Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002311

Physical Location & Seq

Genomic Coordinates Forward (+)

28239765 .. 28245026

Gene Structure 5262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

TTGGTAACCACATTGGATTGCATCCAGCTGCGTTTCAACTATGACATAAGCAACCGCGACACTACTGGAGTGAACCAGATCGGAACGATTAAGCGCGTGAGGCGCGTACTCTGTGCTTCTTCCTCTGATTTCGCCGGACTCTTCCCCAACCCGGCAGTGCTCACACTGCCGTCGACATCGGAAATCGGCCGCTTAGACAACAAGTTCCTCGCCGATATCGTCATATGGCTGTTGCTATTTGGAGGCCATGGAACTGGTGGCTGGTTGAGTCGTTATGACATCTATTACAATGACTGCATTATCTTAGACAGGGTTTCTGCACAGTTGAAGCGATTACCTACAGGCAATGAATCCCCTCCTTCACGAGTTTACCATTCTCTGACATGTATCGGCTCACGTCATCTCTTATTTGGTGGCTTTGATGGAAAATCCACATTTGGTGATCTGTGGCGGTTGGTTCCTGGAGTAACGGCTGGAATGCGGCTGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04212 ko05168 map04212 map05168

Pfam Domains

Protein Families

Kelch_3 Kelch_4 Kelch_5

Protein Analysis

164

Amino Acids

18.03

Weight (kDa)

