Rorug01G0106800

Galactose oxidase, central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002311
Physical Location & Seq
Reverse (-)
19148849 .. 19151617
2769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0106800.1

Sequence Viewer

Length: 699 bp
ATGAGATCAATATCAATGTGGAGGAAAGCCACATCATTCTCAGGGTTTGGTGCCACACTGAGCCACCACCTATGCCGGCGCCACTCCACCGCCACGGCTGTGAACTCGGTGCTCCTCCGCTCCCTGAAAGAGCACTATCTGGAAGTGTCCAAAATGACCCCTCCCCCTAAAGTCAACCCTCCCTCGCCTTTCACCGTCGTCAAGGGCGCGCTCGACGGCGCCGGTCCCGTGCTCAAGCGCAGCTACGGCGACGAACAAATCGGCATATCGGTCATGCGAATGGATAATATTATTCCCGGCGGAGGTGCCGCCGGCGGAGGAGAAGACGCCGACGACGACGACGACGACATCAACCAGTTGTTCCTACACGTCGAGGTTTCGAAGCCGGGACAGAAGGAGTCTCTGCTTTTTCTTTGTGGGCTGTATCCGGACGCCCTAGGCATTCACTCTGTCTCTATCAGGCCTATGGCCGACGCCTCTGATTACGCTGCGCCTCGTTCTTCAGCATATACTGGCCCTCTTTTTGAAGATCTTGATGAAGGGATGAAGGATGCATTCCACAGCTACATAGAAGAGCGGGGTGTGGGTGATAGTCTTTTTCCATTTCTTCGAGCATGGCTATATGTCAAAGACCATCGTAATCTTATGCGCTGGTTTAAAACAGTAGGATCATTTGTTAATGAAACTAAGTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kelch_3 Kelch_4

Protein Analysis

232

Amino Acids

25.48

Weight (kDa)

