cut(s) 52, 335, 402, 715, 1052
PspPPI RGGWCCY 3 cut(s) 52, 335, 715
PspXI VCTCGAGB 1 cut(s) 609
PstI CTGCAG 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 248
PsuI RGATCY 1 cut(s) 1109
RsaI GTAC 3 cut(s) 203, 1021, 1287
RsaNI GTAC 3 cut(s) 202, 1020, 1286
RseI CAYNNNNRTG 4 cut(s) 226, 268, 397, 628
SaqAI TTAA 3 cut(s) 1041, 1182, 1223
SatI GCNGC 3 cut(s) 126, 129, 319
Sau3AI GATC 5 cut(s) 251, 688, 1109, 1114, 1241
Sau96I GGNCC 5 cut(s) 52, 335, 402, 715, 1052
SchI GAGTC 2 cut(s) 523, 1139
ScrFI CCNGG 4 cut(s) 396, 420, 1097, 1143
SfaNI GCATC 3 cut(s) 552, 952, 1236
SfcI CTRYAG 1 cut(s) 126
Sfr274I CTCGAG 1 cut(s) 609
SinI GGWCC 4 cut(s) 52, 335, 402, 715
SlaI CTCGAG 1 cut(s) 609
SmiMI CAYNNNNRTG 4 cut(s) 226, 268, 397, 628
SmlI CTYRAG 2 cut(s) 609, 809
SmoI CTYRAG 2 cut(s) 609, 809
Sse9I AATT 5 cut(s) 153, 845, 1015, 1080, 1220
SsiI CCGC 4 cut(s) 24, 318, 577, 1107
SspI AATATT 1 cut(s) 757
SspMI CTAG 5 cut(s) 56, 224, 267, 882, 935
StyD4I CCNGG 4 cut(s) 394, 418, 1095, 1141
StyI CCWWGG 1 cut(s) 493
TaaI ACNGT 3 cut(s) 240, 303, 570
TaiI ACGT 3 cut(s) 207, 442, 646
TaqI TCGA 2 cut(s) 610, 1244
TasI AATT 5 cut(s) 153, 845, 1015, 1080, 1220
TatI WGTACW 2 cut(s) 1019, 1285
TauI GCSGC 1 cut(s) 321
TfiI GAWTC 1 cut(s) 830
Tru1I TTAA 3 cut(s) 1041, 1182, 1223
Tru9I TTAA 3 cut(s) 1041, 1182, 1223
TscAI CASTG 4 cut(s) 261, 575, 630, 1013
TseFI GTSAC 4 cut(s) 41, 98, 1001, 1091
TseI GCWGC 2 cut(s) 125, 128
Tsp45I GTSAC 4 cut(s) 41, 98, 1001, 1091
TspDTI ATGAA 3 cut(s) 402, 609, 1021
TspRI CASTG 4 cut(s) 261, 575, 630, 1013
VpaK11BI GGWCC 4 cut(s) 52, 335, 402, 715
VspI ATTAAT 1 cut(s) 1223
XceI RCATGY 1 cut(s) 633
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XhoI CTCGAG 1 cut(s) 609
XspI CTAG 5 cut(s) 56, 224, 267, 882, 935
Zsp2I ATGCAT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.