8.94

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	77 - 152	2.5e-10	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42	PF13415	79 - 152	8.3e-07	FBX42, beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36360 AT2G36360 AT2G36360 AT2G36360 AT2G36360
fragaria_vesca	FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38190 FvH4_5g38190 FvH4_7g05461
malus_domestica	MD02G1248400.v1.1 MD07G1067800.v1.1
prunus_persica	Prupe.2G084800_v2.0.a1 Prupe.2G084800_v2.0.a1
pyrus_communis	pycom02g21300 pycom07g05200
rosa_chinensis	RchiOBHm_Chr1g0333031 RchiOBHm_Chr1g0333101 RchiOBHm_Chr1g0333111 RchiOBHm_Chr1g0333981 RchiOBHm_Chr1g0333991
rosa_laevigata	RLG00000029628
rosa_multiflora	Rmu_sc0024961.1_g000002
rosa_roxburghii	Rroxscaffold_4G00317820
rosa_rugosa	Rorug01G0106600 Rorug01G0106600 Rorug01G0106700 Rorug01G0106800
rosa_samantha	Rh1AG129600 Rh1AG130200 Rh1BG099100 Rh1CG124000 Rh1DG135700
rosa_wichuraiana	Rw1G010260 Rw1G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	173
AccII	CGCG	3 cut(s)	57, 96, 105
AciI	CCGC	4 cut(s)	55, 190, 451, 481
AcoI	YGGCCR	1 cut(s)	187
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	151
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	37, 328
AjiI	CACGTC	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw21I	GWGCWC	1 cut(s)	162
AoxI	GGCC	2 cut(s)	187, 244
ApeKI	GCWGC	1 cut(s)	28
AspLEI	GCGC	2 cut(s)	96, 105
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	452
BauI	CACGAG	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	1 cut(s)	416
BceAI	ACGGC	2 cut(s)	154, 486
BciT130I	CCWGG	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	3 cut(s)	29, 190, 482
BlsI	GCNGC	3 cut(s)	30, 191, 483
Bme1390I	CCNGG	2 cut(s)	152, 462
BmgBI	CACGTC	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	2 cut(s)	152, 462
BmsI	GCATC	1 cut(s)	30
BpmI	CTGGAG	2 cut(s)	87, 483
BpuMI	CCSGG	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	70, 259
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	352
BseNI	ACTGG	2 cut(s)	70, 259
BseX3I	CGGCCG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	303
Bsh1236I	CGCG	3 cut(s)	57, 96, 105
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	189, 246
BsiEI	CGRYCG	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	135, 152
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	2 cut(s)	189, 246
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	78, 442
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	4 cut(s)	55, 190, 451, 481
BspANI	GGCC	2 cut(s)	189, 246
BspFNI	CGCG	3 cut(s)	57, 96, 105
BspLI	GGNNCC	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	70, 259
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	2 cut(s)	78, 442
BssSI	CACGAG	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	247
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	324
Bst6I	CTCTTC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	193, 304
BstDSI	CCRYGG	1 cut(s)	247
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	1 cut(s)	21
BstFNI	CGCG	3 cut(s)	57, 96, 105
BstHHI	GCGC	2 cut(s)	96, 105
BstKTI	GATC	2 cut(s)	81, 445
BstMBI	GATC	2 cut(s)	78, 442
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 102, 166
BstNI	CCWGG	1 cut(s)	462
BstNSI	RCATGY	1 cut(s)	387
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	2 cut(s)	150, 460
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	3 cut(s)	57, 96, 105
BstV1I	GCAGC	1 cut(s)	15
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstZI	CGGCCG	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	189, 246
BtgI	CCRYGG	1 cut(s)	247
BtrI	CACGTC	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	21
BtsI	GCAGTG	2 cut(s)	162, 164
BtsIMutI	CAGTG	2 cut(s)	162, 164
CfoI	GCGC	2 cut(s)	96, 105
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	2 cut(s)	248, 384
CviJI	RGCY	9 cut(s)	28, 189, 229, 246, 261, 393, 417, 473, 484
CviKI_1	RGCY	9 cut(s)	28, 189, 229, 246, 261, 393, 417, 473, 484
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	2 cut(s)	193, 304
DpnI	GATC	2 cut(s)	80, 444
DpnII	GATC	2 cut(s)	78, 442
EaeI	YGGCCR	1 cut(s)	187
EagI	CGGCCG	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EclXI	CGGCCG	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	247
Eco32I	GATATC	1 cut(s)	217
Eco52I	CGGCCG	1 cut(s)	187
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	460
EcoRV	GATATC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	2 cut(s)	251, 387
FaiI	YATR	7 cut(s)	42, 47, 224, 226, 249, 276, 385
FatI	CATG	2 cut(s)	247, 383
FauNDI	CATATG	1 cut(s)	224
FblI	GTMKAC	1 cut(s)	173
Fnu4HI	GCNGC	3 cut(s)	29, 190, 482
FokI	GGATG	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	29, 190, 482
GlaI	GCGC	2 cut(s)	95, 104
GluI	GCNGC	3 cut(s)	29, 190, 482
GsuI	CTGGAG	2 cut(s)	87, 483
HaeIII	GGCC	2 cut(s)	189, 246
HapII	CCGG	2 cut(s)	135, 152
HhaI	GCGC	2 cut(s)	96, 105
Hin1II	CATG	2 cut(s)	251, 387
Hin6I	GCGC	2 cut(s)	94, 103
HinP1I	GCGC	2 cut(s)	94, 103
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	3 cut(s)	138, 268, 350
HpaII	CCGG	2 cut(s)	135, 152
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	3 cut(s)	73, 174, 370
Hpy188I	TCNGA	4 cut(s)	83, 127, 181, 381
Hpy188III	TCNNGA	1 cut(s)	363
Hpy8I	GTNNAC	3 cut(s)	73, 174, 370
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	369
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	3 cut(s)	21, 297, 320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 102, 166
HpyF3I	CTNAG	2 cut(s)	193, 304
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	2 cut(s)	251, 387
HspAI	GCGC	2 cut(s)	94, 103
Kzo9I	GATC	2 cut(s)	78, 442
Lsp1109I	GCAGC	1 cut(s)	15
LweI	GCATC	1 cut(s)	30
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	2 cut(s)	4, 466
MalI	GATC	2 cut(s)	80, 444
MboI	GATC	2 cut(s)	78, 442
MboII	GAAGA	2 cut(s)	111, 133
MhlI	GDGCHC	1 cut(s)	162
MlyI	GAGTC	2 cut(s)	132, 277
MnlI	CCTC	5 cut(s)	93, 133, 218, 236, 366
MseI	TTAA	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	2 cut(s)	135, 152
MspR9I	CCNGG	2 cut(s)	152, 462
Mva1269I	GAATGC	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	462
MvnI	CGCG	3 cut(s)	57, 96, 105
MwoI	GCNNNNNNNGC	3 cut(s)	100, 102, 166
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	247
NdeI	CATATG	1 cut(s)	224
NdeII	GATC	2 cut(s)	78, 442
NlaIII	CATG	2 cut(s)	251, 387
NlaIV	GGNNCC	1 cut(s)	459
NspI	RCATGY	1 cut(s)	387
PciI	ACATGT	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	350
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	3 cut(s)	30, 191, 483
PleI	GAGTC	2 cut(s)	132, 276
PpsI	GAGTC	2 cut(s)	132, 276
PscI	ACATGT	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	460
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	459
PvuII	CAGCTG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SalI	GTCGAC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	3 cut(s)	29, 190, 482
Sau3AI	GATC	2 cut(s)	78, 442
SchI	GAGTC	2 cut(s)	132, 277
ScrFI	CCNGG	2 cut(s)	152, 462
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	3 cut(s)	30, 340, 400
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	339
SsiI	CCGC	4 cut(s)	55, 190, 451, 481
StyD4I	CCNGG	2 cut(s)	150, 460
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	324
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	173
TauI	GCSGC	2 cut(s)	192, 484
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	2 cut(s)	162, 171
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	363
TspRI	CASTG	2 cut(s)	162, 171
XceI	RCATGY	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.