6.05

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 77 - 226 1.3e-23 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 50, 78, 218, 305
AccBSI CCGCTC 2 cut(s) 120, 577
AccII CGCG 1 cut(s) 209
AccIII TCCGGA 1 cut(s) 427
AciI CCGC 6 cut(s) 90, 118, 300, 309, 315, 577
AclWI GGATC 1 cut(s) 676
AcoI YGGCCR 1 cut(s) 468
AcuI CTGAAG 1 cut(s) 486
AcyI GRCGYC 5 cut(s) 79, 219, 327, 432, 474
AfiI CCNNNNNNNGG 1 cut(s) 302
AflIII ACRYGT 1 cut(s) 367
AgsI TTSAA 1 cut(s) 527
AjiI CACGTC 1 cut(s) 370
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 2 cut(s) 243, 564
AluI AGCT 2 cut(s) 243, 564
Alw21I GWGCWC 3 cut(s) 114, 135, 234
Alw26I GTCTC 2 cut(s) 405, 457
AlwI GGATC 1 cut(s) 676
Aor13HI TCCGGA 1 cut(s) 427
AoxI GGCC 3 cut(s) 461, 468, 514
ApeKI GCWGC 2 cut(s) 240, 488
AspA2I CCTAGG 1 cut(s) 436
AspLEI GCGC 7 cut(s) 81, 209, 211, 221, 240, 493, 651
AspS9I GGNCC 2 cut(s) 224, 515
AsuC2I CCSGG 2 cut(s) 297, 387
AsuHPI GGTGA 2 cut(s) 184, 599
AsuII TTCGAA 1 cut(s) 380
AvaII GGWCC 1 cut(s) 224
AvrII CCTAGG 1 cut(s) 436
BanI GGYRCC 4 cut(s) 50, 78, 218, 305
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 3 cut(s) 114, 135, 234
BbvI GCAGC 2 cut(s) 252, 475
BccI CCATC 1 cut(s) 642
BceAI ACGGC 3 cut(s) 111, 232, 262
BciVI GTATCC 1 cut(s) 435
BcnI CCSGG 2 cut(s) 297, 387
BcoDI GTCTC 2 cut(s) 405, 457
BfaI CTAG 1 cut(s) 437
BfoI RGCGCY 2 cut(s) 82, 222
BfuI GTATCC 1 cut(s) 435
BglII AGATCT 1 cut(s) 529
BisI GCNGC 3 cut(s) 241, 309, 489
BlnI CCTAGG 1 cut(s) 436
BlsI GCNGC 3 cut(s) 242, 310, 490
Bme1390I CCNGG 2 cut(s) 297, 387
Bme18I GGWCC 1 cut(s) 224
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 224, 515
BmiI GGNNCC 5 cut(s) 52, 80, 220, 226, 307
BmrFI CCNGG 2 cut(s) 297, 387
BmsI GCATC 1 cut(s) 541
BpiI GAAGAC 1 cut(s) 330
Bpu14I TTCGAA 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 2 cut(s) 297, 387
BsaBI GATNNNNATC 1 cut(s) 10
BsaHI GRCGYC 5 cut(s) 79, 219, 327, 432, 474
BsaJI CCNNGG 2 cut(s) 93, 436
BsaWI WCCGGW 1 cut(s) 427
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse118I RCCGGY 3 cut(s) 75, 221, 311
Bse1I ACTGG 2 cut(s) 355, 517
Bse8I GATNNNNATC 1 cut(s) 10
BseAI TCCGGA 1 cut(s) 427
BseDI CCNNGG 2 cut(s) 93, 436
BseGI GGATG 2 cut(s) 549, 556
BseJI GATNNNNATC 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMII CTCAG 2 cut(s) 50, 54
BseNI ACTGG 2 cut(s) 355, 517
BsePI GCGCGC 1 cut(s) 207
BseRI GAGGAG 2 cut(s) 104, 333
BseXI GCAGC 2 cut(s) 252, 475
Bsh1236I CGCG 1 cut(s) 209
BshFI GGCC 3 cut(s) 463, 470, 516
BshNI GGYRCC 4 cut(s) 50, 78, 218, 305
BsiHKAI GWGCWC 3 cut(s) 114, 135, 234
BsiSI CCGG 6 cut(s) 76, 222, 297, 312, 386, 428
BslFI GGGAC 2 cut(s) 210, 402
BslI CCNNNNNNNGG 1 cut(s) 302
BsmAI GTCTC 2 cut(s) 405, 457
BsmFI GGGAC 2 cut(s) 210, 402
BsmI GAATGC 2 cut(s) 441, 554
BsnI GGCC 3 cut(s) 463, 470, 516
Bsp119I TTCGAA 1 cut(s) 380
Bsp1286I GDGCHC 3 cut(s) 114, 135, 234
Bsp13I TCCGGA 1 cut(s) 427
Bsp143I GATC 3 cut(s) 5, 529, 668
BspACI CCGC 6 cut(s) 90, 118, 300, 309, 315, 577
BspANI GGCC 3 cut(s) 463, 470, 516
BspCNI CTCAG 2 cut(s) 51, 53
BspEI TCCGGA 1 cut(s) 427
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 5 cut(s) 52, 80, 220, 226, 307
