Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002311

Physical Location & Seq

Genomic Coordinates Reverse (-)

24484687 .. 24490812

Gene Structure 6126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG129600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGTTTGAGGACAGTGGGGATTTCGAATCTAGGCAGCCCCTTTAGCTCCCCAAGACCACCTCTTCATGGGGATAAGAGGAGCTGGGGTAGTAGTAAATGGAAGCGGTTACCTACTGGCAATGAACCCCCTCCTGCTCGAGCATACCATTCACTGACATGCATTGGCTCACGTTATCTGTTATTTGGTGGCTTTGATGGCAAATCCACATTTGGTGATCTATGGTGGTTGGTTCCTGAAGAGGACCCTATTGCAAACAGGCTTTGTGCTACTTCACCAACCAATATTACCGAAAATAAGGACGTCATGATGGAAAATAATAATGTCCAATCTGAACTCAAGGAAAGCGAAACAGAAGAATCTGCTGTCTCAGAATTGCGAAAAAGATTACGAATATCAGTTTCTCTCCCTAGTAATGGGGTTCCTGTTGTGGATGAGTTAGAAGACAGAGAACTTATTGAACTAAGCTTCAAGCACTTCGTGACCGCTGGAGGAATTCTACTGCAAGGCTCATACTTCATACCACTTAAAGAGCTTGGGCCTTTGCTTCGAGACTACCAACGCCAAATTACTCGTCGTCACCTGGAGAATGGCGGATCTGATCCAGAGTTGGTTGAGTCTGGTTCTCCTGGAAAAGTGGCTTATGGTTTCTATCATATTAGAAATGTTAATCAGGATCCTCCTGAATACTATATCTCCCTTCTGGGTGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_3 Kelch_4

Protein Analysis

238

Amino Acids

26.6

Weight (kDa)

5.5

Isoelectric Point (pI)

