Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024961.1

Orthogroup ID

OG0002311

Physical Location & Seq

Genomic Coordinates Reverse (-)

7548 .. 10009

Gene Structure 2462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024961.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgcattactgggttcgagcttgttcgtctgatttcgccggaactcttccccaacctcgcagtggtcacactgccgtcaacattggaaaatccaaagtgatcgtgttcggaggccttgtagagaagaggtttctcaacgatatcgtcgtctatgacattgataataaactatggtataagccagagtgcactggcggcactgatggacaagtgggtccaagtcctcgggcatttcacgttgctgttgtgattgattgtcatatgttcttctttggtgggcgttgcggtggcaagaggttaggtgacttttgggtcctagatactgatatatggcaatggtcagagttgacaagctttggtgacttaccctcagcacgcgactttgctgcagcttcagctattggaaatcagaaaattattatgtatggtggctgggatggtaaaaagtggttgtcagatgtgtacgtcttggacacaatatcactagagtggatggaactgtcagttactggatcactgccaccacctagatgtggccacacagctactatggttgaaaaacggttgcttgtctatggcggcagaggaggtggaggtcctatcatgggtgatttatgggctttgaagggtgtaatcgcagaaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_3 Kelch_4

Protein Analysis

215

Amino Acids

23.52

Weight (kDa)