BspPI GGATC 1 cut(s) 676
BspQI GCTCTTC 1 cut(s) 567
BspT104I TTCGAA 1 cut(s) 380
BspT107I GGYRCC 4 cut(s) 50, 78, 218, 305
BsrBI CCGCTC 2 cut(s) 120, 577
BsrFI RCCGGY 3 cut(s) 75, 221, 311
BsrI ACTGG 2 cut(s) 355, 517
BssAI RCCGGY 3 cut(s) 75, 221, 311
BssECI CCNNGG 2 cut(s) 93, 436
BssHII GCGCGC 1 cut(s) 207
BssMI GATC 3 cut(s) 5, 529, 668
BssNI GRCGYC 5 cut(s) 79, 219, 327, 432, 474
BssT1I CCWWGG 1 cut(s) 436
Bst4CI ACNGT 2 cut(s) 196, 664
Bst6I CTCTTC 1 cut(s) 567
BstACI GRCGYC 5 cut(s) 79, 219, 327, 432, 474
BstBI TTCGAA 1 cut(s) 380
BstC8I GCNNGC 3 cut(s) 77, 209, 313
BstDEI CTNAG 3 cut(s) 40, 59, 687
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 549, 556
BstFNI CGCG 1 cut(s) 209
BstH2I RGCGCY 2 cut(s) 82, 222
BstHHI GCGC 7 cut(s) 81, 209, 211, 221, 240, 493, 651
BstKTI GATC 3 cut(s) 8, 532, 671
BstMAI GTCTC 2 cut(s) 405, 457
BstMBI GATC 3 cut(s) 5, 529, 668
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstSCI CCNGG 2 cut(s) 295, 385
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 252, 475
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuI GTATCC 1 cut(s) 435
BsuRI GGCC 3 cut(s) 463, 470, 516
BtgI CCRYGG 1 cut(s) 93
BtrI CACGTC 1 cut(s) 370
BtsCI GGATG 2 cut(s) 549, 556
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 3 cut(s) 77, 209, 313
CfoI GCGC 7 cut(s) 81, 209, 211, 221, 240, 493, 651
Cfr10I RCCGGY 3 cut(s) 75, 221, 311
Cfr13I GGNCC 2 cut(s) 224, 515
CseI GACGC 3 cut(s) 335, 440, 482
CviAII CATG 2 cut(s) 274, 615
DdeI CTNAG 3 cut(s) 40, 59, 687
DinI GGCGCC 2 cut(s) 80, 220
DpnI GATC 3 cut(s) 7, 531, 670
DpnII GATC 3 cut(s) 5, 529, 668
DraI TTTAAA 1 cut(s) 658
EaeI YGGCCR 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
EciI GGCGGA 2 cut(s) 315, 330
Eco130I CCWWGG 1 cut(s) 436
Eco147I AGGCCT 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 486
EcoT14I CCWWGG 1 cut(s) 436
EcoT22I ATGCAT 1 cut(s) 556
EgeI GGCGCC 2 cut(s) 80, 220
EheI GGCGCC 2 cut(s) 80, 220
ErhI CCWWGG 1 cut(s) 436
FaeI CATG 2 cut(s) 277, 618
FaqI GGGAC 2 cut(s) 210, 402
FatI CATG 2 cut(s) 273, 614
FauI CCCGC 1 cut(s) 570
Fnu4HI GCNGC 3 cut(s) 241, 309, 489
FokI GGATG 2 cut(s) 556, 563
Fsp4HI GCNGC 3 cut(s) 241, 309, 489
FspBI CTAG 1 cut(s) 437
GlaI GCGC 7 cut(s) 80, 208, 210, 220, 239, 492, 650
GluI GCNGC 3 cut(s) 241, 309, 489
HaeII RGCGCY 2 cut(s) 82, 222
HaeIII GGCC 3 cut(s) 463, 470, 516
HapII CCGG 6 cut(s) 76, 222, 297, 312, 386, 428
HgaI GACGC 3 cut(s) 335, 440, 482
HhaI GCGC 7 cut(s) 81, 209, 211, 221, 240, 493, 651
Hin1I GRCGYC 5 cut(s) 79, 219, 327, 432, 474
Hin1II CATG 2 cut(s) 277, 618
Hin6I GCGC 7 cut(s) 79, 207, 209, 219, 238, 491, 649
HinP1I GCGC 7 cut(s) 79, 207, 209, 219, 238, 491, 649
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 1 cut(s) 398
HpaII CCGG 6 cut(s) 76, 222, 297, 312, 386, 428
HphI GGTGA 2 cut(s) 184, 599
Hpy166II GTNNAC 2 cut(s) 103, 175
Hpy188I TCNGA 1 cut(s) 481
Hpy188III TCNNGA 3 cut(s) 140, 428, 533
Hpy8I GTNNAC 2 cut(s) 103, 175
HpyAV CCTTC 3 cut(s) 388, 533, 541
HpyCH4III ACNGT 2 cut(s) 196, 664
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 1 cut(s) 554