66.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	31 - 81	9.1e-09	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42	PF13415	31 - 78	6.8e-06	FBX42, beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36360 AT2G36360 AT2G36360 AT2G36360 AT2G36360
fragaria_vesca	FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38190 FvH4_5g38190 FvH4_7g05461
malus_domestica	MD02G1248400.v1.1 MD07G1067800.v1.1
prunus_persica	Prupe.2G084800_v2.0.a1 Prupe.2G084800_v2.0.a1
pyrus_communis	pycom02g21300 pycom07g05200
rosa_chinensis	RchiOBHm_Chr1g0333031 RchiOBHm_Chr1g0333101 RchiOBHm_Chr1g0333111 RchiOBHm_Chr1g0333981 RchiOBHm_Chr1g0333991
rosa_laevigata	RLG00000029628
rosa_multiflora	Rmu_sc0024961.1_g000002
rosa_roxburghii	Rroxscaffold_4G00317820
rosa_rugosa	Rorug01G0106600 Rorug01G0106600 Rorug01G0106700 Rorug01G0106800
rosa_samantha	Rh1AG129600 Rh1AG130200 Rh1BG099100 Rh1CG124000 Rh1DG135700
rosa_wichuraiana	Rw1G010260 Rw1G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	306
AciI	CCGC	3 cut(s)	106, 486, 594
AclWI	GGATC	4 cut(s)	596, 604, 671, 684
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	258
AcyI	GRCGYC	1 cut(s)	303
AdeI	CACNNNGTG	1 cut(s)	481
AfiI	CCNNNNNNNGG	2 cut(s)	68, 416
AgsI	TTSAA	2 cut(s)	461, 472
AjnI	CCWGG	2 cut(s)	582, 628
AluBI	AGCT	4 cut(s)	48, 84, 468, 535
AluI	AGCT	4 cut(s)	48, 84, 468, 535
Alw26I	GTCTC	2 cut(s)	373, 546
AlwI	GGATC	4 cut(s)	596, 604, 671, 684
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	1 cut(s)	539
ApeKI	GCWGC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	495
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AspS9I	GGNCC	2 cut(s)	244, 539
AsuHPI	GGTGA	3 cut(s)	227, 267, 572
AsuII	TTCGAA	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	244
BamHI	GGATCC	1 cut(s)	676
BbsI	GAAGAC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	2 cut(s)	191, 304
BciT130I	CCWGG	2 cut(s)	584, 630
BcoDI	GTCTC	2 cut(s)	373, 546
BfaI	CTAG	2 cut(s)	32, 411
BisI	GCNGC	1 cut(s)	37
BlsI	GCNGC	1 cut(s)	38
Bme1390I	CCNGG	2 cut(s)	584, 630
Bme18I	GGWCC	1 cut(s)	244
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	244, 539
BmiI	GGNNCC	4 cut(s)	234, 246, 423, 678
BmrFI	CCNGG	2 cut(s)	584, 630
BpiI	GAAGAC	1 cut(s)	450
BpmI	CTGGAG	2 cut(s)	510, 605
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	303
BsaXI	ACNNNNNCTCC	4 cut(s)	73, 103, 680, 710
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 416
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	584, 630
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	2 cut(s)	68, 416
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	541
BsiHKCI	CYCGRG	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	68, 416
BsmAI	GTCTC	2 cut(s)	373, 546
BsnI	GGCC	1 cut(s)	541
BsoBI	CYCGRG	1 cut(s)	138
Bsp119I	TTCGAA	1 cut(s)	26
Bsp143I	GATC	4 cut(s)	217, 596, 601, 676
BspACI	CCGC	3 cut(s)	106, 486, 594
BspANI	GGCC	1 cut(s)	541
BspCNI	CTCAG	1 cut(s)	383
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	4 cut(s)	234, 246, 423, 678
BspPI	GGATC	4 cut(s)	596, 604, 671, 684
BspT104I	TTCGAA	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	4 cut(s)	217, 596, 601, 676
BssNI	GRCGYC	1 cut(s)	303
Bst2UI	CCWGG	2 cut(s)	584, 630
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	2 cut(s)	69, 234
BstACI	GRCGYC	1 cut(s)	303
BstBI	TTCGAA	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	370, 464
BstEII	GGTNACC	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	439
BstKTI	GATC	4 cut(s)	220, 599, 604, 679
BstMAI	GTCTC	2 cut(s)	373, 546
BstMBI	GATC	4 cut(s)	217, 596, 601, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 198
BstNI	CCWGG	2 cut(s)	584, 630
BstNSI	RCATGY	1 cut(s)	162
BstPI	GGTNACC	1 cut(s)	108
BstSCI	CCNGG	2 cut(s)	582, 628
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	2 cut(s)	596, 676
BstYI	RGATCY	2 cut(s)	596, 676
BsuRI	GGCC	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	21, 152
CciI	TCATGA	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	244, 539
CviAII	CATG	3 cut(s)	68, 159, 307
DdeI	CTNAG	2 cut(s)	370, 464