6.51

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36360 AT2G36360 AT2G36360 AT2G36360 AT2G36360
fragaria_vesca	FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38020 FvH4_5g38190 FvH4_5g38190 FvH4_7g05461
malus_domestica	MD02G1248400.v1.1 MD07G1067800.v1.1
prunus_persica	Prupe.2G084800_v2.0.a1 Prupe.2G084800_v2.0.a1
pyrus_communis	pycom02g21300 pycom07g05200
rosa_chinensis	RchiOBHm_Chr1g0333031 RchiOBHm_Chr1g0333101 RchiOBHm_Chr1g0333111 RchiOBHm_Chr1g0333981 RchiOBHm_Chr1g0333991
rosa_laevigata	RLG00000029628
rosa_multiflora	Rmu_sc0024961.1_g000002
rosa_roxburghii	Rroxscaffold_4G00317820
rosa_rugosa	Rorug01G0106600 Rorug01G0106600 Rorug01G0106700 Rorug01G0106800
rosa_samantha	Rh1AG129600 Rh1AG130200 Rh1BG099100 Rh1CG124000 Rh1DG135700
rosa_wichuraiana	Rw1G010260 Rw1G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	213, 311
AccII	CGCG	1 cut(s)	378
AciI	CCGC	3 cut(s)	195, 285, 579
AclWI	GGATC	1 cut(s)	520
AcoI	YGGCCR	1 cut(s)	535
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	3 cut(s)	62, 533, 605
AgsI	TTSAA	2 cut(s)	557, 625
AleI	CACNNNNGTG	1 cut(s)	487
AluBI	AGCT	5 cut(s)	20, 354, 392, 398, 545
AluI	AGCT	5 cut(s)	20, 354, 392, 398, 545
Alw21I	GWGCWC	1 cut(s)	191
Alw44I	GTGCAC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	520
AlwNI	CAGNNNCTG	1 cut(s)	509
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	2 cut(s)	112, 535
ApaLI	GTGCAC	1 cut(s)	187
ApeKI	GCWGC	2 cut(s)	386, 389
AspS9I	GGNCC	3 cut(s)	215, 313, 596
AsuHPI	GGTGA	3 cut(s)	314, 371, 620
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	3 cut(s)	215, 313, 596
BaeGI	GKGCMC	1 cut(s)	191
BalI	TGGCCA	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	191
BbvCI	CCTCAGC	1 cut(s)	370
BbvI	GCAGC	2 cut(s)	373, 401
BccI	CCATC	3 cut(s)	197, 431, 487
BceAI	ACGGC	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BfaI	CTAG	3 cut(s)	317, 485, 528
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	4 cut(s)	196, 387, 390, 580
BlsI	GCNGC	4 cut(s)	197, 388, 391, 581
Bme18I	GGWCC	3 cut(s)	215, 313, 596
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	3 cut(s)	215, 313, 596
BmiI	GGNNCC	2 cut(s)	216, 314
BmrI	ACTGGG	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 533, 605
Bse1I	ACTGG	3 cut(s)	14, 196, 514
Bse3DI	GCAATG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	224
BseGI	GGATG	2 cut(s)	442, 498
BseLI	CCNNNNNNNGG	3 cut(s)	62, 533, 605
BseMI	GCAATG	1 cut(s)	341
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	3 cut(s)	14, 196, 514
BseRI	GAGGAG	1 cut(s)	600
BseSI	GKGCMC	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	373, 401
BseYI	CCCAGC	1 cut(s)	432
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	2 cut(s)	114, 537
BsiHKAI	GWGCWC	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	3 cut(s)	62, 533, 605
BsnI	GGCC	2 cut(s)	114, 537
BsoBI	CYCGRG	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	99, 512
BspACI	CCGC	3 cut(s)	195, 285, 579
BspANI	GGCC	2 cut(s)	114, 537
BspCNI	CTCAG	1 cut(s)	383
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	216, 314
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	341
BsrI	ACTGG	3 cut(s)	14, 196, 514
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	2 cut(s)	99, 512
Bst4CI	ACNGT	2 cut(s)	501, 564
Bst6I	CTCTTC	2 cut(s)	51, 119
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	442, 498
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	2 cut(s)	102, 515
BstMBI	GATC	2 cut(s)	99, 512
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 395
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	191
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	373, 401
BsuRI	GGCC	2 cut(s)	114, 537
BtsCI	GGATG	2 cut(s)	442, 498
BtsI	GCAGTG	3 cut(s)	67, 69, 515
BtsIMutI	CAGTG	5 cut(s)	67, 69, 189, 198, 515
Cac8I	GCNNGC	1 cut(s)	376
CaiI	CAGNNNCTG	1 cut(s)	509
Cfr13I	GGNCC	3 cut(s)	215, 313, 596
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	1 cut(s)	604
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	1 cut(s)	370
DpnI	GATC	2 cut(s)	101, 514
DpnII	GATC	2 cut(s)	99, 512
DrdI	GACNNNNNNGTC	2 cut(s)	213, 311
DseDI	GACNNNNNNGTC	2 cut(s)	213, 311
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	2 cut(s)	51, 119
EarI	CTCTTC	2 cut(s)	51, 119
Eco147I	AGGCCT	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	142
Eco47I	GGWCC	3 cut(s)	215, 313, 596
Eco57I	CTGAAG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	225
EcoO109I	RGGNCCY	2 cut(s)	313, 596
EcoRV	GATATC	1 cut(s)	142
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	607
FatI	CATG	1 cut(s)	603
FauNDI	CATATG	1 cut(s)	261
Fnu4HI	GCNGC	4 cut(s)	196, 387, 390, 580
FokI	GGATG	2 cut(s)	449, 505
Fsp4HI	GCNGC	4 cut(s)	196, 387, 390, 580
FspBI	CTAG	3 cut(s)	317, 485, 528
GluI	GCNGC	4 cut(s)	196, 387, 390, 580
GsaI	CCCAGC	1 cut(s)	436
HaeIII	GGCC	2 cut(s)	114, 537
HapII	CCGG	1 cut(s)	39
Hin1II	CATG	1 cut(s)	607
HincII	GTYRAC	2 cut(s)	79, 348
HindII	GTYRAC	2 cut(s)	79, 348
HindIII	AAGCTT	1 cut(s)	352
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	3 cut(s)	314, 371, 620
Hpy166II	GTNNAC	4 cut(s)	79, 189, 348, 463
Hpy188I	TCNGA	5 cut(s)	31, 110, 343, 411, 457
Hpy8I	GTNNAC	4 cut(s)	79, 189, 348, 463
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	619, 635
HpyCH4III	ACNGT	2 cut(s)	501, 564
HpyCH4IV	ACGT	2 cut(s)	237, 465
HpyCH4V	TGCA	3 cut(s)	4, 189, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 395
HpyF3I	CTNAG	1 cut(s)	370
HpySE526I	ACGT	2 cut(s)	237, 465
Hsp92II	CATG	1 cut(s)	607
Kzo9I	GATC	2 cut(s)	99, 512
LpnPI	CCDG	5 cut(s)	52, 177, 195, 418, 495
Lsp1109I	GCAGC	2 cut(s)	373, 401
MaeI	CTAG	3 cut(s)	317, 485, 528
MaeII	ACGT	2 cut(s)	237, 465
MaeIII	GTNAC	4 cut(s)	65, 302, 359, 505
MalI	GATC	2 cut(s)	101, 514
MboI	GATC	2 cut(s)	99, 512
MboII	GAAGA	3 cut(s)	38, 136, 259
MhlI	GDGCHC	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	1 cut(s)	414
MluNI	TGGCCA	1 cut(s)	537
MnlI	CCTC	9 cut(s)	66, 104, 120, 234, 288, 379, 578, 581, 587
Mox20I	TGGCCA	1 cut(s)	537
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	537
MslI	CAYNNNNRTG	2 cut(s)	487, 529
Msp20I	TGGCCA	1 cut(s)	537
MspI	CCGG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	195, 395
NdeI	CATATG	1 cut(s)	261
NdeII	GATC	2 cut(s)	99, 512
NlaIII	CATG	1 cut(s)	607
NlaIV	GGNNCC	2 cut(s)	216, 314
NmuCI	GTSAC	3 cut(s)	65, 302, 359
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	487
PceI	AGGCCT	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PkrI	GCNGC	4 cut(s)	197, 388, 391, 581
PpuMI	RGGWCCY	2 cut(s)	313, 596
Psp5II	RGGWCCY	2 cut(s)	313, 596
PspFI	CCCAGC	1 cut(s)	432
PspN4I	GGNNCC	2 cut(s)	216, 314
PspPI	GGNCC	3 cut(s)	215, 313, 596
PspPPI	RGGWCCY	2 cut(s)	313, 596
PstI	CTGCAG	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	2 cut(s)	487, 529
SatI	GCNGC	4 cut(s)	196, 387, 390, 580
Sau3AI	GATC	2 cut(s)	99, 512
Sau96I	GGNCC	3 cut(s)	215, 313, 596
SduI	GDGCHC	1 cut(s)	191
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	3 cut(s)	215, 313, 596
SmiMI	CAYNNNNRTG	2 cut(s)	487, 529
Sse9I	AATT	1 cut(s)	414
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	3 cut(s)	195, 285, 579
SspMI	CTAG	3 cut(s)	317, 485, 528
StuI	AGGCCT	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	501, 564
TaiI	ACGT	2 cut(s)	240, 468
TaqI	TCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	414
TauI	GCSGC	2 cut(s)	198, 582
TscAI	CASTG	5 cut(s)	67, 76, 196, 205, 522
TseFI	GTSAC	3 cut(s)	65, 302, 359
TseI	GCWGC	2 cut(s)	386, 389
Tsp45I	GTSAC	3 cut(s)	65, 302, 359
TspRI	CASTG	5 cut(s)	67, 76, 196, 205, 522
VneI	GTGCAC	1 cut(s)	187
VpaK11BI	GGWCC	3 cut(s)	215, 313, 596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XspI	CTAG	3 cut(s)	317, 485, 528
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.