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 3 cut(s) 40, 59, 687
HpySE526I ACGT 1 cut(s) 369
Hsp92I GRCGYC 5 cut(s) 79, 219, 327, 432, 474
Hsp92II CATG 2 cut(s) 277, 618
HspAI GCGC 7 cut(s) 79, 207, 209, 219, 238, 491, 649
KasI GGCGCC 2 cut(s) 78, 218
Kpn2I TCCGGA 1 cut(s) 427
KroI GCCGGC 2 cut(s) 75, 311
KroNI GCCGGC 2 cut(s) 77, 313
Kzo9I GATC 3 cut(s) 5, 529, 668
LguI GCTCTTC 1 cut(s) 567
LmnI GCTCC 2 cut(s) 117, 125
Lsp1109I GCAGC 2 cut(s) 252, 475
LweI GCATC 1 cut(s) 541
MaeI CTAG 1 cut(s) 437
MaeII ACGT 1 cut(s) 369
MalI GATC 3 cut(s) 7, 531, 670
MbiI CCGCTC 2 cut(s) 120, 577
MboI GATC 3 cut(s) 5, 529, 668
MboII GAAGA 5 cut(s) 335, 492, 539, 584, 599
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 3 cut(s) 114, 135, 234
Mly113I GGCGCC 2 cut(s) 79, 219
MlyI GAGTC 1 cut(s) 407
Mph1103I ATGCAT 1 cut(s) 556
MreI CGCCGGCG 1 cut(s) 311
MroI TCCGGA 1 cut(s) 427
MroNI GCCGGC 2 cut(s) 75, 311
MseI TTAA 3 cut(s) 657, 678, 697
MslI CAYNNNNRTG 2 cut(s) 98, 278
MspI CCGG 6 cut(s) 76, 222, 297, 312, 386, 428
MspR9I CCNGG 2 cut(s) 297, 387
Mva1269I GAATGC 2 cut(s) 441, 554
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 246
NaeI GCCGGC 2 cut(s) 77, 313
NarI GGCGCC 2 cut(s) 79, 219
NciI CCSGG 2 cut(s) 297, 387
NdeII GATC 3 cut(s) 5, 529, 668
NgoMIV GCCGGC 2 cut(s) 75, 311
NlaIII CATG 2 cut(s) 277, 618
NlaIV GGNNCC 5 cut(s) 52, 80, 220, 226, 307
NsiI ATGCAT 1 cut(s) 556
NspV TTCGAA 1 cut(s) 380
OliI CACNNNNGTG 1 cut(s) 98
PauI GCGCGC 1 cut(s) 207
PceI AGGCCT 1 cut(s) 463
PciSI GCTCTTC 1 cut(s) 567
PcsI WCGNNNNNNNCGW 3 cut(s) 333, 339, 342
PctI GAATGC 2 cut(s) 441, 554
PdiI GCCGGC 2 cut(s) 77, 313
PkrI GCNGC 3 cut(s) 242, 310, 490
PleI GAGTC 1 cut(s) 406
PluTI GGCGCC 2 cut(s) 82, 222
PpsI GAGTC 1 cut(s) 406
PspN4I GGNNCC 5 cut(s) 52, 80, 220, 226, 307
PspPI GGNCC 2 cut(s) 224, 515
PsuI RGATCY 1 cut(s) 529
PteI GCGCGC 1 cut(s) 207
RseI CAYNNNNRTG 2 cut(s) 98, 278
SapI GCTCTTC 1 cut(s) 567
SaqAI TTAA 3 cut(s) 657, 678, 697
SatI GCNGC 3 cut(s) 241, 309, 489
Sau3AI GATC 3 cut(s) 5, 529, 668
Sau96I GGNCC 2 cut(s) 224, 515
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 2 cut(s) 297, 387
SduI GDGCHC 3 cut(s) 114, 135, 234
SetI ASST 6 cut(s) 72, 245, 307, 372, 378, 566
SfaNI GCATC 1 cut(s) 541
SfoI GGCGCC 2 cut(s) 80, 220
SfuI TTCGAA 1 cut(s) 380
SgrAI CRCCGGYG 1 cut(s) 311
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 2 cut(s) 98, 278
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SseBI AGGCCT 1 cut(s) 463
SsiI CCGC 6 cut(s) 90, 118, 300, 309, 315, 577
SspDI GGCGCC 2 cut(s) 78, 218
SspI AATATT 1 cut(s) 289
SspMI CTAG 1 cut(s) 437
StuI AGGCCT 1 cut(s) 463
StyD4I CCNGG 2 cut(s) 295, 385
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 2 cut(s) 196, 664
TaiI ACGT 1 cut(s) 372
TaqI TCGA 4 cut(s) 213, 372, 380, 610
TaqII GACCGA 1 cut(s) 259
TauI GCSGC 1 cut(s) 311
Tru1I TTAA 3 cut(s) 657, 678, 697
Tru9I TTAA 3 cut(s) 657, 678, 697
TscAI CASTG 1 cut(s) 63
TseI GCWGC 2 cut(s) 240, 488
TspDTI ATGAA 3 cut(s) 552, 560, 696
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 224
XmaJI CCTAGG 1 cut(s) 436
XspI CTAG 1 cut(s) 437
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.