DpnI	GATC	4 cut(s)	219, 598, 603, 678
DpnII	GATC	4 cut(s)	217, 596, 601, 676
DraIII	CACNNNGTG	1 cut(s)	481
Eam1104I	CTCTTC	2 cut(s)	69, 234
EarI	CTCTTC	2 cut(s)	69, 234
EciI	GGCGGA	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	138
Eco91I	GGTNACC	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	244
EcoO65I	GGTNACC	1 cut(s)	108
EcoRI	GAATTC	1 cut(s)	495
EcoRII	CCWGG	2 cut(s)	582, 628
EcoT22I	ATGCAT	1 cut(s)	164
FaeI	CATG	3 cut(s)	71, 162, 310
FatI	CATG	3 cut(s)	67, 158, 306
Fnu4HI	GCNGC	1 cut(s)	37
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	1 cut(s)	37
FspBI	CTAG	2 cut(s)	32, 411
GluI	GCNGC	1 cut(s)	37
GsaI	CCCAGC	1 cut(s)	88
GsuI	CTGGAG	2 cut(s)	510, 605
HaeIII	GGCC	1 cut(s)	541
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	3 cut(s)	71, 162, 310
HindIII	AAGCTT	1 cut(s)	466
HinfI	GANTC	3 cut(s)	28, 359, 617
HphI	GGTGA	3 cut(s)	227, 267, 572
Hpy188I	TCNGA	3 cut(s)	334, 373, 601
Hpy188III	TCNNGA	7 cut(s)	236, 307, 481, 551, 605, 674, 683
Hpy99I	CGWCG	1 cut(s)	579
HpyAV	CCTTC	1 cut(s)	710
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	2 cut(s)	172, 303
HpyCH4V	TGCA	3 cut(s)	162, 254, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 198
HpyF3I	CTNAG	2 cut(s)	370, 464
HpySE526I	ACGT	2 cut(s)	172, 303
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	71, 162, 310
Kzo9I	GATC	4 cut(s)	217, 596, 601, 676
LmnI	GCTCC	2 cut(s)	53, 81
Lsp1109I	GCAGC	1 cut(s)	48
MaeI	CTAG	2 cut(s)	32, 411
MaeII	ACGT	2 cut(s)	172, 303
MaeIII	GTNAC	3 cut(s)	108, 481, 578
MalI	GATC	4 cut(s)	219, 598, 603, 678
MboI	GATC	4 cut(s)	217, 596, 601, 676
MboII	GAAGA	4 cut(s)	56, 251, 368, 455
MflI	RGATCY	2 cut(s)	596, 676
MluCI	AATT	3 cut(s)	374, 495, 567
MlyI	GAGTC	1 cut(s)	626
MnlI	CCTC	7 cut(s)	3, 72, 72, 141, 235, 485, 690
Mph1103I	ATGCAT	1 cut(s)	164
MseI	TTAA	2 cut(s)	528, 669
MslI	CAYNNNNRTG	1 cut(s)	157
MspA1I	CMGCKG	1 cut(s)	488
MspR9I	CCNGG	2 cut(s)	584, 630
MvaI	CCWGG	2 cut(s)	584, 630
MwoI	GCNNNNNNNGC	2 cut(s)	45, 198
NdeII	GATC	4 cut(s)	217, 596, 601, 676
NlaIII	CATG	3 cut(s)	71, 162, 310
NlaIV	GGNNCC	4 cut(s)	234, 246, 423, 678
NmuCI	GTSAC	2 cut(s)	481, 578
NsiI	ATGCAT	1 cut(s)	164
NspI	RCATGY	1 cut(s)	162
NspV	TTCGAA	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	138
PagI	TCATGA	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	28, 359
PfoI	TCCNGGA	1 cut(s)	628
PkrI	GCNGC	1 cut(s)	38
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
PpuMI	RGGWCCY	1 cut(s)	244
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	582, 628
PspEI	GGTNACC	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	2 cut(s)	582, 628
PspN4I	GGNNCC	4 cut(s)	234, 246, 423, 678
PspPI	GGNCC	2 cut(s)	244, 539
PspPPI	RGGWCCY	1 cut(s)	244
PspXI	VCTCGAGB	1 cut(s)	138
PsuI	RGATCY	2 cut(s)	596, 676
RseI	CAYNNNNRTG	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	528, 669
SatI	GCNGC	1 cut(s)	37
Sau3AI	GATC	4 cut(s)	217, 596, 601, 676
Sau96I	GGNCC	2 cut(s)	244, 539
SchI	GAGTC	1 cut(s)	626
ScrFI	CCNGG	2 cut(s)	584, 630
SetI	ASST	9 cut(s)	50, 64, 86, 115, 175, 306, 470, 537, 585
Sfr274I	CTCGAG	1 cut(s)	138
SfuI	TTCGAA	1 cut(s)	26
SinI	GGWCC	1 cut(s)	244
SlaI	CTCGAG	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	157
SmlI	CTYRAG	2 cut(s)	138, 338
SmoI	CTYRAG	2 cut(s)	138, 338
Sse9I	AATT	3 cut(s)	374, 495, 567
SsiI	CCGC	3 cut(s)	106, 486, 594
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	2 cut(s)	32, 411
StyD4I	CCNGG	2 cut(s)	582, 628
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	2 cut(s)	175, 306
TaqI	TCGA	3 cut(s)	26, 139, 550
TasI	AATT	3 cut(s)	374, 495, 567
TfiI	GAWTC	2 cut(s)	28, 359
Tru1I	TTAA	2 cut(s)	528, 669
Tru9I	TTAA	2 cut(s)	528, 669
TscAI	CASTG	2 cut(s)	21, 159
TseFI	GTSAC	2 cut(s)	481, 578
TseI	GCWGC	1 cut(s)	36
Tsp45I	GTSAC	2 cut(s)	481, 578
TspDTI	ATGAA	3 cut(s)	56, 138, 508
TspRI	CASTG	2 cut(s)	21, 159
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	1 cut(s)	495
XceI	RCATGY	1 cut(s)	162
XhoI	CTCGAG	1 cut(s)	138
XspI	CTAG	2 cut(s)	32, 411
ZraI	GACGTC	1 cut(s)	304
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.